CmoCh01G013920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	VQ motif protein
Location	Cmo_Chr01 : 10972544 .. 10973149 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCATCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTCCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

mRNA sequence

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCATCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTCCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

Coding sequence (CDS)

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCATCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTCCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

Homology

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BLAST of CmoCh01G013920 vs. Swiss-Prot
Match: VQ22_ARATH (VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.5e-17
Identity = 76/182 (41.76%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 30  DDNSGVVSDSTVVTAAISSAT---TLPTSSGLIPDGGRVSKPVRKRTRASRRTPTTLFNT 89
           ++N    + ST  + A+++ T   T    S L P+ GRV+KP R+R+RASRRTPTTL NT
Sbjct: 12  NNNQTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRVTKPTRRRSRASRRTPTTLLNT 71

Query: 90  DAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNAVFDPTVAAYHLDAPPVFQFQNQAP 149
           D +NFRAMVQQ+TGGPS  A  S  +T  F   S++  DP+ A     AP  + FQ  AP
Sbjct: 72  DTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSS--DPS-AGSSQQAPWQYNFQPHAP 131

Query: 150 PPPPPLQQPPFMFSLGNSAASETFFQQGGGLRSNDSNVNYM-----GLFDGSSPTAQNPR 202
             PP   Q P+MFSL N      +        SN +N N M     G  DGS      P 
Sbjct: 132 LQPP---QRPYMFSLNNVNPVVGY--------SNMNNPNTMVSGVFGTVDGSGGGGSAPS 179

[Close]

BLAST of CmoCh01G013920 vs. TrEMBL
Match: A0A0A0L4D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618460 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.1e-50
Identity = 126/201 (62.69%), Postives = 149/201 (74.13%), Query Frame = 1


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLP-TSSG 60
           MA+QW++MY+QNN  N QL F+LS H  +++++NS VVSDSTVVT A+SSA T P +SSG
Sbjct: 1   MANQWLNMYNQNNLSNTQLPFHLSHHDHLSSNNNSDVVSDSTVVTTAVSSANTPPASSSG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS---NNASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPS   NN  NF+TFGF
Sbjct: 61  LNPDGTRVAKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANNNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAP----PVFQFQNQAPPPPPPLQQPPFMFSLGNSAASETFF 180
           P NS  +FDP + AAY +  P     V QFQNQ   PPPPL     MFSL NS   + F+
Sbjct: 121 PCNSQTLFDPASAAAYQVQDPAQQQSVLQFQNQ---PPPPL-----MFSLSNSGGGDAFY 180

Query: 181 QQGGGLRS--NDSNVNYMGLF 189
           QQGGG RS  N++N+NY G F
Sbjct: 181 QQGGGSRSNNNNNNINYTGGF 193

[Close]

BLAST of CmoCh01G013920 vs. TrEMBL
Match: V4M5U0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021568mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 75/161 (46.58%), Postives = 92/161 (57.14%), Query Frame = 1


Query: 3   DQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIPDG 62
           ++W   Y   NN Q  F  S             ++ +TV TA+ S   T  T S L P+ 
Sbjct: 5   NEWSQFY---NNNQTFFTTS------------TITSTTVTTASPSGEAT-STDSRLSPET 64

Query: 63  GRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNA 122
           GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQFTGGPS  A  S  +T GF   +++
Sbjct: 65  GRVTKPARRRSRASRRTPTTLLNTDTSNFRAMVQQFTGGPSAMAFGSGNTTSGFSLTTSS 124

Query: 123 VFDPTVAAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGN 162
             DPT A      P  + FQ  APP PPP  Q  +MFSL N
Sbjct: 125 --DPT-AGSSQQTPWQYNFQPHAPPQPPP--QRAYMFSLSN 144

[Close]

BLAST of CmoCh01G013920 vs. TrEMBL
Match: A0A067LFD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-17
Identity = 84/193 (43.52%), Postives = 108/193 (55.96%), Query Frame = 1


Query: 24  HRQVNNDDNSGVVSDSTVVTAAISSATT------------LPTSSGLIPDGGRVSKPVRK 83
           + Q N+   S  VSD+TVVT  I+S+T+             PT++ L P+G RV+KPVR+
Sbjct: 12  NHQHNHTMFSDGVSDATVVTTTITSSTSPTLLGSGSSGSGSPTAAHLSPEG-RVAKPVRR 71

Query: 84  RTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASN------FSTFGFPSNSNAV-FDP 143
           R+RASRRTPTTL NTD  NFRAMVQQFTGGPS   S+       S+F F  N   V  +P
Sbjct: 72  RSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFSSSGSHLTTSSFNFGMNPRQVHVNP 131

Query: 144 TV--AAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGNSAA--SETFFQQGGGLRSNDS 193
            V  A YH       Q+Q Q         QP ++FSLGN++    + FFQ+ G  R    
Sbjct: 132 MVPAAGYH-----NLQYQQQ--------NQPSYLFSLGNNSPGNGDLFFQRLGNPRPTGM 190

[Close]

BLAST of CmoCh01G013920 vs. TrEMBL
Match: A0A078HGA8_BRANA (BnaC05g30450D protein OS=Brassica napus GN=BnaC05g30450D PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 73/163 (44.79%), Postives = 91/163 (55.83%), Query Frame = 1


Query: 2   ADQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDS-TVVTAAISSATTLPTSSGLIP 61
           ++ W H+Y  +NNQ                 S + S + T  TAA  S       S L P
Sbjct: 4   SNDWSHLY--SNNQAFY------------TTSTITSTAVTTTTAASPSGEATSMDSRLSP 63

Query: 62  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNS 121
           + GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQFTGGPS  A  S  +T GF   S
Sbjct: 64  ETGRVTKPARRRSRASRRTPTTLLNTDTSNFRAMVQQFTGGPSAMAFGSGNTTSGFSLTS 123

Query: 122 NAVFDPTVAAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGN 162
           ++  DP+ A      P  + +Q  APPPP    Q P+MFSL N
Sbjct: 124 SS--DPS-AGSSQQVPWQYSYQPHAPPPP----QQPYMFSLNN 145

[Close]

BLAST of CmoCh01G013920 vs. TrEMBL
Match: A0A0A0KV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-16
Identity = 73/156 (46.79%), Postives = 89/156 (57.05%), Query Frame = 1


Query: 1   MADQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIP 60
           M+  W+  YHQN +   +   SDH   +       VSD+T V    +S  TL  S+GL P
Sbjct: 1   MSGDWLQFYHQNLSSTAAPPPSDH-STSEMFFVDRVSDATGVITTTASVNTLG-STGLNP 60

Query: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGP-----SNNASNFST-FG- 120
           +G RV KPVR+R+RASRRTPTTL NTD  NFRAMVQQFTGGP     S+ + NFS  FG 
Sbjct: 61  EG-RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGG 120

Query: 121 -----FPSNSNAVFDPTVAAYHLDAPPVFQFQNQAP 145
                FP++ NA   P  + Y L  PP  Q  N  P
Sbjct: 121 IHQSNFPTSQNATISPPPSGYLLQQPP--QLYNHNP 151

[Close]

BLAST of CmoCh01G013920 vs. TAIR10
Match: AT3G22160.1 (AT3G22160.1 VQ motif-containing protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.7e-18
Identity = 76/182 (41.76%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 30  DDNSGVVSDSTVVTAAISSAT---TLPTSSGLIPDGGRVSKPVRKRTRASRRTPTTLFNT 89
           ++N    + ST  + A+++ T   T    S L P+ GRV+KP R+R+RASRRTPTTL NT
Sbjct: 12  NNNQTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRVTKPTRRRSRASRRTPTTLLNT 71

Query: 90  DAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNAVFDPTVAAYHLDAPPVFQFQNQAP 149
           D +NFRAMVQQ+TGGPS  A  S  +T  F   S++  DP+ A     AP  + FQ  AP
Sbjct: 72  DTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSS--DPS-AGSSQQAPWQYNFQPHAP 131

Query: 150 PPPPPLQQPPFMFSLGNSAASETFFQQGGGLRSNDSNVNYM-----GLFDGSSPTAQNPR 202
             PP   Q P+MFSL N      +        SN +N N M     G  DGS      P 
Sbjct: 132 LQPP---QRPYMFSLNNVNPVVGY--------SNMNNPNTMVSGVFGTVDGSGGGGSAPS 179

[Close]

BLAST of CmoCh01G013920 vs. TAIR10
Match: AT4G15120.1 (AT4G15120.1 VQ motif-containing protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-17
Identity = 68/147 (46.26%), Postives = 85/147 (57.82%), Query Frame = 1


Query: 28  NNDDNSGVVSDSTVVTAAISSATTLPTS-----SGLIPDGGRVSKPVRKRTRASRRTPTT 87
           +N+D S   ++ T  T A S+ TT  T+     S L PD  RV+KP R+R+RASRRTPTT
Sbjct: 4   SNNDWSQFYNNQTFFTTATSTVTTTTTTATSADSPLSPDNRRVAKPTRRRSRASRRTPTT 63

Query: 88  LFNTDAANFRAMVQQFTGGPSNNASNFS-TFGFPSNSNAVFDPTVAAYHLDAPPVFQFQN 147
           LFNTD ANFRAMVQQFTGGPS  A   S + GF   S+   DPT A            QN
Sbjct: 64  LFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSLTSS---DPT-AGVSSSPWQYANLQN 123

Query: 148 QAPPPPPPLQQPPFMFSLGNSAASETF 169
           Q        QQ P+MFS  N+ ++ ++
Sbjct: 124 QMAHNELMQQQRPYMFSSSNNVSTLSY 146

[Close]

BLAST of CmoCh01G013920 vs. TAIR10
Match: AT1G35830.1 (AT1G35830.1 VQ motif-containing protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-07
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 66  SKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGP--------SNNASNFSTFGFPSN 118
           S+  RKRTRASRR PTT+  TD +NFRAMVQ+FTG P        S+    F  F  PS+
Sbjct: 96  SRNPRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSD 155

[Close]

BLAST of CmoCh01G013920 vs. TAIR10
Match: AT4G39720.1 (AT4G39720.1 VQ motif-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1


Query: 6   IHMYHQNNNQQLS---FNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIPDG 65
           +H  H NNN  +    FN +    VN   +   +S   + T++ +S+     + G+I   
Sbjct: 57  LHFDHNNNNSLIPPNYFNNNTFLPVNQQPDP--ISQLDLRTSSATSSLPPTNNIGVI--- 116

Query: 66  GRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS----NNASNFST 112
               K  +KR+RASRR PTT+  TD +NFRAMVQ+FTG P+    NN S  +T
Sbjct: 117 ----KKTKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNSIVNT 160

[Close]

BLAST of CmoCh01G013920 vs. NCBI nr
Match: gi|659129448|ref|XP_008464691.1| (PREDICTED: GATA zinc finger domain-containing protein 11-like [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-51
Identity = 130/205 (63.41%), Postives = 152/205 (74.15%), Query Frame = 1


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLP-TSSG 60
           MA+QW++MY+QNN  N QL F+LSDH  +++++NS VVSDSTVVT A+SSATT P +SSG
Sbjct: 1   MANQWLNMYNQNNLPNTQLPFHLSDHDHLSSNNNSDVVSDSTVVTTAVSSATTPPASSSG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSN---NASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPSN   N  NF+TFGF
Sbjct: 61  LNPDGTRVTKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANSNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAPP------VFQFQNQAPPPPPPLQQPPFMFSLGNSAASET 180
           P NS  ++DP + AAY +  PP      VFQFQNQ    PPPL     MFSL NS   + 
Sbjct: 121 PCNSQTLYDPASAAAYQVQDPPQQQQQSVFQFQNQ----PPPL-----MFSLSNSGGGDA 180

Query: 181 FFQQGGGLRS----NDSNVNYMGLF 189
           FFQQGGG RS    N++N NYMG F
Sbjct: 181 FFQQGGGSRSNNNNNNNNRNYMGGF 196

[Close]

BLAST of CmoCh01G013920 vs. NCBI nr
Match: gi|778695480|ref|XP_011654003.1| (PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-49
Identity = 126/201 (62.69%), Postives = 149/201 (74.13%), Query Frame = 1


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLP-TSSG 60
           MA+QW++MY+QNN  N QL F+LS H  +++++NS VVSDSTVVT A+SSA T P +SSG
Sbjct: 1   MANQWLNMYNQNNLSNTQLPFHLSHHDHLSSNNNSDVVSDSTVVTTAVSSANTPPASSSG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS---NNASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPS   NN  NF+TFGF
Sbjct: 61  LNPDGTRVAKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANNNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAP----PVFQFQNQAPPPPPPLQQPPFMFSLGNSAASETFF 180
           P NS  +FDP + AAY +  P     V QFQNQ   PPPPL     MFSL NS   + F+
Sbjct: 121 PCNSQTLFDPASAAAYQVQDPAQQQSVLQFQNQ---PPPPL-----MFSLSNSGGGDAFY 180

Query: 181 QQGGGLRS--NDSNVNYMGLF 189
           QQGGG RS  N++N+NY G F
Sbjct: 181 QQGGGSRSNNNNNNINYTGGF 193

[Close]

BLAST of CmoCh01G013920 vs. NCBI nr
Match: gi|567196149|ref|XP_006406205.1| (hypothetical protein EUTSA_v10021568mg [Eutrema salsugineum])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 75/161 (46.58%), Postives = 92/161 (57.14%), Query Frame = 1


Query: 3   DQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIPDG 62
           ++W   Y   NN Q  F  S             ++ +TV TA+ S   T  T S L P+ 
Sbjct: 5   NEWSQFY---NNNQTFFTTS------------TITSTTVTTASPSGEAT-STDSRLSPET 64

Query: 63  GRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNA 122
           GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQFTGGPS  A  S  +T GF   +++
Sbjct: 65  GRVTKPARRRSRASRRTPTTLLNTDTSNFRAMVQQFTGGPSAMAFGSGNTTSGFSLTTSS 124

Query: 123 VFDPTVAAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGN 162
             DPT A      P  + FQ  APP PPP  Q  +MFSL N
Sbjct: 125 --DPT-AGSSQQTPWQYNFQPHAPPQPPP--QRAYMFSLSN 144

[Close]

BLAST of CmoCh01G013920 vs. NCBI nr
Match: gi|643736478|gb|KDP42784.1| (hypothetical protein JCGZ_00483 [Jatropha curcas])

HSP 1 Score: 96.3 bits (238), Expect = 6.6e-17
Identity = 84/193 (43.52%), Postives = 108/193 (55.96%), Query Frame = 1


Query: 24  HRQVNNDDNSGVVSDSTVVTAAISSATT------------LPTSSGLIPDGGRVSKPVRK 83
           + Q N+   S  VSD+TVVT  I+S+T+             PT++ L P+G RV+KPVR+
Sbjct: 12  NHQHNHTMFSDGVSDATVVTTTITSSTSPTLLGSGSSGSGSPTAAHLSPEG-RVAKPVRR 71

Query: 84  RTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASN------FSTFGFPSNSNAV-FDP 143
           R+RASRRTPTTL NTD  NFRAMVQQFTGGPS   S+       S+F F  N   V  +P
Sbjct: 72  RSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFSSSGSHLTTSSFNFGMNPRQVHVNP 131

Query: 144 TV--AAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGNSAA--SETFFQQGGGLRSNDS 193
            V  A YH       Q+Q Q         QP ++FSLGN++    + FFQ+ G  R    
Sbjct: 132 MVPAAGYH-----NLQYQQQ--------NQPSYLFSLGNNSPGNGDLFFQRLGNPRPTGM 190

[Close]

BLAST of CmoCh01G013920 vs. NCBI nr
Match: gi|802562542|ref|XP_012066426.1| (PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas])

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16
Identity = 86/206 (41.75%), Postives = 112/206 (54.37%), Query Frame = 1


Query: 11  QNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATT------------LPTSSGL 70
           QN +    +    + Q N+   S  VSD+TVVT  I+S+T+             PT++ L
Sbjct: 3   QNMSNPSDWGQFYNHQHNHTMFSDGVSDATVVTTTITSSTSPTLLGSGSSGSGSPTAAHL 62

Query: 71  IPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASN------FSTF 130
            P+G RV+KPVR+R+RASRRTPTTL NTD  NFRAMVQQFTGGPS   S+       S+F
Sbjct: 63  SPEG-RVAKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFSSSGSHLTTSSF 122

Query: 131 GFPSNSNAV-FDPTV--AAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGNSAA--SET 190
            F  N   V  +P V  A YH       Q+Q Q         QP ++FSLGN++    + 
Sbjct: 123 NFGMNPRQVHVNPMVPAAGYH-----NLQYQQQ--------NQPSYLFSLGNNSPGNGDL 182

Query: 191 FFQQGGGLRSNDSNVNYMGL-FDGSS 193
           FFQ+ G  R    +V+  GL  DG S
Sbjct: 183 FFQRLGNPRPTGMDVSSDGLVMDGVS 194

The following BLAST results are available for this feature:

BLAST of CmoCh01G013920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ22_ARATH	6.5e-17	41.76	VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1	[more]

BLAST of CmoCh01G013920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D1_CUCSA	9.1e-50	62.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618460 PE=4 SV=1	[more]
V4M5U0_EUTSA	1.6e-17	46.58	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021568mg PE=4 SV=1	[more]
A0A067LFD1_JATCU	4.6e-17	43.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1	[more]
A0A078HGA8_BRANA	3.0e-16	44.79	BnaC05g30450D protein OS=Brassica napus GN=BnaC05g30450D PE=4 SV=1	[more]
A0A0A0KV74_CUCSA	3.9e-16	46.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1	[more]

BLAST of CmoCh01G013920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22160.1	3.7e-18	41.76	VQ motif-containing protein	[more]
AT4G15120.1	2.4e-17	46.26	VQ motif-containing protein	[more]
AT1G35830.1	2.9e-07	51.67	VQ motif-containing protein	[more]
AT4G39720.1	3.2e-06	37.17	VQ motif-containing protein	[more]

BLAST of CmoCh01G013920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129448\|ref\|XP_008464691.1\|	1.8e-51	63.41	PREDICTED: GATA zinc finger domain-containing protein 11-like [Cucumis melo]	[more]
gi\|778695480\|ref\|XP_011654003.1\|	1.3e-49	62.69	PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus]	[more]
gi\|567196149\|ref\|XP_006406205.1\|	2.3e-17	46.58	hypothetical protein EUTSA_v10021568mg [Eutrema salsugineum]	[more]
gi\|643736478\|gb\|KDP42784.1\|	6.6e-17	43.52	hypothetical protein JCGZ_00483 [Jatropha curcas]	[more]
gi\|802562542\|ref\|XP_012066426.1\|	3.3e-16	41.75	PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G013920.1	CmoCh01G013920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 78..104 score: 9.4
None	No IPR available	PANTHER	PTHR33179	FAMILY NOT NAMED	coord: 4..171 score: 6.7
None	No IPR available	PANTHER	PTHR33179:SF7	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23	coord: 4..171 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G013920	Cucsa.058430	Cucumber (Gy14) v1	cgycmoB0074
CmoCh01G013920	CmaCh01G013350	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G013920	Cla023266	Watermelon (97103) v1	cmowmB453
CmoCh01G013920	Csa4G618460	Cucumber (Chinese Long) v2	cmocuB455
CmoCh01G013920	MELO3C026380	Melon (DHL92) v3.5.1	cmomeB439
CmoCh01G013920	ClCG11G016820	Watermelon (Charleston Gray)	cmowcgB387
CmoCh01G013920	CSPI04G07050	Wild cucumber (PI 183967)	cmocpiB473
CmoCh01G013920	CSPI04G22010	Wild cucumber (PI 183967)	cmocpiB459
CmoCh01G013920	Lsi04G019250	Bottle gourd (USVL1VR-Ls)	cmolsiB415
CmoCh01G013920	Cp4.1LG02g02700	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G013920	Cp4.1LG06g05610	Cucurbita pepo (Zucchini)	cmocpeB469
CmoCh01G013920	MELO3C026380.2	Melon (DHL92) v3.6.1	cmomedB503
CmoCh01G013920	CsaV3_4G007280	Cucumber (Chinese Long) v3	cmocucB0560
CmoCh01G013920	CsaV3_4G032360	Cucumber (Chinese Long) v3	cmocucB0543
CmoCh01G013920	Cla97C11G222760	Watermelon (97103) v2	cmowmbB430
CmoCh01G013920	CsGy4G020530	Cucumber (Gy14) v2	cgybcmoB477
CmoCh01G013920	Carg24702	Silver-seed gourd	carcmoB0881

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G013920	CmoCh09G007000	Cucurbita moschata (Rifu)	cmocmoB022

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G013920	Silver-seed gourd	carcmoB1400
CmoCh01G013920	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh01G013920	Cucurbita maxima (Rimu)	cmacmoB051
CmoCh01G013920	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G013920	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G013920	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G013920	Melon (DHL92) v3.6.1	cmomedB487