CmoCh02G003490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G003490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SAUR-like auxin-responsive protein family
Location	Cmo_Chr02 : 1750420 .. 1754910 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTGGTGCTCCTAATGATAAGTATGGAGAAAGGTTTACCGAGCGCTTTCGTGTCTTAAATGGTAGGAAATACTAAGCTCCAAATGATCATTTTGTGCTACTAGTGATCAGTATAGAGAAAAGGTTCAAATCTGAGCTGAATTTGAACCAATCCAATGACAAAAGGAAAGACGCAGTTGTGCCAAATGATCAAAGGGATTATACGCTGAATTTTTAATTGGTTCAAAAACCTGACAAGATATGTGTTCTGGTGTAAACCTGATATATTAAATCTGATCATATTTAGATGCTCACAATAAACAAGTCAACGTGCTCGAGGCTGAAAACGATCGTAGAACTTTGTGGATGATTTATGCCTCTAAGAATTGGCATTTTTTGACTAAGCTATGTACTTTGACTTGGGCTTTTTGTTCTCCTTAATGAGAACCATTCTTTGCTATGGTCCATAATTTGGTACATATAAGGCCTGCAGAGTCTCCTTTGACCTAGACATTGACGTAGCTGGTCACTCTCTCATGGAAAGCCAATCACATGGAGGTTCTGTTCTTCCATTTTCAACGTAATGCACTCTGTCTGTAAGCATTTAATTCAGTGTAAAAGCTTGGACAATGATTTGACTTTTCATGATCGAACAACTTAGCCAATGAAAATGGAAATTTGTGGTGTAACTGCGGAGAATGTGAAGAGAGACAGAGAAGGAAATTGGTGTGTCTTTTCTAAGTTGAACAAAACCATGTGAAGTGACCCACTCAAATACCTAACCATCAGACTTCAATACCCCACTTTGCCATTTGAATTCCATCGCTCACAGCATAACTCTTTCTTCCAAAACTCTATAAATTTGAACATCAAATGAGCCTTCAAACACCAAATTCAACTCATTCCTAGTGTTCTACACTAATCAGATCAAAGCTTTAGACTTTTCTCAGTCTTTCATCTCAAGCAAATGGGTATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAGATCCTAAAGATGCAGTCAGGTTTTACCAAAAGTCAGCTGGATGTGCCAAAAGGTCATGTGGCTGTTTATGTGGGAGAGATCCAAAGAAAGCGGTTCGTGGTTCCAATTTCTTACTTAAACCATCCATCATTCCAAAAGCTACTCAGCCATGCAGAAGAAGAGTTTGGCTTCCATCATCCACAAGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCGTTGATCTCACCTCTAGACTGCACGTATCTTGAAGGATGCAGAAGAAAGGACAATCATATGCCATTTTTGACAATTTTTTCCGACTCATTTTACTTTTCGACACATACTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTGTAAATGAGTTGGCATTGTAAAGTTACTTATACCACAGGATTAATGAAAATAGACCGATTCAACATCAACTTCTGTATATCATTTTTTCTGCTAATCTGTGCTTTCCAACTTCAAACGTTAAACTGATCTGAACAAAATTGGTGTCCTGTGCTAATTTATGAACTACTCTAATATAGACAATCCTAAATCTATCTGTGTAGCAACTCTTTAGTGAATATGTTATTCAGTAACTATACAGTGTTGTGGTAGAGCAGTCTCATCTGTTCATCAAAAGTCCGAAGATAGAAATTATAGCATAGCAGATGTTAAATTTTATCATAGATGAAGTTTGTCCCACTCATGGATTTTGAGATATCTAACTTCCTTGTGTGTTGTCCGATTTCTTACTCGATCTTCAAAGCAGACTGACTTCTCCTACTCCTCCTCCTTTAGGATAGGATCGTCGTTGGTCATTCTTTCGCTAATGATCTAATGAGCTTTCACTAATGATCTAATGAGGTCACTATTTGATAGTCATTCGCGCAAACGCGCGAGGGACGAGACTTTCTATTGCTTGTTTTTCACTACCAAGACAATGGTCTCTCTCATCTATAAGCAAGACAATGACGCTGAACTGAAGAAAGCTCAATGTGAAAGAAGCAAAAGATCCACTTCCGCCACGAAAGGAGAGATTCGTAAATATCCAGTTTAAAAAGTATATAGAACTTTCGTTTGAATTTCCTGCAACAATCAGGATTTGACACAACAAGGAACTGAAAATATTGTAGTGGGAACATCATAATTCTATCCGACATCTTTCCCTCACCAATGGACAGCTAGTTCCAGCTATAGAAGTTGCTTGAAGTGGATAAAACTACTACATTTAACAAATATAAACATGATTAGATTCTGTATCCTTTGATTTGCAATAAGATGCATTTGATGTCTCTCTTGTTCTTATTCAACAAGGGCACTATGCCAATGATGTAACCATTTCTTTCTTACTGTGAAAGTGATCTCCTTGATATCTTGTTTTTTTCTTTATTCGAGCATCCAGTTCAGCTAACCAAGCTTGGTCGCTGGAATGGATAATGACTTGAACCAAACAACTGGGCTGGCATTGCATACAACCAAGAGAGAGGTGAAAAATCTTTTATAAGTTGGGAAGATCCCTAATAGTCCTCTTAGATACCTAACCACCAGTCTTAAAGTGCCCATTGGAAAAGCACCAACCATCAGCAAAACTATTTTCATGAACTATAAATAAGGATATCGAGTAAACTTTAAAACAGTCATTTACTACTTCCTCTTCAAATTTGTTCCACATCAATTGAAACAGCAAGCTTAGTAATGGGAATCTTTCCATTCCAGATTCTTTTTGTCAAGCAAATTCTAAAATGCCATCAGATTTCACCAAAAACCCGTATGTTTCAAAAGGTCATGTAGCATACGAAATGATTTGTGGTTCCGATATCATACTTGAATCATCCTTCATTCTAAAAGCTCCTTATGTATGCCGAGGAAGAGTTTGTATTCCGTCATCCTCAGGTTGTCAAACAATTCCTGGCAAAAAAGATGTCTTTCTTGATTTCATTTCTAGATTGGAAGTTTCTTAAAGATGAATGAAGAGGCAAAAGAAAATTCACCAAGTTTTGACACTTTTGCCCCTTGTTTTTTTGACTCGTTTATGAACTAAGATTAAAATGTTACAGGAAATCCAAGAACAAATCCTTCCAAAATGTTAACAAACGACTCTGATAAATTCTATGTCATGTAAGCCAAGTATCTTCTTGCTACTGATATATGACTAAATAGGCAGAAATGATAGAATAGTCACGATTTAGTGTTGCATTGAAACAGTTGTTAGTAATTGAAACAGTAAAATTATGACTATCAAATACATGCCTATGGTAGGGGCCTTCAGTTTCAATTAAGAAAATATGGTTCACATATGGGGGATTGAAAAAGATTAAATTTATCCAAACCTGTTTATCCTTTTTCTGCTCAAATGAGCATCGTTAGGGAACACAGCTAATACACTTTGCATTTTCATGGTCATTCATTTATTCAAGAAAAACCTTTGTGCTCAGCTGAATTCAAGTGAAGTAGCAAGAACATGAAGATGAAAAACCATTCAGGAGAATAAAATTCATGAAGGGGCACAGTGTTCTTGTAAGAAAATGTGATTATCTATTTCAATTTTCTATCTCTTTTCTGCTACTCAACATTTACATGTAGAAGCTAACTCTACATTGATGTTCTACATTTAACTATGTGAAAAAATCGAAGGGAATCTGACAAAATTGTGAGGAGGATTGTTTTTCTTCTCTCTTTCAGCAAGATTGCAGCTTGGATGTGAGATTGATGAAGACATCTTCTCTGCAAGGAATTGTAAGACCTCCAGTTGGATGTTTAAATCCAAATTCTTCTTCGGCACGGTTGAGCAAAGCAGAAAAAGAAGGATGGTTTAAGTATGCTATTGGAACTACAAATCTCTTTGTCTCAATATCTCCCACATAAACTGCAATATGGCCTTTGGGAACGCCACACCGGTTTCTGGAAGAAGCGGTATGCATTTTGACAGCTTGCTTGGCATTGAGAAGAAGTGAAAGTAGTCTGATTCCCATTTTCCGCTCGATGCAGATCAAAAAGTTGGGAAGTGTAGTTCTTGAATGAAGATGTGCTTGAAATTTGAGTTGGAGATTGAAGTTTATTTGAACCGTATTTATGGATTCAGAACGGAGAAGTGGTGAGAAGAAAACAGTATCAAGTTGGTCTTTAGGATGGCCTACTTCATAAATGCTCACATTGGTTGCTTATTTGGTTTGAATAGACGCACTTCATCATGTGCCCTAACAAACCATTGAGCAGTCCCATTTGCTCCAATGAGGTGCAGTTATAGTCCAAAAGGGAAAGTACAACGTTCTGAGGATTAATTGTTGCTCCATTTGTTTGTGAACTAATGGAAACAGTTGGACTATGACTTGACTTGTGATGAATGGAAACAATTGACCAATGAGCCTGAAATTAGTGGTATGAATTTCAGAGAATGTGCTGTGAGAGAAGAAAATTGGGTGCCTTTTTCTGAGATGAGGCAAAGCCATGTGAAGGGGTATTCTCAAATATACCCAACTACCAGACATCAGTACCCCACTTAG

mRNA sequence

ATGTCATCTGGTGCTCCTAATGATAAGTATGGAGAAAGGTTTACCGAGCGCTTTCGTGTCTTAAATGTCTTTCATCTCAAGCAAATGGGTATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAGATCCTAAAGATGCAGTCAGGTTTTACCAAAAGTCAGCTGGATGTGCCAAAAGGTCATGTGGCTGTTTATGTGGGAGAGATCCAAAGAAAGCGGTTCGTGGTTCCAATTTCTTACTTAAACCATCCATCATTCCAAAAGCTACTCAGCCATGCAGAAGAAGAGTTTGGCTTCCATCATCCACAAGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCGTTGATCTCACCTCTAGACTGCACACAATGGTCTCTCTCATCTATAAGCAAGACAATGACGCTGAACTGAAGAAAGCTCAATGTGAAAGAAGCAAAAGATCCACTTCCGCCACGAAAGGAGAGATTCATTCTTTTTGTCAAGCAAATTCTAAAATGCCATCAGATTTCACCAAAAACCCGTATGTTTCAAAAGGTCATGTAGCATACGAAATGATTTGTGGTTCCGATATCATACTTGAATCATCCTTCATTCTAAAAGCTCCTTATCAAGATTGCAGCTTGGATGTGAGATTGATGAAGACATCTTCTCTGCAAGGAATTACGCACTTCATCATGTGCCCTAACAAACCATTGAGCAGTCCCATTTGCTCCAATGAGTTGGACTATGACTTGACTTGTGATGAATGGAAACAATTGACCAATGAGCCTGAAATTAGTGGTATGAATTTCAGAGAATGTGCTGTGAGAGAAGAAAATTGGGTGCCTTTTTCTGAGATGAGGCAAAGCCATGTGAAGGGGTATTCTCAAATATACCCAACTACCAGACATCAGTACCCCACTTAG

Coding sequence (CDS)

ATGTCATCTGGTGCTCCTAATGATAAGTATGGAGAAAGGTTTACCGAGCGCTTTCGTGTCTTAAATGTCTTTCATCTCAAGCAAATGGGTATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAGATCCTAAAGATGCAGTCAGGTTTTACCAAAAGTCAGCTGGATGTGCCAAAAGGTCATGTGGCTGTTTATGTGGGAGAGATCCAAAGAAAGCGGTTCGTGGTTCCAATTTCTTACTTAAACCATCCATCATTCCAAAAGCTACTCAGCCATGCAGAAGAAGAGTTTGGCTTCCATCATCCACAAGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCGTTGATCTCACCTCTAGACTGCACACAATGGTCTCTCTCATCTATAAGCAAGACAATGACGCTGAACTGAAGAAAGCTCAATGTGAAAGAAGCAAAAGATCCACTTCCGCCACGAAAGGAGAGATTCATTCTTTTTGTCAAGCAAATTCTAAAATGCCATCAGATTTCACCAAAAACCCGTATGTTTCAAAAGGTCATGTAGCATACGAAATGATTTGTGGTTCCGATATCATACTTGAATCATCCTTCATTCTAAAAGCTCCTTATCAAGATTGCAGCTTGGATGTGAGATTGATGAAGACATCTTCTCTGCAAGGAATTACGCACTTCATCATGTGCCCTAACAAACCATTGAGCAGTCCCATTTGCTCCAATGAGTTGGACTATGACTTGACTTGTGATGAATGGAAACAATTGACCAATGAGCCTGAAATTAGTGGTATGAATTTCAGAGAATGTGCTGTGAGAGAAGAAAATTGGGTGCCTTTTTCTGAGATGAGGCAAAGCCATGTGAAGGGGTATTCTCAAATATACCCAACTACCAGACATCAGTACCCCACTTAG

Homology

[Close]

BLAST of CmoCh02G003490 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-23
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 40  AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGF 99
           AK+IL   +    +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10  AKKILSRSAAAVSAP---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGF 69

Query: 100 HHPQGGLTIPCKEDAFVDLTSRLH 124
            HP GGLTIPC ED F+++TSRLH
Sbjct: 70  DHPMGGLTIPCPEDTFINVTSRLH 90

[Close]

BLAST of CmoCh02G003490 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.4e-23
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 40  AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGF 99
           AK+IL   +G   +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10  AKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGF 69

Query: 100 HHPQGGLTIPCKEDAFVDLTSRL 123
            HP GGLTIPC ED F+++TSRL
Sbjct: 70  DHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of CmoCh02G003490 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-22
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 45  KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQG 104
           K+ S  T +    PKG +AVYVGE Q+KR++VPISYLN PSFQ LLS +EEEFGF HP G
Sbjct: 12  KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 105 GLTIPCKEDAFVDLTSR 122
           GLTIPC ED F+++TSR
Sbjct: 72  GLTIPCPEDTFINVTSR 88

[Close]

BLAST of CmoCh02G003490 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-22
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 45  KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQG 104
           K+ S  T +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +E+EFGF HP G
Sbjct: 12  KILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMG 71

Query: 105 GLTIPCKEDAFVDLTSRL 123
           GLTIPC ED F+++TSRL
Sbjct: 72  GLTIPCHEDTFINVTSRL 89

[Close]

BLAST of CmoCh02G003490 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.8e-22
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 45  KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGFHHPQG 104
           K+ S  T +    PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EEEFGF HP G
Sbjct: 12  KILSRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMG 71

Query: 105 GLTIPCKEDAFVDLTSRL 123
           GLTIPC ED F+++TSRL
Sbjct: 72  GLTIPCPEDTFINVTSRL 89

[Close]

BLAST of CmoCh02G003490 vs. TrEMBL
Match: A0A0A0LPI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258720 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.6e-43
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MG RLLSLVPHAKQILKMQSGFTK+QL+VPKGHVAVYVGEIQRKRFVVPISYLN PSFQ+
Sbjct: 1   MGFRLLSLVPHAKQILKMQSGFTKNQLNVPKGHVAVYVGEIQRKRFVVPISYLNDPSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LLSHAEEEFGFHHP GGLTIPCKEDAFVDLTSRL
Sbjct: 61  LLSHAEEEFGFHHPHGGLTIPCKEDAFVDLTSRL 94

[Close]

BLAST of CmoCh02G003490 vs. TrEMBL
Match: A0A0A0LLF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258700 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.2e-42
Identity = 84/94 (89.36%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MGIRLLSLVPHAKQILK+QSG TK+QLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSF++
Sbjct: 1   MGIRLLSLVPHAKQILKIQSGLTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFKQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LL HAEEEFGFHHPQGGLTIPCKEDAF ++TS+L
Sbjct: 61  LLCHAEEEFGFHHPQGGLTIPCKEDAFTEITSKL 94

[Close]

BLAST of CmoCh02G003490 vs. TrEMBL
Match: A0A0A0LIZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258760 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MGIRLLSLVP+ KQILK+QSGF K QLDVPKGHVA+YVGEIQRKRFVVPISYLNHPSFQ+
Sbjct: 1   MGIRLLSLVPYGKQILKIQSGFIKGQLDVPKGHVAIYVGEIQRKRFVVPISYLNHPSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LL+H+EEEFGFHHPQG LTIPCKEDAF+DLTSRL
Sbjct: 61  LLNHSEEEFGFHHPQGALTIPCKEDAFIDLTSRL 94

[Close]

BLAST of CmoCh02G003490 vs. TrEMBL
Match: A0A0A0LJ99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258740 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-40
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MG+ LL LVPHAK+ILKMQS FTK+QLDVPKGHVAVYVGEIQRKRFVVP+SYLN PSFQ+
Sbjct: 1   MGVPLLCLVPHAKKILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPVSYLNDPSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LLS AEEEFGFHHP GGLTIPCKEDAFVDLTSRL
Sbjct: 61  LLSRAEEEFGFHHPHGGLTIPCKEDAFVDLTSRL 94

[Close]

BLAST of CmoCh02G003490 vs. TrEMBL
Match: A0A0A0LJA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258790 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.7e-39
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MGIR LSLVPH KQILKMQSG TK QL VPKGHVAVYVGEIQ KRFVVPISYLN  SFQ+
Sbjct: 1   MGIRFLSLVPHVKQILKMQSGLTKKQLGVPKGHVAVYVGEIQMKRFVVPISYLNDLSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LLS+AEEEFGFHHPQGGLTIPCKEDAFVDLTS+L
Sbjct: 61  LLSYAEEEFGFHHPQGGLTIPCKEDAFVDLTSKL 94

[Close]

BLAST of CmoCh02G003490 vs. TAIR10
Match: AT4G38840.1 (AT4G38840.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 118.6 bits (296), Expect = 6.5e-27
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILK----MQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHP 88
           M IR+  ++  +KQIL+    + S  + S LDVPKG++AVYVGE   KRFVVP+SYL+ P
Sbjct: 1   MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 89  SFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLH 124
           SFQ LL  AEEEFGF HP GGLTIPC E+ F+DL SR +
Sbjct: 61  SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

[Close]

BLAST of CmoCh02G003490 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEI-QRKRFVVPISYLNHPSFQ 88
           M IR+  ++  +KQ+LK  S  + + + +PKGH+AVYVGE+ Q++RFVVP++YL+HP FQ
Sbjct: 1   MAIRISRVLQSSKQLLKSLS-HSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 89  KLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLHT 125
           KLL  AEEEFGF HP GGLTIPC E  F+DL SRL T
Sbjct: 61  KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLST 96

[Close]

BLAST of CmoCh02G003490 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-25
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLD------VPKGHVAVYVGE---IQRKRFVVPIS 88
           MG+   ++    KQILK+ S   +++        VPKGHVAVYVGE   +++KRFVVPIS
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 89  YLNHPSFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFVDL-TSRL 123
           +LNHPSF++ LS AEEEFGF+HP GGLTIPC+E+ F+DL  SRL
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104

[Close]

BLAST of CmoCh02G003490 vs. TAIR10
Match: AT4G34800.1 (AT4G34800.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-24
Identity = 64/101 (63.37%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQ--RKRFVVPISYLNHPSF 88
           M IRL S V ++KQ  K QS        VPKGHVAVYVGE    +KRFVVPISYLNHPSF
Sbjct: 1   MAIRL-SRVINSKQSQKQQSR-------VPKGHVAVYVGEEMESKKRFVVPISYLNHPSF 60

Query: 89  QKLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLHTMVS 128
           Q LLS AEEEFGF+HP GGLTIPC+E+ FV L +    +VS
Sbjct: 61  QGLLSRAEEEFGFNHPIGGLTIPCREETFVGLLNSYGCIVS 93

[Close]

BLAST of CmoCh02G003490 vs. TAIR10
Match: AT5G18060.1 (AT5G18060.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-24
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 40  AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQKLLSHAEEEFGF 99
           AK+IL   +    +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10  AKKILSRSAAAVSAP---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGF 69

Query: 100 HHPQGGLTIPCKEDAFVDLTSRLH 124
            HP GGLTIPC ED F+++TSRLH
Sbjct: 70  DHPMGGLTIPCPEDTFINVTSRLH 90

[Close]

BLAST of CmoCh02G003490 vs. NCBI nr
Match: gi|659115596|ref|XP_008457635.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 4.7e-43
Identity = 87/94 (92.55%), Postives = 92/94 (97.87%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MGIRLLSLVPHAKQ+LKMQSGFTK+QLDVPKGHVAVYVGEIQ KRFVVPISYLNHPSFQ+
Sbjct: 1   MGIRLLSLVPHAKQLLKMQSGFTKNQLDVPKGHVAVYVGEIQSKRFVVPISYLNHPSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LLS+AEEEFGFHHPQGGLTIPCKED F+DLTSRL
Sbjct: 61  LLSYAEEEFGFHHPQGGLTIPCKEDTFLDLTSRL 94

[Close]

BLAST of CmoCh02G003490 vs. NCBI nr
Match: gi|700206757|gb|KGN61876.1| (hypothetical protein Csa_2G258720 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 8.0e-43
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MG RLLSLVPHAKQILKMQSGFTK+QL+VPKGHVAVYVGEIQRKRFVVPISYLN PSFQ+
Sbjct: 1   MGFRLLSLVPHAKQILKMQSGFTKNQLNVPKGHVAVYVGEIQRKRFVVPISYLNDPSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LLSHAEEEFGFHHP GGLTIPCKEDAFVDLTSRL
Sbjct: 61  LLSHAEEEFGFHHPHGGLTIPCKEDAFVDLTSRL 94

[Close]

BLAST of CmoCh02G003490 vs. NCBI nr
Match: gi|778674175|ref|XP_011650154.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 8.8e-42
Identity = 84/94 (89.36%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MGIRLLSLVPHAKQILK+QSG TK+QLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSF++
Sbjct: 1   MGIRLLSLVPHAKQILKIQSGLTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFKQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LL HAEEEFGFHHPQGGLTIPCKEDAF ++TS+L
Sbjct: 61  LLCHAEEEFGFHHPQGGLTIPCKEDAFTEITSKL 94

[Close]

BLAST of CmoCh02G003490 vs. NCBI nr
Match: gi|659115592|ref|XP_008457632.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MGIRLLSLVPHAKQILKMQSGFTK++L+VPKGHVAVYVGEIQRKRFVVPISYLN PSFQ+
Sbjct: 1   MGIRLLSLVPHAKQILKMQSGFTKNRLNVPKGHVAVYVGEIQRKRFVVPISYLNDPSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LL+ AEEEFGFHHP GGLTIPCKEDAFVDLTSRL
Sbjct: 61  LLNRAEEEFGFHHPHGGLTIPCKEDAFVDLTSRL 94

[Close]

BLAST of CmoCh02G003490 vs. NCBI nr
Match: gi|700206761|gb|KGN61880.1| (hypothetical protein Csa_2G258760 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 1


Query: 29  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 88
           MGIRLLSLVP+ KQILK+QSGF K QLDVPKGHVA+YVGEIQRKRFVVPISYLNHPSFQ+
Sbjct: 1   MGIRLLSLVPYGKQILKIQSGFIKGQLDVPKGHVAIYVGEIQRKRFVVPISYLNHPSFQQ 60

Query: 89  LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 123
           LL+H+EEEFGFHHPQG LTIPCKEDAF+DLTSRL
Sbjct: 61  LLNHSEEEFGFHHPQGALTIPCKEDAFIDLTSRL 94

The following BLAST results are available for this feature:

BLAST of CmoCh02G003490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU23_ARATH	3.2e-23	61.90	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1	[more]
SAU24_ARATH	5.4e-23	62.65	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU20_ARATH	2.0e-22	64.94	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU22_ARATH	3.5e-22	62.82	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU19_ARATH	7.8e-22	62.82	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1	[more]

BLAST of CmoCh02G003490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPI0_CUCSA	5.6e-43	93.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258720 PE=4 SV=1	[more]
A0A0A0LLF1_CUCSA	6.2e-42	89.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258700 PE=4 SV=1	[more]
A0A0A0LIZ9_CUCSA	1.4e-41	88.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258760 PE=4 SV=1	[more]
A0A0A0LJ99_CUCSA	2.6e-40	88.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258740 PE=4 SV=1	[more]
A0A0A0LJA3_CUCSA	3.7e-39	88.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258790 PE=4 SV=1	[more]

BLAST of CmoCh02G003490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38840.1	6.5e-27	58.59	SAUR-like auxin-responsive protein family	[more]
AT2G21210.1	1.1e-26	58.76	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	2.7e-25	56.73	SAUR-like auxin-responsive protein family	[more]
AT4G34800.1	1.0e-24	63.37	SAUR-like auxin-responsive protein family	[more]
AT5G18060.1	1.8e-24	61.90	SAUR-like auxin-responsive protein family	[more]

BLAST of CmoCh02G003490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115596\|ref\|XP_008457635.1\|	4.7e-43	92.55	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|700206757\|gb\|KGN61876.1\|	8.0e-43	93.62	hypothetical protein Csa_2G258720 [Cucumis sativus]	[more]
gi\|778674175\|ref\|XP_011650154.1\|	8.8e-42	89.36	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115592\|ref\|XP_008457632.1\|	1.5e-41	91.49	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|700206761\|gb\|KGN61880.1\|	2.0e-41	88.30	hypothetical protein Csa_2G258760 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003490.1	CmoCh02G003490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 39..121 score: 4.2
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 30..126 score: 1.7
None	No IPR available	PANTHER	PTHR31929:SF13	SUBFAMILY NOT NAMED	coord: 30..126 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G003490	CmaCh20G007860	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G003490	CmaCh02G003400	Cucurbita maxima (Rimu)	cmacmoB619

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G003490	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G003490	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G003490	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G003490	Cucumber (Gy14) v2	cgybcmoB220
CmoCh02G003490	Cucumber (Gy14) v2	cgybcmoB944
CmoCh02G003490	Melon (DHL92) v3.6.1	cmomedB606
CmoCh02G003490	Silver-seed gourd	carcmoB0436
CmoCh02G003490	Cucumber (Chinese Long) v3	cmocucB0687
CmoCh02G003490	Watermelon (97103) v2	cmowmbB587
CmoCh02G003490	Wax gourd	cmowgoB0736
CmoCh02G003490	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh02G003490	Cucurbita moschata (Rifu)	cmocmoB404
CmoCh02G003490	Cucurbita moschata (Rifu)	cmocmoB416
CmoCh02G003490	Cucumber (Gy14) v1	cgycmoB0483
CmoCh02G003490	Cucumber (Gy14) v1	cgycmoB1053
CmoCh02G003490	Wild cucumber (PI 183967)	cmocpiB582
CmoCh02G003490	Wild cucumber (PI 183967)	cmocpiB644
CmoCh02G003490	Cucumber (Chinese Long) v2	cmocuB577
CmoCh02G003490	Cucumber (Chinese Long) v2	cmocuB633
CmoCh02G003490	Melon (DHL92) v3.5.1	cmomeB527
CmoCh02G003490	Melon (DHL92) v3.5.1	cmomeB552
CmoCh02G003490	Watermelon (Charleston Gray)	cmowcgB515
CmoCh02G003490	Watermelon (Charleston Gray)	cmowcgB530
CmoCh02G003490	Watermelon (97103) v1	cmowmB580
CmoCh02G003490	Watermelon (97103) v1	cmowmB603