CmaCh02G005320.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh02G005320.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 2938872 .. 2939571 (+)
Sequence length597
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATGTGTATCACAAATTCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAATTCTTTTTTTTTCTTTTTTAAGAATTAG

mRNA sequence

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Coding sequence (CDS)

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGGCCAGCAACCCATTCAGCTCCTGGAGCTCCGACTCGGACATTCGACCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACCCCAATCGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCCCTCCAATTGGCCGCCGGCAACATGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCAACGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAAGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATAATTAG

Protein sequence

MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHN
BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1

Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.1e-18
Identity = 78/182 (42.86%), Postives = 98/182 (53.85%), Query Frame = 1

Query: 31  QLLELRLGHSTHLISRSSRQ------ILQQTPSTPIGDALFPFVLRDLQHPPFLSNC--Y 90
           Q L +RL   + LIS+S         IL+QTP T IG+ALF   L +LQ+P         
Sbjct: 21  QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS--LSNLQYPLQQQELEYM 80

Query: 91  VLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVE 150
           V +FL SF++  + C I+   I SFA Q    N    F I   VD  +  W +  P L  
Sbjct: 81  VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNEC--FKIETNVDYIKEYWTEAAPELYP 140

Query: 151 EYSPAEMN----GAPASAIERLQRQKFDGLREEEEE--GDCSVCCEALKGE-EEVSRIPC 198
             +  E      GA  SAIER+++QKFDG R EEEE  GDCSVCCE +K +  EV RIPC
Sbjct: 141 ISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPC 198

BLAST of CmaCh02G005320.1 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 64/188 (34.04%), Postives = 96/188 (51.06%), Query Frame = 1

Query: 20  NGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLS 79
           +GT  +G   + +  ++   S   ++    ++L QTP  P  +ALF   LR LQ P F  
Sbjct: 16  SGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLF-- 75

Query: 80  NCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDL--- 139
             Y+ Q LSS +I  AA   +   I+S  LQ+   N + NFHI+ EVD   +IW+     
Sbjct: 76  --YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGG 135

Query: 140 ------DPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEE-E 198
                 +  +++E  PA   G   +  ERL+ ++     + EE GDCS+C + L  E+ E
Sbjct: 136 GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEE-----KMEELGDCSICLDELSCEKRE 194

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-43
Identity = 100/192 (52.08%), Postives = 128/192 (66.67%), Query Frame = 1

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SF+CSI+   NG+ A+  QP+Q +ELRLGH + L+   S QILQQT    I D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVN 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGH 198
            E+EVSRIPCGH
Sbjct: 188 KEKEVSRIPCGH 196

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 4.6e-39
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCSI+     ++A+  QP+Q ++LRL H   L+   S+QILQQT  T I D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNMDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCEAL 189
           D+    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGH 198
            G        E+EVSRIPCGH
Sbjct: 188 YGKRENENEKEKEVSRIPCGH 205

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 9.3e-32
Identity = 97/198 (48.99%), Postives = 120/198 (60.61%), Query Frame = 1

Query: 9   LSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFV 68
           LS +C I S+   T        QL+E+RL   + L+S SS QI+QQT  TPI DALF F 
Sbjct: 7   LSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66

Query: 69  LRDLQ--HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEV 128
           L +L+  +PPF  +  +LQFLS      A    I+  ISSFALQLAAGN++LNFH++  V
Sbjct: 67  LPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATV 126

Query: 129 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD-CSVCCEAL- 188
           D+   I VDLD     +YSP   NGAPAS IERL  +K+D     EE GD C VC E L 
Sbjct: 127 DLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLN 186

Query: 189 -----KGEEEVSRIPCGH 198
                + EEEV+RIPCGH
Sbjct: 187 CEREEEKEEEVTRIPCGH 193

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 1

Query: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQ-HPPFLSNCYVLQFLSS 90
           QL+E+RL   + L+S  S Q +QQT  T I +ALF F L +L+   P L + ++LQFLS 
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELELENPSLFHDFLLQFLSP 82

Query: 91  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 150
                A    I+  ISSFALQLAAGN++LNFH++  VD+   I ++L+     +YSP   
Sbjct: 83  -----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKF-DGLREEEEEGDCSVC-----CEALKGEEEVSRIPCGH 198
           NG PAS +ERL  +K+ DG   E   G C VC     CE  + +EE +RIPCGH
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 190

BLAST of CmaCh02G005320.1 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 85/193 (44.04%), Postives = 108/193 (55.96%), Query Frame = 1

Query: 10  SFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVL 69
           SFQCS  +T N            L  R G+S+ LI     QILQQTPS  +G+ L PF  
Sbjct: 8   SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILMGETLIPF-- 67

Query: 70  RDLQHPPFLSNCYVL--QFLSSFSIP--IAACDIIYEEISSFALQLAAGNMDLNFHIVVE 129
            +L HP    +   L  +FL SF++    +A   I  +I SFALQ    N+  +F I   
Sbjct: 68  SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNVHGSFKIEAN 127

Query: 130 VDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALK 189
           V+  E + +    F  E  SP    GAP SAIERL+++KFD L +EEE GDCSVC E LK
Sbjct: 128 VEHVEDLIIGEQGF-QETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELK 185

Query: 190 GE-EEVSRIPCGH 198
           G+ +EVSRIPCGH
Sbjct: 188 GQGKEVSRIPCGH 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LRB0_CUCSA1.3e-4352.08Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA3.2e-3948.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA1.1e-2344.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
A0A0A0LHS2_CUCSA4.1e-1842.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA1.4e-1534.04Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778674460|ref|XP_011650219.1|1.8e-4352.08PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|4.6e-3948.26hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|9.3e-3248.99PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778689036|ref|XP_011652885.1|1.6e-2344.83PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
gi|659121671|ref|XP_008460768.1|2.1e-2044.04PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G005320CmaCh02G005320gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G005320.1CmaCh02G005320.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G005320.1.exon.1CmaCh02G005320.1.exon.1exon
CmaCh02G005320.1.exon.2CmaCh02G005320.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G005320.1.CDS.1CmaCh02G005320.1.CDS.1CDS
CmaCh02G005320.1.CDS.2CmaCh02G005320.1.CDS.2CDS


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 170..198
score: 8.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 164..197
score: 5.0