CmaCh02G005320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr02 : 2938872 .. 2939571 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATGTGTATCACAAATTCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAATTCTTTTTTTTTCTTTTTTAAGAATTAG

mRNA sequence

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Coding sequence (CDS)

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Protein sequence

MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHN

Homology

[Close]

BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

[Close]

BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

[Close]

BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1


Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

[Close]

BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.1e-18
Identity = 78/182 (42.86%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 31  QLLELRLGHSTHLISRSSRQ------ILQQTPSTPIGDALFPFVLRDLQHPPFLSNC--Y 90
           Q L +RL   + LIS+S         IL+QTP T IG+ALF   L +LQ+P         
Sbjct: 21  QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS--LSNLQYPLQQQELEYM 80

Query: 91  VLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVE 150
           V +FL SF++  + C I+   I SFA Q    N    F I   VD  +  W +  P L  
Sbjct: 81  VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNEC--FKIETNVDYIKEYWTEAAPELYP 140

Query: 151 EYSPAEMN----GAPASAIERLQRQKFDGLREEEEE--GDCSVCCEALKGE-EEVSRIPC 198
             +  E      GA  SAIER+++QKFDG R EEEE  GDCSVCCE +K +  EV RIPC
Sbjct: 141 ISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPC 198

[Close]

BLAST of CmaCh02G005320 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 64/188 (34.04%), Postives = 96/188 (51.06%), Query Frame = 1


Query: 20  NGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLS 79
           +GT  +G   + +  ++   S   ++    ++L QTP  P  +ALF   LR LQ P F  
Sbjct: 16  SGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF-- 75

Query: 80  NCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDL--- 139
             Y+ Q LSS +I  AA   +   I+S  LQ+   N + NFHI+ EVD   +IW+     
Sbjct: 76  --YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGG 135

Query: 140 ------DPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEE-E 198
                 +  +++E  PA   G   +  ERL+ ++     + EE GDCS+C + L  E+ E
Sbjct: 136 GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEE-----KMEELGDCSICLDELSCEKRE 194

[Close]

BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

[Close]

BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 4.6e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

[Close]

BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-32
Identity = 97/198 (48.99%), Postives = 120/198 (60.61%), Query Frame = 1


Query: 9   LSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFV 68
           LS +C I S+   T        QL+E+RL   + L+S SS QI+QQT  TPI DALF F 
Sbjct: 7   LSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66

Query: 69  LRDLQ--HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEV 128
           L +L+  +PPF  +  +LQFLS      A    I+  ISSFALQLAAGN++LNFH++  V
Sbjct: 67  LPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATV 126

Query: 129 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD-CSVCCEAL- 188
           D+   I VDLD     +YSP   NGAPAS IERL  +K+D     EE GD C VC E L 
Sbjct: 127 DLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLN 186

Query: 189 -----KGEEEVSRIPCGH 198
                + EEEV+RIPCGH
Sbjct: 187 CEREEEKEEEVTRIPCGH 193

[Close]

BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1


Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

[Close]

BLAST of CmaCh02G005320 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 85/193 (44.04%), Postives = 108/193 (55.96%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCS  +T N            L  R G+S+ LI     QILQQTPS  +G+ L PF  
Sbjct: 8   SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILMGETLIPF-- 67

Query: 70  RDLQHPPFLSNCYVL--QFLSSFSIP--IAACDIIYEEISSFALQLAAGNMDLNFHIVVE 129
            +L HP    +   L  +FL SF++    +A   I  +I SFALQ    N+  +F I   
Sbjct: 68  SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNVHGSFKIEAN 127

Query: 130 VDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALK 189
           V+  E + +    F  E  SP    GAP SAIERL+++KFD L +EEE GDCSVC E LK
Sbjct: 128 VEHVEDLIIGEQGF-QETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELK 185

Query: 190 GE-EEVSRIPCGH 198
           G+ +EVSRIPCGH
Sbjct: 188 GQGKEVSRIPCGH 185

The following BLAST results are available for this feature:

BLAST of CmaCh02G005320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G005320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0_CUCSA	1.3e-43	52.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	3.2e-39	48.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	1.1e-23	44.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]
A0A0A0LHS2_CUCSA	4.1e-18	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0K2W2_CUCSA	1.4e-15	34.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1	[more]

BLAST of CmaCh02G005320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G005320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674460\|ref\|XP_011650219.1\|	1.8e-43	52.08	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	4.6e-39	48.26	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]
gi\|659132530\|ref\|XP_008466247.1\|	9.3e-32	48.99	PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo]	[more]
gi\|778689036\|ref\|XP_011652885.1\|	1.6e-23	44.83	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus]	[more]
gi\|659121671\|ref\|XP_008460768.1\|	2.1e-20	44.04	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005320.1	CmaCh02G005320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 170..198 score: 8.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 164..197 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G005320	CmoCh02G005440	Cucurbita moschata (Rifu)	cmacmoB619

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G005320	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G005320	Bottle gourd (USVL1VR-Ls)	cmalsiB546
CmaCh02G005320	Bottle gourd (USVL1VR-Ls)	cmalsiB567
CmaCh02G005320	Cucumber (Gy14) v2	cgybcmaB225
CmaCh02G005320	Cucumber (Gy14) v2	cgybcmaB816
CmaCh02G005320	Silver-seed gourd	carcmaB1466
CmaCh02G005320	Cucumber (Chinese Long) v3	cmacucB0697
CmaCh02G005320	Cucumber (Chinese Long) v3	cmacucB0748
CmaCh02G005320	Watermelon (97103) v2	cmawmbB621
CmaCh02G005320	Wax gourd	cmawgoB0768
CmaCh02G005320	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G005320	Cucumber (Gy14) v1	cgycmaB0228
CmaCh02G005320	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G005320	Wild cucumber (PI 183967)	cmacpiB587
CmaCh02G005320	Wild cucumber (PI 183967)	cmacpiB631
CmaCh02G005320	Cucumber (Chinese Long) v2	cmacuB582
CmaCh02G005320	Cucumber (Chinese Long) v2	cmacuB626
CmaCh02G005320	Melon (DHL92) v3.5.1	cmameB584
CmaCh02G005320	Watermelon (Charleston Gray)	cmawcgB520
CmaCh02G005320	Watermelon (Charleston Gray)	cmawcgB533
CmaCh02G005320	Watermelon (97103) v1	cmawmB570
CmaCh02G005320	Watermelon (97103) v1	cmawmB587