MELO3C020759 (gene) Melon (DHL92) v3.5.1

NameMELO3C020759
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description40S ribosomal protein S12
Locationchr11 : 4278482 .. 4280732 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACCGATCAAACAACGTTAGATCACCAACACAGAAGTAGGGTTTTTCATCGGCACATAAAAACCCTCACTTCTTCTTCATAAAAACCCTCACTTCTTCTTGACCTAATTCGCGCCGTTGATCTCCGGTTCGATCGGTTTCTACGCTGTAATCTCAAGCTATCTCCTACCTTATCCTTCCCTCTCTTTTTCTTCTTCTTCTTCGTATATGCATATCTTCAAATTTGCTGCTTTTTTTGTCTGATTATTCATCTGGGTTTGTTTGCAACAGGAAGGAGAAAGAATTTCAAATCAAGAAGAAAAATGTCAGCGTGAGTGGAATTCTGTTTATTATACGAGCTGCTAGCTTCCCTTTAAATTCATATGGTTGTTTTTATTTTTTTAAGCTGTTGAATGCTCGCCCCCAATTCTTTTTGTTTTTTTTTTTGCTTGTTTTCTTTGTATACTTGTAGTCATCAGCGATGCCTTGTGTTTTGTAAAGTGGAATCTGCAGGTTGTAATCAATTATTTGAGTGTCCACTTGTCTAGATTATGAATATGAAAAAAGTGATGAATGGTAACTTGATTGGTGAAGGTGGAGCAATAAATGTAATGCTTTGAGATGAATATTGTATGTTATGGACTTGGTACATATTGAATATTGAACTTTGAACTGAAATATGTTATTTGTTTGTGGATTTGTTACAATACTTTGTTGGGGATTGATATATATTGTCTTAGGAGCCAATATCTAATGAACTACTATTTAGCATCCTTTTGCTATTGGATCAGTTTTTGTTGCAAGTAGCTATATATTGCCTTCTATTGCTTGATTGCCGTATTGTGCAGTGGATATATTATGATCCCTTATAATTAGATTTCTTATGCAGTGATGAAGGTGCAGTTGTTGCCGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCATTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGTGGTCTACATGAAAGTGCTAAAGCAATTGAGAAACATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTCGTCAAGGCACTTTGTGCCGAGCACAATGTAAACCTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAATGGGCTGGTGTAAGTATTTAATCTGTTTAGCCACCGAGATGAAAATGTTTTAGCTTTTGGTTTTGTTTTTTTTTTTGCTATCTCTGCCATCGGTTGTATTGTAATTGACAATTGTTCTACTATGATTGAACCTGTACCTGCCACTACTTAGCTAGATGTTTTTTTTACCTGCTGATACTTAGCTTCATGTATCACGATGTGTTTTTACTTGCTTGCCTCGATTCAGCTCGTCTTCTTTCTTCTTCTTGGTGTTCTTTGAAAGGCTAATTATTCTATTCACGATATCAGTTTGTATTGCAGTACTCTCATTTTCTATTTTGTTGTCTTGTTCTCTGAAATTCCTTCAGTTACCGTTTCTTGTATTTTTGAGCATCTGTTTTTATTATATCAATGAAAGGCCCTGCTTCTTTTATGTATATATCCATGCAAAATCCACAAAACCTTTTCTCACTAACATTTCCATTGGGAAAATTCGTTTTTTGCTTGTGATATTTGCACTCTACACCATATATTTTAGTTTGATTTCAAGATGTGATTAATATGTGCATATTAGCACTCAGATCAAAAGTTTTCCCTTATCTGAGTTCTGGATAATGAGTTATTTTCTTAATGTTTGGTCTAATGCAGCTTTGCAAGATTGATTCCGAAGGAAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGGTACGTTGTGTTCATCACCTGTGGAGAAAATGTTCTATCCCATCTTTTCTTTTATTCTCGATACAGTTTTTGTTTACTTGAAATTTGAATTTCCATCCCCAGGACTTTGGGGAAGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAATTGATTACCCGAATGGTGGTGTTTATTCGTATCACTAAGAAAGTTTTTGATCTTTAGTTATGTTTAGGTTGGTTCCCTGGTGCTGCTGAACACGTTTTTACCCTGTAATGTTTTTCTTTGTTATATTGATTGATGGAAAAATTTTCGGCAAACAGAAACACAATTTGTTTATCAAGAGTCTCCTTGCCAAGGGTATAAGGGAATTTAATTTTATCATATGCTAACAAGTTTTAGGATTTACCTATTCCCTTT

mRNA sequence

GAACCGATCAAACAACGTTAGATCACCAACACAGAAGTAGGGTTTTTCATCGGCACATAAAAACCCTCACTTCTTCTTCATAAAAACCCTCACTTCTTCTTGACCTAATTCGCGCCGTTGATCTCCGGTTCGATCGGTTTCTACGCTGAAGGAGAAAGAATTTCAAATCAAGAAGAAAAATGTCAGCTGATGAAGGTGCAGTTGTTGCCGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCATTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGTGGTCTACATGAAAGTGCTAAAGCAATTGAGAAACATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTCGTCAAGGCACTTTGTGCCGAGCACAATGTAAACCTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAATGGGCTGGTCTTTGCAAGATTGATTCCGAAGGAAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGGACTTTGGGGAAGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAATTGATTACCCGAATGGTGGTGTTTATTCGTATCACTAAGAAAGTTTTTGATCTTTAGTTATGTTTAGGTTGGTTCCCTGGTGCTGCTGAACACGTTTTTACCCTGTAATGTTTTTCTTTGTTATATTGATTGATGGAAAAATTTTCGGCAAACAGAAACACAATTTGTTTATCAAGAGTCTCCTTGCCAAGGGTATAAGGGAATTTAATTTTATCATATGCTAACAAGTTTTAGGATTTACCTATTCCCTTT

Coding sequence (CDS)

ATGTCAGCTGATGAAGGTGCAGTTGTTGCCGAGGCTCCGGCCCCAGCTCTTGGTGAGCCAATGGACATTGAGACTGCATTGCAACTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGTGGTCTACATGAAAGTGCTAAAGCAATTGAGAAACATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTCGTCAAGGCACTTTGTGCCGAGCACAATGTAAACCTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAATGGGCTGGTCTTTGCAAGATTGATTCCGAAGGAAAGGCTAGGAAGGTTGTTGGGTGCTCTTGTGTTGTAGTTAAGGACTTTGGGGAAGATCATGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAATTGA
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0009521 photosystem
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016168 chlorophyll binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU44910melon EST collection version 4.0transcribed_cluster
MU53147melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020759T2MELO3C020759T2mRNA
MELO3C020759T1MELO3C020759T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU44910MU44910transcribed_cluster
MU53147MU53147transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 85..106
score: 3.2E-26coord: 110..123
score: 3.2E-26coord: 30..43
score: 3.2E-26coord: 44..60
score: 3.2
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 7..140
score: 7.4
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 26..44
scor
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 26..119
score: 7.4