Carg25966 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25966
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S12
Location	Cucurbita_argyrosperma_scaffold_284 : 150126 .. 151309 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTGATGAAGGTGCAGTTCTTGTTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTCAAGGCACTTTGTGCGGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTGTTTATTCTATCTAGCCATGGAGATAAAATTGGTTTAACTTTTGCTGGGTTTTTTACTATGATTGAACCTATACCTGCCAATGCTTGGCTTAATGTTCTTACCTTTTGATACTTAAACATGATATAATCTCTTCATGTAGAATAAAAAAGCCTTTCTTTTCCCCTCCTGTTTCCCGCCTAACACATCACCATTGGGAGAATTTGTTTTTTCTTGTAATATTTGCATTCTACATCATATGCTTGATTTTAGTTTCAAGATGCAACTAATATGTGTATACCAGCACTACTACCAAATGCTTTCCCTCGTCTGAGTTCACGATAAATATGCATATTCATTTTCTTCACATTTGGTCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGTACGTTGTGTGTCCATCGCATCGCATGGAGAAAATGATCTATTCCATGTTCTTTTGTTTTCAATACAATTTTTGTTGTTTACTTGAATTTTGAATCTCTACCCCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATTACAATGGTGTTTGTTGGTGTCAGTAAGAAAGTTTTTGATCTTTAGTTATGCTTAGGTTGGTTCCCTGTTGCTGCTGAACACGTTTTTACCCTATAATGTTTTTCTTTGTTCATTGATTGGAAAGATTTTTGGCAAACAGAACACAATTTATTTATGAAGAGAGTCTCCTTGCCAAGGGTAAAAGGGAATTGATTTTTTTTTATCATCTATTTACTAGTTATTAAGATCTACCTATTTCTGTTCTTTATGGAGGATAATGCAAGTCTTCCTTAGTTCTTTTCCT

mRNA sequence

ATGCAGTGATGAAGGTGCAGTTCTTGTTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTCAAGGCACTTTGTGCGGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATTACAATGGTGTTTGTTGGTGTCAGTAAGAAAGTTTTTGATCTTTAGTTATGCTTAGGTTGGTTCCCTGTTGCTGCTGAACACGTTTTTACCCTATAATGTTTTTCTTTGTTCATTGATTGGAAAGATTTTTGGCAAACAGAACACAATTTATTTATGAAGAGAGTCTCCTTGCCAAGGGTAAAAGGGAATTGATTTTTTTTTATCATCTATTTACTAGTTATTAAGATCTACCTATTTCTGTTCTTTATGGAGGATAATGCAAGTCTTCCTTAGTTCTTTTCCT

Coding sequence (CDS)

ATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTCAAGGCACTTTGTGCGGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGA

Protein sequence

MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS

Homology

[Close]

BLAST of Carg25966 vs. NCBI nr
Match: XP_022944351.1 (40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 245.4 bits (625), Expect = 1.0e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Carg25966 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 1.0e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Carg25966 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.4 bits (625), Expect = 1.0e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Carg25966 vs. NCBI nr
Match: XP_004147008.1 (PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >KGN61872.1 hypothetical protein Csa_2G258680 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 2.3e-61
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS+
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg25966 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 2.3e-61
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS+
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg25966 vs. TAIR10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 197.6 bits (501), Expect = 4.4e-51
Identity = 92/120 (76.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 85  HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Carg25966 vs. TAIR10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 191.4 bits (485), Expect = 3.2e-49
Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 85  HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Carg25966 vs. Swiss-Prot
Match: sp|Q9XHS0|RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.2e-51
Identity = 95/119 (79.83%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDYVKLVKALCAE
Sbjct: 24  MDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAE 83

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           HNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E L+IVQ++V S
Sbjct: 84  HNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142

[Close]

BLAST of Carg25966 vs. Swiss-Prot
Match: sp|Q9SKZ3|RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.9e-50
Identity = 92/120 (76.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 85  HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Carg25966 vs. Swiss-Prot
Match: sp|Q9S9P1|RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.7e-48
Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+
Sbjct: 25  MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCAD 84

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH++S
Sbjct: 85  HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Carg25966 vs. Swiss-Prot
Match: sp|Q76I81|RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAE
Sbjct: 12  MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH 117
           H +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  +++++
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127

[Close]

BLAST of Carg25966 vs. Swiss-Prot
Match: sp|P84175|RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAE
Sbjct: 12  MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH 117
           H +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  +++++
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127

[Close]

BLAST of Carg25966 vs. TrEMBL
Match: tr|A0A1S3C6L3|A0A1S3C6L3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS+
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg25966 vs. TrEMBL
Match: tr|A0A0A0LM61|A0A0A0LM61_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS+
Sbjct: 81  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg25966 vs. TrEMBL
Match: tr|A0A1S3CDM3|A0A1S3CDM3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 9.7e-61
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS
Sbjct: 81  HNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Carg25966 vs. TrEMBL
Match: tr|A0A0A0KA08|A0A0A0KA08_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 9.7e-61
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE
Sbjct: 21  MDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 80

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS 120
           HN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS+
Sbjct: 81  HNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg25966 vs. TrEMBL
Match: tr|W9R0I8|W9R0I8_9ROSA (40S ribosomal protein S12 OS=Morus notabilis OX=981085 GN=L484_013506 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.2e-56
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAE 60
           MDI TALQLVLRKSLAHGGL+RGLHESAK IEKHAAQLCVL EDC+QPDYVKLVKALCA+
Sbjct: 22  MDITTALQLVLRKSLAHGGLIRGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAD 81

Query: 61  HNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSS 120
           HNVN++TVPSAKTLGEWAGLCKIDSEGKARKVVGC+CVVVKDFGEDHEALH+VQ+HV +
Sbjct: 82  HNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCACVVVKDFGEDHEALHVVQQHVKA 140

The following BLAST results are available for this feature:

BLAST of Carg25966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944351.1	1.0e-61	100.00	40S ribosomal protein S12-like [Cucurbita moschata]	[more]
XP_022986724.1	1.0e-61	100.00	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_023512603.1	1.0e-61	100.00	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
XP_004147008.1	2.3e-61	99.17	PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus] >XP_008457630.1 PRED...	[more]
XP_022954225.1	2.3e-61	99.17	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]

BLAST of Carg25966 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32060.1	4.4e-51	76.67	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	3.2e-49	77.31	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of Carg25966 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XHS0\|RS12_HORVU	4.2e-51	79.83	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
sp\|Q9SKZ3\|RS122_ARATH	7.9e-50	76.67	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
sp\|Q9S9P1\|RS121_ARATH	5.7e-48	77.31	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
sp\|Q76I81\|RS12_BOVIN	1.3e-36	59.48	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
sp\|P84175\|RS12_CHICK	1.3e-36	59.48	40S ribosomal protein S12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2	[more]

BLAST of Carg25966 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6L3\|A0A1S3C6L3_CUCME	1.5e-61	99.17	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1	[more]
tr\|A0A0A0LM61\|A0A0A0LM61_CUCSA	1.5e-61	99.17	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
tr\|A0A1S3CDM3\|A0A1S3CDM3_CUCME	9.7e-61	97.50	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1	[more]
tr\|A0A0A0KA08\|A0A0A0KA08_CUCSA	9.7e-61	97.50	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1	[more]
tr\|W9R0I8\|W9R0I8_9ROSA	3.2e-56	89.08	40S ribosomal protein S12 OS=Morus notabilis OX=981085 GN=L484_013506 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR029064	L30e-like
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR000530	Ribosomal_S12e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25966-RA	Carg25966-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 10..23 score: 54.55 coord: 90..103 score: 81.17 coord: 65..86 score: 57.85 coord: 24..40 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 1..119
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 6..24
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 6..99 e-value: 4.6E-28 score: 96.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	G3DSA:3.30.1330.30		coord: 1..120 e-value: 1.1E-57 score: 194.9
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	SSF55315	L30e-like	coord: 2..118
None	No IPR available	PANTHER	PTHR11843:SF3	SUBFAMILY NOT NAMED	coord: 1..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25966	Cla016624	Watermelon (97103) v1	carwmB0427
Carg25966	Csa2G258680	Cucumber (Chinese Long) v2	carcuB0463
Carg25966	ClCG11G003740	Watermelon (Charleston Gray)	carwcgB0422
Carg25966	CSPI02G12910	Wild cucumber (PI 183967)	carcpiB0468
Carg25966	CmaCh02G003500	Cucurbita maxima (Rimu)	carcmaB0600
Carg25966	CmaCh20G007890	Cucurbita maxima (Rimu)	carcmaB0599
Carg25966	CmoCh02G003520	Cucurbita moschata (Rifu)	carcmoB0585
Carg25966	CmoCh20G008000	Cucurbita moschata (Rifu)	carcmoB0584
Carg25966	Lsi10G004370	Bottle gourd (USVL1VR-Ls)	carlsiB390
Carg25966	Cp4.1LG05g13040	Cucurbita pepo (Zucchini)	carcpeB0606
Carg25966	Cp4.1LG16g02910	Cucurbita pepo (Zucchini)	carcpeB0605
Carg25966	CsGy2G012940	Cucumber (Gy14) v2	carcgybB0439
Carg25966	CsaV3_2G015470	Cucumber (Chinese Long) v3	carcucB0463
Carg25966	Cla97C11G210430	Watermelon (97103) v2	carwmbB0454
Carg25966	Bhi10G001530	Wax gourd	carwgoB0518

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25966	Carg27207	Silver-seed gourd	carcarB443

The following block(s) are covering this gene:

None