CmoCh02G003450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G003450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SAUR-like auxin-responsive protein family
Location	Cmo_Chr02 : 1747387 .. 1747933 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTGTAAATGAGTTGCATTGTAAAGATACATTTACTGACAGAATTAATGAAAAATAGATCAATTCACCATCAATTTCTATATCGTATTTTCTGGTGATTTGTGATTGCTAATCTGAGGTTTTGGGGAGAGAGAAAACTTGTTACTAAATTATTATATACCAAAAAAGAAACTGAATAACACATTGACCGGCATCAAACATTCTACAAGTTCATACAGATTTCCCCAGAAATCTGTAATATGTTTCAAAGGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATCATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCTTGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA

mRNA sequence

ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTATCAATTCACCATCAATTTCTATATCGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATCATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCTTGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA

Coding sequence (CDS)

ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTATCAATTCACCATCAATTTCTATATCGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATCATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCTTGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA

Homology

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BLAST of CmoCh02G003450 vs. TrEMBL
Match: A0A0A0LIZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258760 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-08
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL H+EEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLNHSEEEFGFHHPQGALTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. TrEMBL
Match: A0A022RC41_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a026564mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VG+ E K+FV P+SYLNHPSFQ LL HAEEEF FHH
Sbjct: 29 VGQNEKKRFVIPLSYLNHPSFQELLSHAEEEFGFHH 64

[Close]

BLAST of CmoCh02G003450 vs. TrEMBL
Match: A0A022RCD2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017226mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VG+ E K+FV P+SYLNHPSFQ LL HAEEEF FHH
Sbjct: 29 VGQNEKKRFVIPLSYLNHPSFQELLSHAEEEFGFHH 64

[Close]

BLAST of CmoCh02G003450 vs. TrEMBL
Match: A0A0A0LPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258770 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-07
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LLK+AEEEF F H Q    I  K  +F+
Sbjct: 38 VGEMQKKRFVVPISYLNHPSFQQLLKYAEEEFGFQHPQGGLTIPCKEDTFI 88

[Close]

BLAST of CmoCh02G003450 vs. TrEMBL
Match: A0A0A0LLF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258700 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-07
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSF 74
          VGE + K+FV PISYLNHPSF+ LL HAEEEF FHH Q    I  K  +F
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFKQLLCHAEEEFGFHHPQGGLTIPCKEDAF 87

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BLAST of CmoCh02G003450 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1


Query: 20 YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          Y+G   E E K+FV PIS+LNHPSF+  L  AEEEF F+H
Sbjct: 43 YVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNH 82

[Close]

BLAST of CmoCh02G003450 vs. TAIR10
Match: AT4G34800.1 (AT4G34800.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1


Query: 20 YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          Y+G   E++ K+FV PISYLNHPSFQ LL  AEEEF F+H
Sbjct: 29 YVGEEMESK-KRFVVPISYLNHPSFQGLLSRAEEEFGFNH 67

[Close]

BLAST of CmoCh02G003450 vs. TAIR10
Match: AT4G34790.1 (AT4G34790.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 50.4 bits (119), Expect = 7.8e-07
Identity = 27/55 (49.09%), Postives = 32/55 (58.18%), Query Frame = 1


Query: 20 YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          Y+G   + E K+FV PISYLNHP F+  L  AEEE  FHH      I  +  SFL
Sbjct: 47 YVGE--QMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFL 99

[Close]

BLAST of CmoCh02G003450 vs. TAIR10
Match: AT5G18020.1 (AT5G18020.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE++ K+++ PISYLN PSFQ LL  +EEEF F H
Sbjct: 33 VGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDH 68

[Close]

BLAST of CmoCh02G003450 vs. TAIR10
Match: AT4G38840.1 (AT4G38840.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VGE   K+FV P+SYL+ PSFQ LL+ AEEEF F H
Sbjct: 42 VGEQNMKRFVVPVSYLDQPSFQDLLRKAEEEFGFDH 77

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: gi|700206761|gb|KGN61880.1| (hypothetical protein Csa_2G258760 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-08
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL H+EEEF FHH Q    I  K  +F+
Sbjct: 38 VGEIQRKRFVVPISYLNHPSFQQLLNHSEEEFGFHHPQGALTIPCKEDAFI 88

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: gi|659115596|ref|XP_008457635.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
          VGE + K+FV PISYLNHPSFQ LL +AEEEF FHH Q    I  K  +FL
Sbjct: 38 VGEIQSKRFVVPISYLNHPSFQQLLSYAEEEFGFHHPQGGLTIPCKEDTFL 88

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: gi|731387405|ref|XP_010649235.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100246251 [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 4.3e-07
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 24  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
           VGETE K+FV PISYLN+PSFQ LL HAEEEF F+H      I  K  SF+
Sbjct: 149 VGETEKKRFVVPISYLNNPSFQKLLSHAEEEFGFNHPMGGVTIPCKEESFI 199

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: gi|297735265|emb|CBI17627.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 4.3e-07
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 24  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL 75
           VGETE K+FV PISYLN+PSFQ LL HAEEEF F+H      I  K  SF+
Sbjct: 92  VGETEKKRFVVPISYLNNPSFQKLLSHAEEEFGFNHPMGGVTIPCKEESFI 142

[Close]

BLAST of CmoCh02G003450 vs. NCBI nr
Match: gi|848873173|ref|XP_012837145.1| (PREDICTED: auxin-induced protein 15A-like [Erythranthe guttata])

HSP 1 Score: 62.4 bits (150), Expect = 5.6e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1


Query: 24 VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH 60
          VG+ E K+FV P+SYLNHPSFQ LL HAEEEF FHH
Sbjct: 29 VGQNEKKRFVIPLSYLNHPSFQELLSHAEEEFGFHH 64

The following BLAST results are available for this feature:

BLAST of CmoCh02G003450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G003450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIZ9_CUCSA	6.1e-08	60.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258760 PE=4 SV=1	[more]
A0A022RC41_ERYGU	3.9e-07	75.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a026564mg PE=4 SV=1	[more]
A0A022RCD2_ERYGU	3.9e-07	75.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017226mg PE=4 SV=1	[more]
A0A0A0LPI5_CUCSA	6.7e-07	60.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258770 PE=4 SV=1	[more]
A0A0A0LLF1_CUCSA	6.7e-07	62.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258700 PE=4 SV=1	[more]

BLAST of CmoCh02G003450 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34810.1	1.2e-07	60.00	SAUR-like auxin-responsive protein family	[more]
AT4G34800.1	1.6e-07	65.00	SAUR-like auxin-responsive protein family	[more]
AT4G34790.1	7.8e-07	49.09	SAUR-like auxin-responsive protein family	[more]
AT5G18020.1	1.3e-06	61.11	SAUR-like auxin-responsive protein family	[more]
AT4G38840.1	1.3e-06	63.89	SAUR-like auxin-responsive protein family	[more]

BLAST of CmoCh02G003450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206761\|gb\|KGN61880.1\|	8.7e-08	60.78	hypothetical protein Csa_2G258760 [Cucumis sativus]	[more]
gi\|659115596\|ref\|XP_008457635.1\|	1.5e-07	62.75	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|731387405\|ref\|XP_010649235.1\|	4.3e-07	62.75	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100246251 [Vitis vini...	[more]
gi\|297735265\|emb\|CBI17627.3\|	4.3e-07	62.75	unnamed protein product [Vitis vinifera]	[more]
gi\|848873173\|ref\|XP_012837145.1\|	5.6e-07	75.00	PREDICTED: auxin-induced protein 15A-like [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G003450.1	CmoCh02G003450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 24..61 score: 8.
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 24..59 score: 5.2
None	No IPR available	PANTHER	PTHR31929:SF13	SUBFAMILY NOT NAMED	coord: 24..59 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G003450	Lsi10G004400	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G003450	MELO3C020761.2	Melon (DHL92) v3.6.1	cmomedB606

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G003450	CmoCh20G007960	Cucurbita moschata (Rifu)	cmocmoB404

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G003450	Silver-seed gourd	carcmoB0436
CmoCh02G003450	Cucumber (Chinese Long) v3	cmocucB0687
CmoCh02G003450	Watermelon (97103) v2	cmowmbB587
CmoCh02G003450	Wax gourd	cmowgoB0736
CmoCh02G003450	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh02G003450	Cucurbita moschata (Rifu)	cmocmoB416
CmoCh02G003450	Cucumber (Gy14) v1	cgycmoB0483
CmoCh02G003450	Cucumber (Gy14) v1	cgycmoB1053
CmoCh02G003450	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G003450	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G003450	Wild cucumber (PI 183967)	cmocpiB582
CmoCh02G003450	Wild cucumber (PI 183967)	cmocpiB644
CmoCh02G003450	Cucumber (Chinese Long) v2	cmocuB577
CmoCh02G003450	Cucumber (Chinese Long) v2	cmocuB633
CmoCh02G003450	Melon (DHL92) v3.5.1	cmomeB527
CmoCh02G003450	Melon (DHL92) v3.5.1	cmomeB552
CmoCh02G003450	Watermelon (Charleston Gray)	cmowcgB515
CmoCh02G003450	Watermelon (Charleston Gray)	cmowcgB530
CmoCh02G003450	Watermelon (97103) v1	cmowmB580
CmoCh02G003450	Watermelon (97103) v1	cmowmB603
CmoCh02G003450	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G003450	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G003450	Cucumber (Gy14) v2	cgybcmoB220
CmoCh02G003450	Cucumber (Gy14) v2	cgybcmoB944