CmaCh02G005320 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G005320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 2938872 .. 2939571 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATGTGTATCACAAATTCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAATTCTTTTTTTTTCTTTTTTAAGAATTAG

mRNA sequence

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Coding sequence (CDS)

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Protein sequence

MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHN
Homology
[Close]
BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

[Close]
BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

[Close]
BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1 

Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

[Close]
BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.1e-18
Identity = 78/182 (42.86%), Postives = 98/182 (53.85%), Query Frame = 1 

Query: 31  QLLELRLGHSTHLISRSSRQ------ILQQTPSTPIGDALFPFVLRDLQHPPFLSNC--Y 90
           Q L +RL   + LIS+S         IL+QTP T IG+ALF   L +LQ+P         
Sbjct: 21  QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS--LSNLQYPLQQQELEYM 80

Query: 91  VLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVE 150
           V +FL SF++  + C I+   I SFA Q    N    F I   VD  +  W +  P L  
Sbjct: 81  VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNEC--FKIETNVDYIKEYWTEAAPELYP 140

Query: 151 EYSPAEMN----GAPASAIERLQRQKFDGLREEEEE--GDCSVCCEALKGE-EEVSRIPC 198
             +  E      GA  SAIER+++QKFDG R EEEE  GDCSVCCE +K +  EV RIPC
Sbjct: 141 ISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPC 198

[Close]
BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 64/188 (34.04%), Postives = 96/188 (51.06%), Query Frame = 1 

Query: 20  NGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLS 79
           +GT  +G   + +  ++   S   ++    ++L QTP  P  +ALF   LR LQ P F  
Sbjct: 16  SGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF-- 75

Query: 80  NCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDL--- 139
             Y+ Q LSS +I  AA   +   I+S  LQ+   N + NFHI+ EVD   +IW+     
Sbjct: 76  --YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGG 135

Query: 140 ------DPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEE-E 198
                 +  +++E  PA   G   +  ERL+ ++     + EE GDCS+C + L  E+ E
Sbjct: 136 GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEE-----KMEELGDCSICLDELSCEKRE 194

[Close]
BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

[Close]
BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 4.6e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

[Close]
BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-32
Identity = 97/198 (48.99%), Postives = 120/198 (60.61%), Query Frame = 1 

Query: 9   LSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFV 68
           LS +C I S+   T        QL+E+RL   + L+S SS QI+QQT  TPI DALF F 
Sbjct: 7   LSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66

Query: 69  LRDLQ--HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEV 128
           L +L+  +PPF  +  +LQFLS      A    I+  ISSFALQLAAGN++LNFH++  V
Sbjct: 67  LPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATV 126

Query: 129 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD-CSVCCEAL- 188
           D+   I VDLD     +YSP   NGAPAS IERL  +K+D     EE GD C VC E L 
Sbjct: 127 DLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLN 186

Query: 189 -----KGEEEVSRIPCGH 198
                + EEEV+RIPCGH
Sbjct: 187 CEREEEKEEEVTRIPCGH 193

[Close]
BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1 

Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

[Close]
BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 85/193 (44.04%), Postives = 108/193 (55.96%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCS  +T N            L  R G+S+ LI     QILQQTPS  +G+ L PF  
Sbjct: 8   SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILMGETLIPF-- 67

Query: 70  RDLQHPPFLSNCYVL--QFLSSFSIP--IAACDIIYEEISSFALQLAAGNMDLNFHIVVE 129
            +L HP    +   L  +FL SF++    +A   I  +I SFALQ    N+  +F I   
Sbjct: 68  SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNVHGSFKIEAN 127

Query: 130 VDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALK 189
           V+  E + +    F  E  SP    GAP SAIERL+++KFD L +EEE GDCSVC E LK
Sbjct: 128 VEHVEDLIIGEQGF-QETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELK 185

Query: 190 GE-EEVSRIPCGH 198
           G+ +EVSRIPCGH
Sbjct: 188 GQGKEVSRIPCGH 185

The following BLAST results are available for this feature:
BLAST of CmaCh02G005320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G005320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB0_CUCSA1.3e-4352.08Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA3.2e-3948.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA1.1e-2344.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
A0A0A0LHS2_CUCSA4.1e-1842.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA1.4e-1534.04Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
BLAST of CmaCh02G005320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G005320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674460|ref|XP_011650219.1|1.8e-4352.08PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|4.6e-3948.26hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|9.3e-3248.99PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778689036|ref|XP_011652885.1|1.6e-2344.83PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
gi|659121671|ref|XP_008460768.1|2.1e-2044.04PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005320.1CmaCh02G005320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 170..198
score: 8.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 164..197
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G005320CmoCh02G005440Cucurbita moschata (Rifu)cmacmoB619
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G005320Cucurbita maxima (Rimu)cmacmaB469
CmaCh02G005320Cucumber (Gy14) v1cgycmaB0228
CmaCh02G005320Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G005320Wild cucumber (PI 183967)cmacpiB587
CmaCh02G005320Wild cucumber (PI 183967)cmacpiB631
CmaCh02G005320Cucumber (Chinese Long) v2cmacuB582
CmaCh02G005320Cucumber (Chinese Long) v2cmacuB626
CmaCh02G005320Melon (DHL92) v3.5.1cmameB584
CmaCh02G005320Watermelon (Charleston Gray)cmawcgB520
CmaCh02G005320Watermelon (Charleston Gray)cmawcgB533
CmaCh02G005320Watermelon (97103) v1cmawmB570
CmaCh02G005320Watermelon (97103) v1cmawmB587
CmaCh02G005320Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G005320Bottle gourd (USVL1VR-Ls)cmalsiB546
CmaCh02G005320Bottle gourd (USVL1VR-Ls)cmalsiB567
CmaCh02G005320Cucumber (Gy14) v2cgybcmaB225
CmaCh02G005320Cucumber (Gy14) v2cgybcmaB816
CmaCh02G005320Silver-seed gourdcarcmaB1466
CmaCh02G005320Cucumber (Chinese Long) v3cmacucB0697
CmaCh02G005320Cucumber (Chinese Long) v3cmacucB0748
CmaCh02G005320Watermelon (97103) v2cmawmbB621
CmaCh02G005320Wax gourdcmawgoB0768