CmoCh02G003520 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G003520
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description40S ribosomal protein S12
LocationCmo_Chr02 : 1761045 .. 1765427 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGGGTTGCTTTTATTGTGTCGCTTAAATTATATAGGAACTCTTGAACCCAAGAGTTAAGAATAACAAGTTCTTCATTACCAAGAATAGAATAACCACTTAGAATAATGAAACAGATTATATTTGTCGATGAATACATCACTTTTGCACTAATTTCTCAAAAAACTTTCTCTGTGATAATCAAAACCGAACCAAAACCGATCGGTTCAAACTGATTTATGTAAAAAGTTAACTCAGCCGGCGGTTTTGCTAAACCGGATATTGTGGTTCGATTCTCGATTTGGATAAACCGAACACCGGCCGTATAGGGCTAGGTCACCAACCAGTTGGGCTTTTCCATTCCTCTTCTTCTTCATAAAAACCCCTCACTTCTTCTTGACCTAATTTGCTGCGCCGTTGATTCTTCACTTCGATCGGTATCTACGCTGTTCTCAAGTCGTCTCCTATCCCTATCCTTCCTCGCTTCTTCTTCTTCGATTGTGCCTCTGTTTAAATTGTCTGATTGTTTTTTTGCGTTTGTTTTGCGACAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCGTGAGTGAAAATTTGTTTAGAAGCGTCCATTGGTTGTTTTTTCTTTTATAATTTAAGTTGTTGAATGCCGCTCCTTCTTTCGTTTTTGTTTGCTTCGTTTGAAATATATTAGTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGGTGACTAATCTAGATTGTGAATAAGAAAAAGTTGTGAGTTGAAATTTGATTGGCGAAGGTGACGGAATAATAAATGTTGATGCCTTTAGAGATGAAAATTATATGTTTTGGTTTGAATCATATGAAATATGGAACTTTAAATGAAAATGTGATTTGTTACATTACTTTGTTGGACATTGAAAGATCACGACTGAAGAGTCAAGATCTTATGCTTGTTTAGGAGTGAAATACTATTGAGGTTTCTTTTGTTATTGGCATAGTATTTGCTGCAAATGGCTATATATTGCCTCCAATTGCTTGACAAATCCTTTTTAACTCGATTTCTTATGCAGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTGTCTAATCTTATTTAGCCATCGAGATAAAAATGGCTTTTCTTTTGATCATCTGTCATCACTTGTATTGTATTTATCCTACTATGATTGAATATACACCTCTCAATACTAGGCTACATGTTTTTACCCGTTAATACTTGGCTGCTTTACATGCTCGGGATCGTATTTACATACTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCCGTTATTACTTAGCTGCTTTACATGTTCAGGATCGTATTTACATAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCCGTTAATACTTAGCTGCTTTACATGTTCGGGATCGTATTTACACAACCTCTTCACCTGCCAATGCTAGGCTACATGTTTTTACCTGTTAATAATTAGCTGCTTTACATGTTTGGTATCATATTTGCATAACCTCTTCAAGCACAATCAAGAAGAAGCTTTCTTTTTCACATGCCCTGTCAACACCACGATCGGGGAAGCTCATTTTTGCTTGTATATTGGCATTATACACCATGAATTTGAGTTCGATTTCAAGATGTAATTGATGTGCAGATCCCAATACTACCATCATAAGATTTCCCCCATCTTACTTCAGGATAATAAGTTATTGTGTTGGTCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGTACGTTGTATGATGATGCCCATCACTTCTGGAGCAAATGTTCTGTTCTCTGAACCATTTTTGTTTACTTAAAATTTGAATTCCTATCTCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATGTCAATCACTAAGAAAGTTTTTGATCTTTAGTAATGTTTAGATTGGTTGGTTCCCTGTTGCTGTTGAACACGTTTCTTCTACCCTATAATGCTTTTCTTTGTTTCTATTGATTGGAAAGATTTTGGGCAAACAGAACACAAGTTATTTATCAAGAGTCTCCTTGCCAAGGGTGAAAGGGAATTGAATTTTATCATCTCTTTATGTTGAGTTACTAAGCTATACCTATTTTCGTTTCTGAAGATTAATGCAACAGTGTCTAGTATAGTTTTTCTTTTCCTATAAAACTCAATATGTTATCATTCATATTAGTCGATGCAGTTGAGGTTCATTCGTATATTAATTTGAATTAGACAGCATTCTAAAATTTGATTATCTTGTGAGAAAGGTAGTAAAGGAATCCCAACTTAGGGGTTTAGTTGAGATATTTTTAGATTTAATTCAATTGTTCGAATGGAATTGAACTTTTTATTTTCTTTATTTAAGTAATCTATATTAAATAATTTATCAAATTCTTTGTTTGAGTCATTTATTTAAGCTTTTTTAAATAAATTGTTAATATAGAAAATATTTATTTATTTATTTATTTTTAAACATTGAAATATTTGAAATCTAATTTTAATATATAGTTTGAAAAATTAGATTTCGAAGATTGAATAATCGAAAAAACAATTATAGAATTAAATAAAGTATAATAAACATACATACATGTAATACATGTAAGTACATCGTTAACAAAAAAAAAATTTTAAAATTAAAAAAATTAACAATGGTTTAATCGATTTTAATTTTAGGGAAATTCACAAGAATTTAACCCATATAATTTGAGCCTCTCAGTTGGAACTGCGACGGTGGTTCGGAGTGTCGTTGACCTGCTAAATGCCACAACATTGTCGGTGCGATTATTATTTAGGAAGTTTCTGAGATCCTTCAGTCAACTTCGAAATTAGTCAAACCCCTAGTTGTAGCTTTTGTTGCTGTGTCAAACCCCTAGTTGGATGGTTAAATCCAAATTCTTCTTCAGCTCTGTTCAGCAATCTGATAAATGAAGGATGGTTTAAATATGATATCCGCACCACGAATCGCTTACTTTTGATCTCTTCAAGATTTTTAAAACACGTCTGCTAAGGAGAGGTTTTTATATCTTTATAAAAAATGTTTCATTCTCCTCTCTCAATTAATGTGAGATCTCACAATCCACCTTTCCTTCAAGGTCCAGCGTCCCGCTGGCACTTGTTTCTCTCTCCAATCGATGTGGTATCTCAAAATCCACCCCTCTTCAAGGCTCAGCGTCTTCGCTGGCACACCGTTCGGTGTCTGGCTCTAATACCAATTGTAACGGCTCAAGCCCACCGTTGGCAGATATTGTCCTCTTTGGACTTTCCCTCTCAGGTTTCCCCTCGTATTTGTAAAATGCATCTATTAGGGAGAGGTTCACACACCTTTATAAAGAACGTTTCTTTCTCCTCCTCTAACAATCGTTCCTCTCTCCAATCAATGTAGTATCACACGCCATGTTCGTAATCGATTCAAGTGATAGAAAAATAATGAGTTTGACTGGTTTTTCTCTGAATGAGAATGTGTTGATATTAGGTGTGGATTTATAGAATGAACGAAGAGTAGATGTGCTTTATTAAAGAAGACCCACTTCATCAAATACTCACATGGGATTGCTAACCAATATCTTCACCATATTTTGGTAGGGAGACCCCCTCTTGCCCCAAAAAAAGGAAGCCAAAGACCCAACAAATGGCCAAGAAAATTTCAAAACTAAATGGCAGATCTGTTTGACAAGCTTTTCCTCAACAAGTTTCTGTTTCAATAGACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

mRNA sequence

ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG

Coding sequence (CDS)

ATGAGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGATCGTTTGTTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGAAGGAGAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGCTTATCGACGATGCCTTGTTTTTGTAACGTAGAATCTGAAGCTTGTGATAAACGATTCGAGTGTGATGAAGGTGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTGCATGAGAGTGCCAAGGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAGCTTGTCAAGGCACTTTGTGCGGAGCACGATGTGAACTTGATGACAGTTCCCAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTCGGGTGCTCATGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACACTATGAACAGTGAGAATAGGCTTGAATTTCAGTGCAAAAATCAGACAGCTTCACAGATCCTCAGCGTGGTAGCCATAAAAGATGCTGTGGTATCACCAGCATAG
Homology
[Close]
BLAST of CmoCh02G003520 vs. Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-54
Identity = 101/127 (79.53%), Postives = 118/127 (92.91%), Query Frame = 1 

Query: 100 VEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPD 159
           VEAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPD
Sbjct: 13  VEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPD 72

Query: 160 YVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEA 219
           YVKLVKALCAEH+V+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E 
Sbjct: 73  YVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEG 132

Query: 220 LHIVQKH 227
           L+IVQ++
Sbjct: 133 LNIVQQY 139

[Close]
BLAST of CmoCh02G003520 vs. Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.9e-50
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 1 

Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]
BLAST of CmoCh02G003520 vs. Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-48
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 1 

Query: 94  DEGAVVVEAPA----PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

[Close]
BLAST of CmoCh02G003520 vs. Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 7.4e-37
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 1 

Query: 106 ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 165
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 166 ALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 225
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 226 HTMNSENRLEFQCK 240
           +         F+CK
Sbjct: 127 Y---------FKCK 131

[Close]
BLAST of CmoCh02G003520 vs. Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.6 bits (392), Expect = 7.4e-37
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 1 

Query: 106 ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 165
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 166 ALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 225
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 226 HTMNSENRLEFQCK 240
           +         F+CK
Sbjct: 127 Y---------FKCK 131

[Close]
BLAST of CmoCh02G003520 vs. TrEMBL
Match: A0A0A0LM61_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 8.7e-69
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 1 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  ++
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]
BLAST of CmoCh02G003520 vs. TrEMBL
Match: A0A0A0KA08_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 6.2e-67
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = 1 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DE AVV EAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+ NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  ++
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]
BLAST of CmoCh02G003520 vs. TrEMBL
Match: W9R0I8_9ROSA (40S ribosomal protein S12 OS=Morus notabilis GN=L484_013506 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-61
Identity = 118/134 (88.06%), Postives = 128/134 (95.52%), Query Frame = 1 

Query: 94  DEGAVVVEAPA-PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 153
           +EGAV VEA A PALGEPMDI TALQLVLRKSLAHGGL+RGLHESAK IEKHAAQLCVL 
Sbjct: 4   EEGAVAVEAAAAPALGEPMDITTALQLVLRKSLAHGGLIRGLHESAKVIEKHAAQLCVLA 63

Query: 154 EDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 213
           EDC+QPDYVKLVKALCA+H+VN++TVPSAKTLGEWAGLCKIDSEGKARKVVGC+CVVVKD
Sbjct: 64  EDCDQPDYVKLVKALCADHNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCACVVVKD 123

Query: 214 FGEDHEALHIVQKH 227
           FGEDHEALH+VQ+H
Sbjct: 124 FGEDHEALHVVQQH 137

[Close]
BLAST of CmoCh02G003520 vs. TrEMBL
Match: M5XB76_PRUPE (40S ribosomal protein S12 OS=Prunus persica GN=PRUPE_ppa012957mg PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.8e-59
Identity = 111/125 (88.80%), Postives = 120/125 (96.00%), Query Frame = 1 

Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           APAPALGEPMD+ TALQLVLRKSLAHGGLVRGLHE+AK IEKHAAQLCVL EDC+Q DYV
Sbjct: 19  APAPALGEPMDVTTALQLVLRKSLAHGGLVRGLHEAAKVIEKHAAQLCVLAEDCDQQDYV 78

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H+VN++TVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHE LH
Sbjct: 79  KLVKALCADHNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEGLH 138

Query: 222 IVQKH 227
           +VQ+H
Sbjct: 139 VVQQH 143

[Close]
BLAST of CmoCh02G003520 vs. TrEMBL
Match: A0A068TPS8_COFCA (40S ribosomal protein S12 OS=Coffea canephora GN=GSCOC_T00022242001 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.8e-58
Identity = 113/133 (84.96%), Postives = 122/133 (91.73%), Query Frame = 1 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           +E  V VE PAPALGEPMDI TALQLVLRKSLAHGGL RGLHE AK IEKHAAQLCVL E
Sbjct: 4   EEQPVAVETPAPALGEPMDIMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCA+H+VNL++VPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD+
Sbjct: 64  DCNQPDYVKLVKALCADHNVNLISVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDY 123

Query: 214 GEDHEALHIVQKH 227
           GE+ E LHIVQ++
Sbjct: 124 GEETEGLHIVQEY 136

[Close]
BLAST of CmoCh02G003520 vs. TAIR10
Match: AT2G32060.1 (AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-51
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 1 

Query: 102 APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 161
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 162 KLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 221
           KLVKALCA+H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 222 IVQKH 227
           IV+KH
Sbjct: 136 IVKKH 140

[Close]
BLAST of CmoCh02G003520 vs. TAIR10
Match: AT1G15930.2 (AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 194.5 bits (493), Expect = 8.1e-50
Identity = 99/137 (72.26%), Postives = 110/137 (80.29%), Query Frame = 1 

Query: 94  DEGAVVVEAPA----PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 153
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 154 VLGEDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 213
           VL EDCNQPDYVKLVKALCA+H+V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 214 VKDFGEDHEALHIVQKH 227
           VKDFGE+  AL IV KH
Sbjct: 124 VKDFGEETTALSIVNKH 140

[Close]
BLAST of CmoCh02G003520 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 1 

Query: 1  MSLPWYRVHTVVLNDPDRLFSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQG 60
          M LPWYRVHTVVLNDP RL +VHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQG
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQG 59

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: gi|449458546|ref|XP_004147008.1| (PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 1.2e-68
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 1 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+VNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  ++
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: gi|659122493|ref|XP_008461174.1| (PREDICTED: 40S ribosomal protein S12 [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 8.9e-67
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = 1 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DE AVV EAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+ NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  +S
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: gi|449436183|ref|XP_004135873.1| (PREDICTED: 40S ribosomal protein S12 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 8.9e-67
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = 1 

Query: 94  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 153
           DE AVV EAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 154 DCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 213
           DCNQPDYVKLVKALCAEH+ NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 214 GEDHEALHIVQKHTMNS 231
           GEDHEALHIVQKH  ++
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: gi|703083338|ref|XP_010092188.1| (40S ribosomal protein S12 [Morus notabilis])

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-61
Identity = 118/134 (88.06%), Postives = 128/134 (95.52%), Query Frame = 1 

Query: 94  DEGAVVVEAPA-PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 153
           +EGAV VEA A PALGEPMDI TALQLVLRKSLAHGGL+RGLHESAK IEKHAAQLCVL 
Sbjct: 4   EEGAVAVEAAAAPALGEPMDITTALQLVLRKSLAHGGLIRGLHESAKVIEKHAAQLCVLA 63

Query: 154 EDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 213
           EDC+QPDYVKLVKALCA+H+VN++TVPSAKTLGEWAGLCKIDSEGKARKVVGC+CVVVKD
Sbjct: 64  EDCDQPDYVKLVKALCADHNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCACVVVKD 123

Query: 214 FGEDHEALHIVQKH 227
           FGEDHEALH+VQ+H
Sbjct: 124 FGEDHEALHVVQQH 137

[Close]
BLAST of CmoCh02G003520 vs. NCBI nr
Match: gi|1009113090|ref|XP_015871684.1| (PREDICTED: 40S ribosomal protein S12 [Ziziphus jujuba])

HSP 1 Score: 241.1 bits (614), Expect = 2.1e-60
Identity = 117/134 (87.31%), Postives = 126/134 (94.03%), Query Frame = 1 

Query: 94  DEGAVVVEAPA-PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 153
           DE  V VEA A PALGEPMDI TALQLVLRKSLAHGGL+RGLHE+AK IEKHAAQLCVL 
Sbjct: 4   DEAPVAVEAAAAPALGEPMDIMTALQLVLRKSLAHGGLIRGLHEAAKVIEKHAAQLCVLA 63

Query: 154 EDCNQPDYVKLVKALCAEHDVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 213
           EDC+QPDYVKLVKALCA+H+VN++TVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 64  EDCDQPDYVKLVKALCADHNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 123

Query: 214 FGEDHEALHIVQKH 227
           FGEDHEALH+VQ+H
Sbjct: 124 FGEDHEALHVVQQH 137

The following BLAST results are available for this feature:
BLAST of CmoCh02G003520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS12_HORVU1.0e-5479.5340S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1[more]
RS122_ARATH9.9e-5075.2040S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=1 SV=1[more]
RS121_ARATH1.4e-4872.2640S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1[more]
RS12_PIG7.4e-3755.2240S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2[more]
RS12_HUMAN7.4e-3755.2240S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3[more]
BLAST of CmoCh02G003520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM61_CUCSA8.7e-6995.6240S ribosomal protein S12 OS=Cucumis sativus GN=Csa_2G258680 PE=3 SV=1[more]
A0A0A0KA08_CUCSA6.2e-6793.4340S ribosomal protein S12 OS=Cucumis sativus GN=Csa_7G432030 PE=3 SV=1[more]
W9R0I8_9ROSA1.8e-6188.0640S ribosomal protein S12 OS=Morus notabilis GN=L484_013506 PE=3 SV=1[more]
M5XB76_PRUPE4.8e-5988.8040S ribosomal protein S12 OS=Prunus persica GN=PRUPE_ppa012957mg PE=3 SV=1[more]
A0A068TPS8_COFCA1.8e-5884.9640S ribosomal protein S12 OS=Coffea canephora GN=GSCOC_T00022242001 PE=3 SV=1[more]
BLAST of CmoCh02G003520 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32060.15.6e-5175.20 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT1G15930.28.1e-5072.26 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
ATCG00680.12.3e-2893.22ATCG00680.1 photosystem II reaction center protein B[more]
BLAST of CmoCh02G003520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458546|ref|XP_004147008.1|1.2e-6895.62PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus][more]
gi|659122493|ref|XP_008461174.1|8.9e-6793.43PREDICTED: 40S ribosomal protein S12 [Cucumis melo][more]
gi|449436183|ref|XP_004135873.1|8.9e-6793.43PREDICTED: 40S ribosomal protein S12 [Cucumis sativus][more]
gi|703083338|ref|XP_010092188.1|2.5e-6188.0640S ribosomal protein S12 [Morus notabilis][more]
gi|1009113090|ref|XP_015871684.1|2.1e-6087.31PREDICTED: 40S ribosomal protein S12 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR000932PS_antenna-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0016168chlorophyll binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009521 photosystem
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003520.1CmoCh02G003520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 200..213
score: 2.0E-25coord: 175..196
score: 2.0E-25coord: 134..150
score: 2.0E-25coord: 120..133
score: 2.0
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 97..232
score: 2.0
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 116..134
scor
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 1..59
score: 5.5
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 3..60
score: 1.29
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 116..209
score: 7.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G003520Cucsa.169510Cucumber (Gy14) v1cgycmoB0483
CmoCh02G003520CmaCh20G007890Cucurbita maxima (Rimu)cmacmoB554
CmoCh02G003520CmaCh02G003500Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G003520Cla016624Watermelon (97103) v1cmowmB603
CmoCh02G003520Csa2G258680Cucumber (Chinese Long) v2cmocuB577
CmoCh02G003520MELO3C020759Melon (DHL92) v3.5.1cmomeB527
CmoCh02G003520ClCG11G003740Watermelon (Charleston Gray)cmowcgB515
CmoCh02G003520CSPI02G12910Wild cucumber (PI 183967)cmocpiB582
CmoCh02G003520Lsi10G004370Bottle gourd (USVL1VR-Ls)cmolsiB533
CmoCh02G003520Cp4.1LG16g02910Cucurbita pepo (Zucchini)cmocpeB575
CmoCh02G003520Cp4.1LG05g13040Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G003520MELO3C020759.2Melon (DHL92) v3.6.1cmomedB606
CmoCh02G003520CsaV3_2G015470Cucumber (Chinese Long) v3cmocucB0687
CmoCh02G003520Cla97C11G210430Watermelon (97103) v2cmowmbB587
CmoCh02G003520Bhi10G001530Wax gourdcmowgoB0736
CmoCh02G003520CsGy2G012940Cucumber (Gy14) v2cgybcmoB220
CmoCh02G003520Carg27207Silver-seed gourdcarcmoB1115
CmoCh02G003520Carg25966Silver-seed gourdcarcmoB0585
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G003520CmoCh20G008000Cucurbita moschata (Rifu)cmocmoB404
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G003520Cucurbita moschata (Rifu)cmocmoB388
CmoCh02G003520Cucurbita moschata (Rifu)cmocmoB416
CmoCh02G003520Cucumber (Gy14) v1cgycmoB1053
CmoCh02G003520Wild cucumber (PI 183967)cmocpiB644
CmoCh02G003520Cucumber (Chinese Long) v2cmocuB633
CmoCh02G003520Melon (DHL92) v3.5.1cmomeB552
CmoCh02G003520Watermelon (Charleston Gray)cmowcgB530
CmoCh02G003520Watermelon (97103) v1cmowmB580
CmoCh02G003520Cucumber (Gy14) v2cgybcmoB944
CmoCh02G003520Silver-seed gourdcarcmoB0436