CmaCh02G003400 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G003400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SAUR-like auxin-responsive protein family
Location	Cma_Chr02 : 1674236 .. 1676668 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAGGATGCAGTCAGGTTTTACCCAAAGTCAGTTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATCCAAAGAAAGCGGTTCCTGGTTCCAATTTCTTACTTAAACCATCCGTTATTCCAAAAACTACTCAGCCATGCAGAGGAAGAGTTTGGCTTCCATCATCCACAGGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCCAGATTGTAAGTATCTTGAAGGATGCAGAAGAAAGGACAATCATCTGCCGTTTTTGACAATTTTTTTTCCGACTCATTTACTTTTCGACACAAACTAGATTGTTGTAGAGTGGGAAACCTTCCTACCTGTAAATGAGTTGCATTGTAAAGTTACTTATACCACAGGATAAATGAAAATAGACCAATTCAGCATAGACTTCTATATATCATTTCTTCTGGTGATCTGTGATTGCTAATCTGTGCTTTTGGGTAGAGAGAAATCTTTTAATTTTTTTAACTAAAGAATCATACTCAAAATCATTTAATACTTATGTATTTGATTGTGAACGCCGAAGAAGAGTTCAGATACAATCATTCTATTGGTGGTTTGACAATCCAGCAGAGGATATGCTTTTATCTCATTCAAGGCTGCATTGTTCTTGAAAGATTATGAAAAAAGAATTCCTCTGCCCCCTCAACCAGTTTTGCCCAACTTTTCTTTTTCTTTTTTCGTAGTTGTAGAATACGCCTAGATAGACAGTTCATGTAAATGAATAGAAAATTTTCCCATTGCATGTACATTATAACATGTATAGGCTATATTGACTGTGCGCTATAGCATAGCAGATGTTAAATTTTATCATAGATGAAGTTTGTCCCACTCATGGATTTTGAGATATCTAAGTGTCTTGTGTGTTAGTCAGATTTCTTCAAAGAAGACTGACTTCTTGTGAAATCTCACATCGGTTAGGGAGGAGAATGAAACCCGCTTTATAAGGGTGTGAAAACCTTTCCCTAGCATACGCATTTTAAAAACTTTGAGGGAAAACTCGAAAGAGAAAGCCCAAAGAGGATAATATCTACTAGCAATGGGTTTAAGTGGTTACACTTCTCCTACTCCCCCTTCTCCTTTAGGATAAGATTGTCGTTAATCCTTCTTTCACTAATGATCTAATGAGATCACCATTTGATAGTGATCCGCGCAAATACACGAGGGATGAGACTTTCTATCGCTTGCTTTTCACTGTTGCATGACGCTGAAATGAAGAAAGCTCATCATGTCATTAAATAAGATTATTTGGAAAATCTTGATTCCAAGCTTCGATTATTGATGTGAAAGAAGCAGAAGATCCACTTCCGCCACGAAAGGAGAGATTTGTAAATATTCAGTTTAAAAAGTACATAGAACTTTCGTCTGAATTTCCTCCAACAATCAGGATTTGACACAACAAGGAACTAAAAATATGGTAGTGGGAACATCATAATTCTATCCAACATCTTTCCCTCACCAATGCACAGCTAGTTCCAGCTATAGAAGTTGTTTGAAGTGGATGAAACTACTACATTTAACAAATATAAACATGATTAGATTCTTATTAAATGATTTGTCTTGAAGTACTAGGTGTACATGTACTTAGCTTCTGTATCCTTTGATTTACAATAAGATGCATTTGATATCTCTCTTGTCCTTATTCAACAAGGGCACTATGCCAATGATGTAACCATTTCTCTCTTACTGTGAAAGTGATCTCCTTGGTATCTTGTTTTTTTCTTTTATCGAACACATTCTTTATTCGAGCATCCAGTTCAGCTAACCAAGATTGGTCGCTGGAATGGATAATGACTTGAACCAAACAACTGGGCTGGCATTGCATACAACCAAGAGAGAGGTGAAAAATCTTTTATAAGTTGGGAAGATCCCTAATAGTCCTCTTAGATACCTAACCGCCCGTCTTAAAGTGCCCATTGGAAAAGCACCAACCATCAGCAAAACTATTTTCATGAACTATAAATAAGGATATCAAGTAAACAACAAAGTAAACTTCAAAACAGTCATTTACTACTTCCTCTTCAAATTTGTTCCACATCAATTGAAACAGCAAGCTTAGTAATGGGAATCTTTCCATTCCAGATTCTTTTTGTCAAGCAAATTCTAAAAATGCCATCAGGTTTCACCAAAAACCAGTATGTCCCGAAAGGTCATGTAGCAGTTTACGTGGGAGAGAGGCAAAGGAAACGATTTGTGGTTCCGATATCATACTTGAATCATCCTTCATTCAAACAGCTCCTTAAATATGCCGAGGAAGAGTTTGGTTTCCAGCATCCTCAAGGGGGTCTCACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACTTCTAGATTGCAAGTTTTCTAG

mRNA sequence

ATGGGAATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAGGATGCAGTCAGGTTTTACCCAAAGTCAGTTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATCCAAAGAAAGCGGTTCCTGGTTCCAATTTCTTACTTAAACCATCCGTTATTCCAAAAACTACTCAGCCATGCAGAGGAAGAGTTTGGCTTCCATCATCCACAGGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCCAGATTATTGGTCGCTGGAATGGATAATGACTTGAACCAAACAACTGGGCTGGCATTGCATACAACCAAGAGAGAGATTCTTTTTGTCAAGCAAATTCTAAAAATGCCATCAGGTTTCACCAAAAACCAGTATGTCCCGAAAGGTCATGTAGCAGTTTACGTGGGAGAGAGGCAAAGGAAACGATTTGTGGTTCCGATATCATACTTGAATCATCCTTCATTCAAACAGCTCCTTAAATATGCCGAGGAAGAGTTTGGTTTCCAGCATCCTCAAGGGGGTCTCACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACTTCTAGATTGCAAGTTTTCTAG

Coding sequence (CDS)

ATGGGAATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAGGATGCAGTCAGGTTTTACCCAAAGTCAGTTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATCCAAAGAAAGCGGTTCCTGGTTCCAATTTCTTACTTAAACCATCCGTTATTCCAAAAACTACTCAGCCATGCAGAGGAAGAGTTTGGCTTCCATCATCCACAGGGGGGTCTAACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCCAGATTATTGGTCGCTGGAATGGATAATGACTTGAACCAAACAACTGGGCTGGCATTGCATACAACCAAGAGAGAGATTCTTTTTGTCAAGCAAATTCTAAAAATGCCATCAGGTTTCACCAAAAACCAGTATGTCCCGAAAGGTCATGTAGCAGTTTACGTGGGAGAGAGGCAAAGGAAACGATTTGTGGTTCCGATATCATACTTGAATCATCCTTCATTCAAACAGCTCCTTAAATATGCCGAGGAAGAGTTTGGTTTCCAGCATCCTCAAGGGGGTCTCACAATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACTTCTAGATTGCAAGTTTTCTAG

Protein sequence

MGIRLLSLVPHAKQILRMQSGFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKREILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEEFGFQHPQGGLTIPCKEDAFIDLTSRLQVF

Homology

[Close]

BLAST of CmaCh02G003400 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.4e-24
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 116 REILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 175
           R +L  K+IL   +G       PKG +AVYVGE Q+KR++VP+SYLN PSF+ LL  +EE
Sbjct: 5   RSLLGAKKILSRSTG--AGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEE 64

Query: 176 EFGFQHPQGGLTIPCKEDAFIDLTSRLQ 204
           EFGF HP GGLTIPC ED FI++TSRLQ
Sbjct: 65  EFGFDHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmaCh02G003400 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-23
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 116 REILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 175
           R +L  K+IL   +  T     PKG +AVYVGE Q+KR++VPISYLN PSF+ LL  +EE
Sbjct: 5   RSLLGAKKILSRST--TAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEE 64

Query: 176 EFGFQHPQGGLTIPCKEDAFIDLTSRLQ 204
           EFGF HP GGLTIPC ED FI++TSR Q
Sbjct: 65  EFGFDHPMGGLTIPCPEDTFINVTSRFQ 90

[Close]

BLAST of CmaCh02G003400 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 116 REILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 175
           R +L  K+IL   +        PKG +AVYVGE Q+KR++VP+SYLN PSF+ LL  +E+
Sbjct: 5   RSLLGAKKILSRSTAAVSA--APKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSED 64

Query: 176 EFGFQHPQGGLTIPCKEDAFIDLTSRLQ 204
           EFGF HP GGLTIPC ED FI++TSRLQ
Sbjct: 65  EFGFDHPMGGLTIPCHEDTFINVTSRLQ 90

[Close]

BLAST of CmaCh02G003400 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 116 REILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 175
           R +L  K+IL   +        PKG +AVYVGE Q+KR++VP+SYLN PSF+ LL  +EE
Sbjct: 5   RSLLVAKKILSRSAAAVSAP--PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEE 64

Query: 176 EFGFQHPQGGLTIPCKEDAFIDLTSRL 203
           EFGF HP GGLTIPC ED FI++TSRL
Sbjct: 65  EFGFDHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of CmaCh02G003400 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 116 REILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 175
           R +L  K+IL   +        PKG +AVYVGE Q+KR++VP+SYL+ PSF+ LL  +EE
Sbjct: 5   RSLLGAKKILSRSTASA----APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEE 64

Query: 176 EFGFQHPQGGLTIPCKEDAFIDLTSRLQ 204
           EFGF HP GGLTIPC ED FI++TSRLQ
Sbjct: 65  EFGFDHPMGGLTIPCPEDTFINVTSRLQ 88

[Close]

BLAST of CmaCh02G003400 vs. TrEMBL
Match: A0A061E6C6_THECC (SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006746 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.5e-52
Identity = 111/206 (53.88%), Postives = 139/206 (67.48%), Query Frame = 1


Query: 1   MGIRLLSLVPHAKQILRMQSGFTQSQL----DVPKGHVAVYVGEIQRKRFLVPISYLNHP 60
           M IR+  ++ HAKQILR    F    +    DVP+G  AVYVGE Q++RF+VP S LN P
Sbjct: 1   MAIRVPRIM-HAKQILRQSKLFANQAVSTSTDVPEGFFAVYVGEGQKERFVVPTSVLNQP 60

Query: 61  LFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKR 120
            FQKLLS AEEEFGF+HP GGLTIPC+E+ FIDLTSRL           T  LA    +R
Sbjct: 61  SFQKLLSIAEEEFGFNHPMGGLTIPCREEVFIDLTSRLSWLTRTRKAMATRFLAKQILRR 120

Query: 121 EILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEE 180
            +    +     +  T  + VPKG +AVYVGE Q+KRFVVP+++LN PSF+ LL  +EEE
Sbjct: 121 SVFAASK-----AASTTGEVVPKGFLAVYVGETQKKRFVVPVTFLNQPSFQALLSKSEEE 180

Query: 181 FGFQHPQGGLTIPCKEDAFIDLTSRL 203
           FGF HP GGLTIPC+E+ FI++TS+L
Sbjct: 181 FGFDHPMGGLTIPCREETFINVTSQL 200

[Close]

BLAST of CmaCh02G003400 vs. TrEMBL
Match: A0A103Y0U0_CYNCS (Auxin responsive SAUR protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021302 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.3e-50
Identity = 106/203 (52.22%), Postives = 141/203 (69.46%), Query Frame = 1


Query: 5   LLSLVPHAKQILR--MQSGFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQKLL 64
           L+  +  AKQILR  + +G + + + VPKGH AVYVGE ++KRF+VP+S L+ P FQ+LL
Sbjct: 4   LMPRIIQAKQILRRSLSNGSSNTYMAVPKGHFAVYVGEQEKKRFVVPVSLLSQPAFQELL 63

Query: 65  SHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKREILFVK 124
             AEEEFG++HP GGLT+PC ED F DL S  L    D  L +T  + +      I+  K
Sbjct: 64  YRAEEEFGYNHPMGGLTVPCSEDIFTDLASPFLNKA-DCALLRTMAILM----PRIIQAK 123

Query: 125 QILKMP-SGFTKNQY--VPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEEFGF 184
           QIL+   S  + N+Y  +PKGH AVYVGE+++KRFVVP+S L+ P+F++LL  A++EFG+
Sbjct: 124 QILRRSLSNGSSNKYMVIPKGHFAVYVGEQEKKRFVVPVSLLSQPAFQELLYRADDEFGY 183

Query: 185 QHPQGGLTIPCKEDAFIDLTSRL 203
            HP GGLTIPC ED F DL SRL
Sbjct: 184 NHPMGGLTIPCSEDIFTDLASRL 201

[Close]

BLAST of CmaCh02G003400 vs. TrEMBL
Match: A0A118K004_CYNCS (Auxin responsive SAUR protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021304 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.3e-50
Identity = 106/203 (52.22%), Postives = 141/203 (69.46%), Query Frame = 1


Query: 5   LLSLVPHAKQILR--MQSGFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQKLL 64
           L+  +  AKQILR  + +G + + + +PKG+ AVYVGE ++KRF+VP+S L+ P FQ+LL
Sbjct: 86  LMPRIIQAKQILRRSLSNGSSNTYMAIPKGYFAVYVGEQEKKRFVVPVSLLSQPAFQELL 145

Query: 65  SHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKREILFVK 124
           + AEEEFG++HP GGLTIPC ED F DL S          L +T  + +     +I+  K
Sbjct: 146 NQAEEEFGYNHPMGGLTIPCSEDIFTDLASHCA-------LLRTMAILMP----QIIQAK 205

Query: 125 QILKMP-SGFTKNQY--VPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEEFGF 184
           QIL+   S  + N Y  +PKGH AVYVGE+++KRFVVP+S L+ P+F++LL  AEEEFG+
Sbjct: 206 QILRRSLSNGSSNTYMVIPKGHFAVYVGEQEKKRFVVPVSLLSQPAFQELLYRAEEEFGY 265

Query: 185 QHPQGGLTIPCKEDAFIDLTSRL 203
            HP GGLTIPC ED F DLTSRL
Sbjct: 266 NHPMGGLTIPCSEDIFTDLTSRL 277

[Close]

BLAST of CmaCh02G003400 vs. TrEMBL
Match: A0A061DYH2_THECC (SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006747 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 105/184 (57.07%), Postives = 124/184 (67.39%), Query Frame = 1


Query: 29  VPKGHVAVYVGEIQRKRFLVPISYLNHPLFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFI 88
           VPKG+ AVYVGE Q KRF++P+S+LN P FQ LLS +EEEFG+ HP GGL IPC ED F+
Sbjct: 14  VPKGYFAVYVGENQ-KRFVIPVSFLNRPSFQDLLSLSEEEFGYSHPTGGLRIPCDEDIFL 73

Query: 89  DLTSRLL---------VAGMDNDLNQTTGLALHTTKREILFVKQILKMPSGFTKNQYVPK 148
           D+TSRL          + G+    +   G  L  +K   LF  Q     S       VPK
Sbjct: 74  DVTSRLFSKTKIMEGELTGVRGGGSSNNGKILRQSK---LFANQAASTSSD------VPK 133

Query: 149 GHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEEFGFQHPQGGLTIPCKEDAFIDLT 204
           G VAVYVGE Q+KRFVVPIS LN PSF++LL  AEEEFGF HP GGLTIPC+E+ FIDLT
Sbjct: 134 GFVAVYVGESQKKRFVVPISVLNQPSFQKLLSIAEEEFGFNHPMGGLTIPCREEVFIDLT 187

[Close]

BLAST of CmaCh02G003400 vs. TrEMBL
Match: A0A103Y7U2_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_017573 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.4e-47
Identity = 103/207 (49.76%), Postives = 138/207 (66.67%), Query Frame = 1


Query: 13  KQILRMQSGFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQKLLSHAEEEFGFH 72
           K   ++QS   ++Q DVPKG++A+YVGE Q+ RF+VP+S+L HP FQ LL   E+EFG++
Sbjct: 18  KHFSKLQSLCNRNQWDVPKGYLAIYVGEKQKTRFVVPVSFLTHPQFQDLLRQTEDEFGYN 77

Query: 73  HPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKR--EILFVKQILKMPS- 132
           H  GGLTI C+EDAF DLTS+L ++   N L +     L T KR  +      ++++PS 
Sbjct: 78  HSMGGLTIHCQEDAFADLTSKLPIS-CYNMLYRIFPSNLTTGKRVCDRFLDMGLVRLPSL 137

Query: 133 -----------GFTKNQY---VPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 192
                           +Y   VPKGH+AVYVGE Q++RFVVPISYL+ P F+ LL++AEE
Sbjct: 138 IANARCFSKVNSLRSRKYQSDVPKGHLAVYVGEIQKRRFVVPISYLDQPLFQDLLRHAEE 197

Query: 193 EFGFQHPQGGLTIPCKEDAFIDLTSRL 203
           E GF HP GGLTI C EDAF++LT+RL
Sbjct: 198 ELGFDHPMGGLTICCHEDAFVELTARL 223

[Close]

BLAST of CmaCh02G003400 vs. TAIR10
Match: AT4G38840.1 (AT4G38840.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-26
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 1


Query: 1  MGIRLLSLVPHAKQILR----MQSGFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHP 60
          M IR+  ++  +KQILR    + S  + S LDVPKG++AVYVGE   KRF+VP+SYL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 LFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSR 94
           FQ LL  AEEEFGF HP GGLTIPC E+ FIDL SR
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

[Close]

BLAST of CmaCh02G003400 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 115.5 bits (288), Expect = 3.8e-26
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 122 KQILKMPSGFTKNQ-------YVPKGHVAVYVGER---QRKRFVVPISYLNHPSFKQLLK 181
           KQILK+ S   +N+       +VPKGHVAVYVGE+   ++KRFVVPIS+LNHPSFK+ L 
Sbjct: 13  KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLS 72

Query: 182 YAEEEFGFQHPQGGLTIPCKEDAFIDL-TSRLQ 204
            AEEEFGF HP GGLTIPC+E+ F+DL  SRLQ
Sbjct: 73  RAEEEFGFNHPMGGLTIPCREEVFLDLIASRLQ 105

[Close]

BLAST of CmaCh02G003400 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 115.2 bits (287), Expect = 4.9e-26
Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = 1


Query: 1  MGIRLLSLVPHAKQILRMQSGFTQSQLDVPKGHVAVYVGEI-QRKRFLVPISYLNHPLFQ 60
          M IR+  ++  +KQ+L+  S  + + + +PKGH+AVYVGE+ Q++RF+VP++YL+HP FQ
Sbjct: 1  MAIRISRVLQSSKQLLKSLS-HSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 KLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRL 95
          KLL  AEEEFGF HP GGLTIPC E  FIDL SRL
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

[Close]

BLAST of CmaCh02G003400 vs. TAIR10
Match: AT5G18080.1 (AT5G18080.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-25
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 116 REILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 175
           R +L  K+IL   +G       PKG +AVYVGE Q+KR++VP+SYLN PSF+ LL  +EE
Sbjct: 5   RSLLGAKKILSRSTG--AGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEE 64

Query: 176 EFGFQHPQGGLTIPCKEDAFIDLTSRLQ 204
           EFGF HP GGLTIPC ED FI++TSRLQ
Sbjct: 65  EFGFDHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmaCh02G003400 vs. TAIR10
Match: AT5G18020.1 (AT5G18020.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-24
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 116 REILFVKQILKMPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEE 175
           R +L  K+IL   +  T     PKG +AVYVGE Q+KR++VPISYLN PSF+ LL  +EE
Sbjct: 5   RSLLGAKKILSRST--TAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEE 64

Query: 176 EFGFQHPQGGLTIPCKEDAFIDLTSRLQ 204
           EFGF HP GGLTIPC ED FI++TSR Q
Sbjct: 65  EFGFDHPMGGLTIPCPEDTFINVTSRFQ 90

[Close]

BLAST of CmaCh02G003400 vs. NCBI nr
Match: gi|731387410|ref|XP_002271660.2| (PREDICTED: uncharacterized protein LOC100252964 [Vitis vinifera])

HSP 1 Score: 247.7 bits (631), Expect = 1.8e-62
Identity = 130/216 (60.19%), Postives = 162/216 (75.00%), Query Frame = 1


Query: 1   MGIRLLSLVPHAKQILRMQSGFTQSQLD-------VPKGHVAVYVGEIQRKRFLVPISYL 60
           MG R+ S++ HAKQIL++QS  T+SQL        VPKGH AVYVGE ++KRF+VPISYL
Sbjct: 1   MGFRMPSIL-HAKQILKLQSLLTRSQLSISATTAVVPKGHFAVYVGEAEKKRFVVPISYL 60

Query: 61  NHPLFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHT 120
           N+P FQK LSH+EEEFGF+HP GG+TIPCKE++FIDLTSRL    + +  ++T G    +
Sbjct: 61  NNPSFQKFLSHSEEEFGFNHPMGGVTIPCKEESFIDLTSRLNHCLLSSQ-SKTMGFRFPS 120

Query: 121 TKREILFVKQILKMPSGFTKNQ--------YVPKGHVAVYVGERQRKRFVVPISYLNHPS 180
               I+  KQILK+ S  ++ Q         VPKGH AVYVGE ++KRFVVPISYLN+PS
Sbjct: 121 ----IIQAKQILKLHSLLSRGQSSISATAAEVPKGHFAVYVGEAEKKRFVVPISYLNNPS 180

Query: 181 FKQLLKYAEEEFGFQHPQGGLTIPCKEDAFIDLTSR 202
           F++LL +AEEEFGF HP GG+TIPCKEDAFI+LTSR
Sbjct: 181 FQKLLSHAEEEFGFNHPMGGVTIPCKEDAFINLTSR 210

[Close]

BLAST of CmaCh02G003400 vs. NCBI nr
Match: gi|731387429|ref|XP_002271861.2| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100249577 [Vitis vinifera])

HSP 1 Score: 243.4 bits (620), Expect = 3.4e-61
Identity = 124/204 (60.78%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 1   MGIRLLSLVPHAKQILRMQSGFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQK 60
           MGIRL S+V  AKQIL++QS  ++++ +VPKGH AVYVGE+Q+KR++VP+SYLNHP F+ 
Sbjct: 1   MGIRLPSMV-QAKQILKLQSLLSRNRTEVPKGHFAVYVGEVQKKRYVVPLSYLNHPSFRS 60

Query: 61  LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKREILF 120
           LL  AEEEFGF HP GGLTIPC ++AFIDLTS+L       +  +  G+ L +    ++ 
Sbjct: 61  LLHQAEEEFGFTHPMGGLTIPCHKNAFIDLTSQL---NASXEEQRIMGIRLPS----VVQ 120

Query: 121 VKQILKMPSGFTKNQ-YVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEEFGF 180
            KQILK+    ++N+  VPKGH AVYVGE ++KR+VVPISYLNHPSF+ LL  AEEEFGF
Sbjct: 121 AKQILKLQLLLSRNRAEVPKGHFAVYVGEVEKKRYVVPISYLNHPSFRSLLCQAEEEFGF 180

Query: 181 QHPQGGLTIPCKEDAFIDLTSRLQ 204
            HP GGLTIPCKE AF+DL SRLQ
Sbjct: 181 NHPMGGLTIPCKEHAFLDLASRLQ 196

[Close]

BLAST of CmaCh02G003400 vs. NCBI nr
Match: gi|731387422|ref|XP_002271994.2| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100256454 [Vitis vinifera])

HSP 1 Score: 234.2 bits (596), Expect = 2.1e-58
Identity = 121/203 (59.61%), Postives = 152/203 (74.88%), Query Frame = 1


Query: 1   MGIRLLSLVPHAKQILRMQSGFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQK 60
           MGIRL S+V  AKQI ++QS  +++Q +VPKG+ AVYVGE++++R +VPISYLNHP F+ 
Sbjct: 1   MGIRLPSMV-QAKQIFKLQSYLSRNQAEVPKGYFAVYVGEVEKRRHVVPISYLNHPSFRS 60

Query: 61  LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKREILF 120
           LL  AEEEFGF+HP GGLTIPC EDAF DLT+RL  +       +  G+   +    ++ 
Sbjct: 61  LLCQAEEEFGFNHPMGGLTIPCNEDAFADLTTRLNASXGKG--RKIMGIRFPS----MVQ 120

Query: 121 VKQILKMPSGFTKNQ-YVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEEFGF 180
            KQILK+ S  ++NQ  V KGH AVYVGE ++KRFVVPISYLNHPSF+ LL  AEEE+ F
Sbjct: 121 AKQILKLQSLLSRNQAEVHKGHFAVYVGEVEKKRFVVPISYLNHPSFRSLLYQAEEEYRF 180

Query: 181 QHPQGGLTIPCKEDAFIDLTSRL 203
           +HP G LTIPC EDAFIDLTS+L
Sbjct: 181 KHPMGSLTIPCNEDAFIDLTSQL 196

[Close]

BLAST of CmaCh02G003400 vs. NCBI nr
Match: gi|731387405|ref|XP_010649235.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100246251 [Vitis vinifera])

HSP 1 Score: 227.3 bits (578), Expect = 2.5e-56
Identity = 124/217 (57.14%), Postives = 150/217 (69.12%), Query Frame = 1


Query: 1   MGIRLLSLVPHAKQILRMQSGFTQSQL-------DVPKGHVAVYVGEIQRKRFLVPISYL 60
           MGI L S+V  AKQIL++    T+SQL       +VPKGH  VYVGE QRKRF+VPISY 
Sbjct: 1   MGIHLPSIV-QAKQILKVDPLLTRSQLSISTKASEVPKGHFVVYVGEAQRKRFVVPISYR 60

Query: 61  NHPLFQKLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHT 120
           N+P F K LSHAEEEFGF HP GG+TI C E AFID+TS +          +   + + +
Sbjct: 61  NNPSFLKXLSHAEEEFGFKHPMGGVTILCNEGAFIDITSLI-------SFQRRRWVCMPS 120

Query: 121 TKREILFVKQILKMPSGFTKNQY--------VPKGHVAVYVGERQRKRFVVPISYLNHPS 180
               IL  KQILK+ S  T++Q         VPKGH AVYVGE ++KRFVVPISYLN+PS
Sbjct: 121 ----ILHAKQILKLQSLLTRSQLSVSSTTAEVPKGHFAVYVGETEKKRFVVPISYLNNPS 180

Query: 181 FKQLLKYAEEEFGFQHPQGGLTIPCKEDAFIDLTSRL 203
           F++LL +AEEEFGF HP GG+TIPCKE++FIDLTS L
Sbjct: 181 FQKLLSHAEEEFGFNHPMGGVTIPCKEESFIDLTSHL 205

[Close]

BLAST of CmaCh02G003400 vs. NCBI nr
Match: gi|720049302|ref|XP_010271401.1| (PREDICTED: uncharacterized protein LOC104607462 [Nelumbo nucifera])

HSP 1 Score: 224.9 bits (572), Expect = 1.2e-55
Identity = 121/206 (58.74%), Postives = 142/206 (68.93%), Query Frame = 1


Query: 1   MGIRLLSLVPHAKQILRMQS-GFTQSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPLFQ 60
           MGIRL  +V HAK ILR      +    +VPKGH AVYVGE Q+KRF+VPISYL+HP FQ
Sbjct: 1   MGIRLPGIV-HAKAILRRSLISPSAPTANVPKGHFAVYVGEAQKKRFIVPISYLSHPSFQ 60

Query: 61  KLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLLVAGMDNDLNQTTGLALHTTKREIL 120
            LL  AEEEFGFHHP GGLTIPCKED F+DLTSRL        L       +   K   +
Sbjct: 61  DLLGQAEEEFGFHHPMGGLTIPCKEDQFLDLTSRLNWNSRKLQLMAVRVPGMVHAKE--I 120

Query: 121 FVKQILK---MPSGFTKNQYVPKGHVAVYVGERQRKRFVVPISYLNHPSFKQLLKYAEEE 180
           F + +L+   +PS    +  VPKGH AVYVG  ++KRF+VPISYLNHPSF+ LL  AEEE
Sbjct: 121 FKRSLLRRNLLPSATMTD--VPKGHFAVYVGVNEKKRFIVPISYLNHPSFQDLLNKAEEE 180

Query: 181 FGFQHPQGGLTIPCKEDAFIDLTSRL 203
           FGF+HP GGLTIPCKE+ FI L S+L
Sbjct: 181 FGFKHPTGGLTIPCKEETFIGLASQL 201

The following BLAST results are available for this feature:

BLAST of CmaCh02G003400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU24_ARATH	7.4e-24	60.23	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU20_ARATH	3.7e-23	60.23	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU22_ARATH	1.1e-22	57.95	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU23_ARATH	1.8e-22	58.62	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1	[more]
SAU21_ARATH	1.8e-22	57.95	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1	[more]

BLAST of CmaCh02G003400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E6C6_THECC	4.5e-52	53.88	SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006746 PE=4 ...	[more]
A0A103Y0U0_CYNCS	9.3e-50	52.22	Auxin responsive SAUR protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021302...	[more]
A0A118K004_CYNCS	9.3e-50	52.22	Auxin responsive SAUR protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021304...	[more]
A0A061DYH2_THECC	1.1e-47	57.07	SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006747 PE=4 ...	[more]
A0A103Y7U2_CYNCS	7.4e-47	49.76	Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0...	[more]

BLAST of CmaCh02G003400 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38840.1	1.7e-26	59.79	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	3.8e-26	63.44	SAUR-like auxin-responsive protein family	[more]
AT2G21210.1	4.9e-26	57.89	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	4.2e-25	60.23	SAUR-like auxin-responsive protein family	[more]
AT5G18020.1	2.1e-24	60.23	SAUR-like auxin-responsive protein family	[more]

BLAST of CmaCh02G003400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|731387410\|ref\|XP_002271660.2\|	1.8e-62	60.19	PREDICTED: uncharacterized protein LOC100252964 [Vitis vinifera]	[more]
gi\|731387429\|ref\|XP_002271861.2\|	3.4e-61	60.78	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100249577 [Vitis vini...	[more]
gi\|731387422\|ref\|XP_002271994.2\|	2.1e-58	59.61	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100256454 [Vitis vini...	[more]
gi\|731387405\|ref\|XP_010649235.1\|	2.5e-56	57.14	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100246251 [Vitis vini...	[more]
gi\|720049302\|ref\|XP_010271401.1\|	1.2e-55	58.74	PREDICTED: uncharacterized protein LOC104607462 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G003400.1	CmaCh02G003400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 124..201 score: 3.6E-26coord: 13..93 score: 2.2
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..98 score: 9.5
None	No IPR available	PANTHER	PTHR31929:SF13	SUBFAMILY NOT NAMED	coord: 2..98 score: 9.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G003400	Csa2G258770	Cucumber (Chinese Long) v2	cmacuB588
CmaCh02G003400	CSPI02G13010	Wild cucumber (PI 183967)	cmacpiB593
CmaCh02G003400	CSPI07G00610	Wild cucumber (PI 183967)	cmacpiB651
CmaCh02G003400	CmoCh02G003490	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G003400	MELO3C020768.2	Melon (DHL92) v3.6.1	cmamedB617
CmaCh02G003400	Bhi10G001519	Wax gourd	cmawgoB0745

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G003400	CmaCh20G007860	Cucurbita maxima (Rimu)	cmacmaB469

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G003400	Cucurbita moschata (Rifu)	cmacmoB599
CmaCh02G003400	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G003400	Cucumber (Chinese Long) v2	cmacuB644
CmaCh02G003400	Melon (DHL92) v3.5.1	cmameB537
CmaCh02G003400	Melon (DHL92) v3.5.1	cmameB563
CmaCh02G003400	Watermelon (Charleston Gray)	cmawcgB517
CmaCh02G003400	Watermelon (Charleston Gray)	cmawcgB531
CmaCh02G003400	Watermelon (97103) v1	cmawmB586
CmaCh02G003400	Watermelon (97103) v1	cmawmB610
CmaCh02G003400	Cucurbita pepo (Zucchini)	cmacpeB616
CmaCh02G003400	Cucurbita pepo (Zucchini)	cmacpeB626
CmaCh02G003400	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G003400	Bottle gourd (USVL1VR-Ls)	cmalsiB548
CmaCh02G003400	Bottle gourd (USVL1VR-Ls)	cmalsiB565
CmaCh02G003400	Bottle gourd (USVL1VR-Ls)	cmalsiB577
CmaCh02G003400	Cucumber (Gy14) v2	cgybcmaB229
CmaCh02G003400	Cucumber (Gy14) v2	cgybcmaB961
CmaCh02G003400	Melon (DHL92) v3.6.1	cmamedB643
CmaCh02G003400	Melon (DHL92) v3.6.1	cmamedB670
CmaCh02G003400	Silver-seed gourd	carcmaB0442
CmaCh02G003400	Cucumber (Chinese Long) v3	cmacucB0701
CmaCh02G003400	Cucumber (Chinese Long) v3	cmacucB0724
CmaCh02G003400	Cucumber (Chinese Long) v3	cmacucB0769
CmaCh02G003400	Watermelon (97103) v2	cmawmbB608
CmaCh02G003400	Watermelon (97103) v2	cmawmbB613
CmaCh02G003400	Wax gourd	cmawgoB0734
CmaCh02G003400	Wax gourd	cmawgoB0767
CmaCh02G003400	Cucurbita maxima (Rimu)	cmacmaB452
CmaCh02G003400	Cucumber (Gy14) v1	cgycmaB0480
CmaCh02G003400	Cucumber (Gy14) v1	cgycmaB1053