Carg24702 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24702
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	VQ motif-containing protein 22-like
Location	Cucurbita_argyrosperma_scaffold_270 : 30105 .. 30707 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCGTCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTTCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

mRNA sequence

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCGTCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTTCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

Coding sequence (CDS)

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCGTCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTTCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

Protein sequence

MADQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAVSSATTLPTSSGLIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSNSNAVFDPTVAAYHLDAPPVFQFQNQAPPPPPLQQPPFMFSLGNSAASETFFQQGGGLRSNDSNVNYMGLFDGSSPTAQNPRSE

Homology

[Close]

BLAST of Carg24702 vs. NCBI nr
Match: XP_022940097.1 (VQ motif-containing protein 22-like [Cucurbita moschata])

HSP 1 Score: 270.0 bits (689), Expect = 6.4e-69
Identity = 194/201 (96.52%), Postives = 194/201 (96.52%), Query Frame = 0


Query: 1   MADQWIHMYHQNNNQQLSFNLSDHRQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSGLIP 60
           MADQWIHMYHQNNNQQLSFNLSDHRQVN  XXXXXXXXXXXXXXXXX    LPTSSGLIP
Sbjct: 1   MADQWIHMYHQNNNQQLSFNLSDHRQVNNDXXXXXXXXXXXXXXXXXSATTLPTSSGLIP 60

Query: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSNSNA 120
           DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSNSNA
Sbjct: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSNSNA 120

Query: 121 VFDPTVAAYHLDAPPVFQFQNQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSNDS 180
           VFDPTVAAYHLDAPPVFQFQNQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSNDS
Sbjct: 121 VFDPTVAAYHLDAPPVFQFQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSNDS 180

Query: 181 NVNYMGLFDGSSPTAQNPRSE 201
           NVNYMGLFDGSSPTAQNPRSE
Sbjct: 181 NVNYMGLFDGSSPTAQNPRSE 201

[Close]

BLAST of Carg24702 vs. NCBI nr
Match: XP_023525782.1 (VQ motif-containing protein 22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68
Identity = 166/200 (83.00%), Postives = 168/200 (84.00%), Query Frame = 0


Query: 1   MADQWIHMYHQNNNQQLSFNLSDHRQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSGLIP 60
           MADQWI MYHQNNNQQLSFNLSDHRQ+NXXXXXXXXXXXXXXXXXXXXXXXLPTSSGLIP
Sbjct: 1   MADQWIRMYHQNNNQQLSFNLSDHRQLNXXXXXXXXXXXXXXXXXXXXXXXLPTSSGLIP 60

Query: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSNSNA 120
           DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSNSNA
Sbjct: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSNSNA 120

Query: 121 VFDPTVAAYHLDAPPVFQFQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSNDSN 180
           VFDPTVAAYHL+APPVFQFQNQ                               LRSNDSN
Sbjct: 121 VFDPTVAAYHLEAPPVFQFQNQPPPHAPLQQPPFMFSLGNSAASETFFQQGGGLRSNDSN 180

Query: 181 VNYMGLFDGSSPTAQNPRSE 201
           VNYMGLFDGSSPTAQNPRSE
Sbjct: 181 VNYMGLFDGSSPTAQNPRSE 200

[Close]

BLAST of Carg24702 vs. NCBI nr
Match: XP_022981901.1 (VQ motif-containing protein 22-like [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 2.9e-61
Identity = 158/203 (77.83%), Postives = 162/203 (79.80%), Query Frame = 0


Query: 1   MADQWIHMYHQ---NNNQQLSFNLSDHRQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSG 60
           MADQWIHMYHQ   +NNQQLSFNLSDH    XXXXXXXXXXXXXXXXXXXXXXX PTSSG
Sbjct: 1   MADQWIHMYHQDNLSNNQQLSFNLSDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTSSG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFPSN 120
           LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGF SN
Sbjct: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASNFSTFGFSSN 120

Query: 121 SNAVFDPTVAAYHLDAPPVFQFQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSN 180
           SNAVFDP+VAAY+L+APPVFQFQNQ                               LRSN
Sbjct: 121 SNAVFDPSVAAYNLNAPPVFQFQNQAPPPAPLQQQPFMFSLGNSAASETFFQQGGGLRSN 180

Query: 181 DSNVNYMGLFDGSSPTAQNPRSE 201
           DSNVNY GLFDGSSPTAQNPRSE
Sbjct: 181 DSNVNYTGLFDGSSPTAQNPRSE 203

[Close]

BLAST of Carg24702 vs. NCBI nr
Match: XP_022139424.1 (VQ motif-containing protein 22-like [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 8.5e-29
Identity = 97/207 (46.86%), Postives = 117/207 (56.52%), Query Frame = 0


Query: 1   MADQWIHMYHQNNNQQLSFNLSDHRQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSG--L 60
           MADQW+++YHQN + Q    LSDH   N                        P  SG  L
Sbjct: 1   MADQWLNIYHQNLSNQPPL-LSDHEIRN-----SGLVSDSTVVTAAVSSATTPPGSGPSL 60

Query: 61  IPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGP-SNNASNFSTFGFPSN 120
            PD GRV KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGP SNNASNF TFGFP +
Sbjct: 61  SPD-GRVGKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPTSNNASNF-TFGFPGS 120

Query: 121 SNAVFDP-TVAAYHLDAPP----VFQFQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           +++V+DP + AAYH+ APP    +FQ+Q Q                              
Sbjct: 121 THSVYDPSSAAAYHIPAPPQQAQLFQYQGQQPPPFMFSLGDSPALFQTHGGGP------- 180

Query: 181 XLRSNDSNV-NYMGLFDGSSPTAQNPR 199
             R++++NV +YMGLFDG +P    PR
Sbjct: 181 --RNDNNNVADYMGLFDGPAPPPHQPR 190

[Close]

BLAST of Carg24702 vs. NCBI nr
Match: XP_011654003.1 (PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus] >KGN54981.1 hypothetical protein Csa_4G618460 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-25
Identity = 99/141 (70.21%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDH-RQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSG 60
           MA+QW++MY+QNN  N QL F+LS H     XXXXXXXXXXXXXXXXXXXXXXX     G
Sbjct: 1   MANQWLNMYNQNNLSNTQLPFHLSHHDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS---NNASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPS   NN  NF+TFGF
Sbjct: 61  LNPDGTRVAKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANNNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAP 135
           P NS  +FDP + AAY +  P
Sbjct: 121 PCNSQTLFDPASAAAYQVQDP 141

[Close]

BLAST of Carg24702 vs. TAIR10
Match: AT3G22160.1 (VQ motif-containing protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-14
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 56  SGLIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFG 115
           S L P+ GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQ+TGGPS  A  S  +T  
Sbjct: 41  SRLSPETGRVTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSA 100

Query: 116 FPSNSNAVFDPTVAAYHLDAPPVFQFQ 141
           F   S++  DP+ A     AP  + FQ
Sbjct: 101 FSLTSSS--DPS-AGSSQQAPWQYNFQ 124

[Close]

BLAST of Carg24702 vs. TAIR10
Match: AT4G15120.1 (VQ motif-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-07
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 79  TPTTLFNTDAANFRAMVQQFTGGPSNNASNFS-TFGFPSNSNAVFDPT 126
           TPTTLFNTD ANFRAMVQQFTGGPS  A   S + GF   S+   DPT
Sbjct: 60  TPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSLTSS---DPT 104

[Close]

BLAST of Carg24702 vs. TAIR10
Match: AT4G39720.1 (VQ motif-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-07
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 65  VSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS----NNASNFST 112
           V K  +KR+RASRR PTT+  TD +NFRAMVQ+FTG P+    NN S  +T
Sbjct: 110 VIKKTKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNSIVNT 160

[Close]

BLAST of Carg24702 vs. TAIR10
Match: AT5G65170.1 (VQ motif-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-07
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSN---------NASNFST 120
           +G   ++  +KR+R SRR PTT+  TD +NFRAMVQ+FTG PS            S F  
Sbjct: 131 NGLATTRNPKKRSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPFTGLSSSFPRSRFDL 190

[Close]

BLAST of Carg24702 vs. TAIR10
Match: AT4G20000.1 (VQ motif-containing protein)

HSP 1 Score: 43.1 bits (100), Expect = 2.3e-04
Identity = 37/111 (33.33%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 3   DQWIHMYHQNNNQQLS--FNLSDHRQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSG-LI 62
           DQW+  Y Q N Q+++  FN  +                            + +SSG  +
Sbjct: 7   DQWLQHYEQQNIQEITPCFNAIN----------------------------IASSSGSSL 66

Query: 63  PDGGRVS-KPVRKRTRASRRT-PTTLFNTDAANFRAMVQQFTGGPSNNASN 109
            DGG  + +   +R+RASRR  PTTL N + +NFRA+VQ+FTG  +   SN
Sbjct: 67  GDGGAAAHEAAGRRSRASRRAIPTTLLNANPSNFRALVQKFTGRSAGGESN 89

[Close]

BLAST of Carg24702 vs. Swiss-Prot
Match: sp|Q9LIE6|VQ22_ARATH (VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-13
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 56  SGLIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFG 115
           S L P+ GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQ+TGGPS  A  S  +T  
Sbjct: 41  SRLSPETGRVTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSA 100

Query: 116 FPSNSNAVFDPTVAAYHLDAPPVFQFQ 141
           F   S++  DP+ A     AP  + FQ
Sbjct: 101 FSLTSSS--DPS-AGSSQQAPWQYNFQ 124

[Close]

BLAST of Carg24702 vs. TrEMBL
Match: tr|A0A0A0L4D1|A0A0A0L4D1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G618460 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25
Identity = 99/141 (70.21%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDH-RQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSG 60
           MA+QW++MY+QNN  N QL F+LS H     XXXXXXXXXXXXXXXXXXXXXXX     G
Sbjct: 1   MANQWLNMYNQNNLSNTQLPFHLSHHDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS---NNASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPS   NN  NF+TFGF
Sbjct: 61  LNPDGTRVAKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANNNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAP 135
           P NS  +FDP + AAY +  P
Sbjct: 121 PCNSQTLFDPASAAAYQVQDP 141

[Close]

BLAST of Carg24702 vs. TrEMBL
Match: tr|A0A1S3CM56|A0A1S3CM56_CUCME (VQ motif-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103502514 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 96/133 (72.18%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDHRQVN-XXXXXXXXXXXXXXXXXXXXXXXLPTSSG 60
           MA+QW++MY+QNN  N QL F+LSDH  ++ XXXXXXXXXXXXXXXXXXXXXXX     G
Sbjct: 1   MANQWLNMYNQNNLPNTQLPFHLSDHDHLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSN---NASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPSN   N  NF+TFGF
Sbjct: 61  LNPDGTRVTKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANSNLHNFATFGF 120

Query: 121 PSNSNAVFDPTVA 128
           P NS  ++DP  A
Sbjct: 121 PCNSQTLYDPASA 133

[Close]

BLAST of Carg24702 vs. TrEMBL
Match: tr|A0A0A0KV74|A0A0A0KV74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056730 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.1e-14
Identity = 62/147 (42.18%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 1   MADQWIHMYHQNNNQQLSFNLSDHRQVNXXXXXXXXXXXXXXXXXXXXXXXLPTSSGLIP 60
           M+  W+  YHQN +   +   SDH                              S+GL P
Sbjct: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTL--GSTGLNP 60

Query: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGP-----SNNASNFST-FG- 120
           + GRV KPVR+R+RASRRTPTTL NTD  NFRAMVQQFTGGP     S+ + NFS  FG 
Sbjct: 61  E-GRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGG 120

Query: 121 -----FPSNSNAVFDPTVAAYHLDAPP 136
                FP++ NA   P  + Y L  PP
Sbjct: 121 IHQSNFPTSQNATISPPPSGYLLQQPP 144

[Close]

BLAST of Carg24702 vs. TrEMBL
Match: tr|A0A199UB48|A0A199UB48_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S050000 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 56/104 (53.85%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 53  PTSS--GLIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS-----NN 112
           P+SS  G +   GRVSKPVR+R+RASRRTPTTL NTD  NFRAMVQQFTGGPS      +
Sbjct: 55  PSSSAGGHLSPEGRVSKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFAAGS 114

Query: 113 ASNFSTFGFPSNS-------NAVFDPTVAAYHLDAPPVFQFQNQ 143
             N  +FGF  NS       +AV  P  A+YH    P +Q Q Q
Sbjct: 115 QLNSPSFGFSLNSRQAHVNPSAVMVPGGASYH----PQYQQQRQ 154

[Close]

BLAST of Carg24702 vs. TrEMBL
Match: tr|A0A1S3BTN7|A0A1S3BTN7_CUCME (VQ motif-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103493042 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.6e-13
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 55  SSGLIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGP-----SNNASNF 114
           S+GL P+ GRV KPVR+R+RASRRTPTTL NTD  NFRAMVQQFTGGP     S+ + NF
Sbjct: 47  STGLNPE-GRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNF 106

Query: 115 ST-FG------FPSNSNAVFDPTVAAYHLDAPP 136
           S  FG      F ++ NA   P  + Y L  PP
Sbjct: 107 SLGFGGIRQSNFSTSQNAAISPPPSGYLLQQPP 138

The following BLAST results are available for this feature:

BLAST of Carg24702 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940097.1	6.4e-69	96.52	VQ motif-containing protein 22-like [Cucurbita moschata]	[more]
XP_023525782.1	1.4e-68	83.00	VQ motif-containing protein 22-like [Cucurbita pepo subsp. pepo]	[more]
XP_022981901.1	2.9e-61	77.83	VQ motif-containing protein 22-like [Cucurbita maxima]	[more]
XP_022139424.1	8.5e-29	46.86	VQ motif-containing protein 22-like [Momordica charantia]	[more]
XP_011654003.1	3.3e-25	70.21	PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus] >KGN54981.1 hyp...	[more]

BLAST of Carg24702 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22160.1	2.5e-14	55.17	VQ motif-containing protein	[more]
AT4G15120.1	6.5e-07	66.67	VQ motif-containing protein	[more]
AT4G39720.1	6.5e-07	56.86	VQ motif-containing protein	[more]
AT5G65170.1	6.5e-07	43.48	VQ motif-containing protein	[more]
AT4G20000.1	2.3e-04	33.33	VQ motif-containing protein	[more]

BLAST of Carg24702 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LIE6\|VQ22_ARATH	4.4e-13	55.17	VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1	[more]

BLAST of Carg24702 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4D1\|A0A0A0L4D1_CUCSA	2.2e-25	70.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G618460 PE=4 SV=1	[more]
tr\|A0A1S3CM56\|A0A1S3CM56_CUCME	2.9e-25	72.18	VQ motif-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103502514 PE=4...	[more]
tr\|A0A0A0KV74\|A0A0A0KV74_CUCSA	5.1e-14	42.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056730 PE=4 SV=1	[more]
tr\|A0A199UB48\|A0A199UB48_MANES	3.3e-13	53.85	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S050000 PE=4 SV=1	[more]
tr\|A0A1S3BTN7\|A0A1S3BTN7_CUCME	5.6e-13	55.91	VQ motif-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103493042 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24702-RA	Carg24702-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 78..104 e-value: 4.9E-11 score: 41.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..77
None	No IPR available	PANTHER	PTHR33179:SF7	VQ MOTIF-CONTAINING PROTEIN 22	coord: 36..173
None	No IPR available	PANTHER	PTHR33179	FAMILY NOT NAMED	coord: 36..173

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24702	Cla023266	Watermelon (97103) v1	carwmB0638
Carg24702	Csa4G618460	Cucumber (Chinese Long) v2	carcuB0660
Carg24702	ClCG11G016820	Watermelon (Charleston Gray)	carwcgB0621
Carg24702	CSPI04G22010	Wild cucumber (PI 183967)	carcpiB0669
Carg24702	Cucsa.058430	Cucumber (Gy14) v1	carcgyB0713
Carg24702	CmaCh01G013350	Cucurbita maxima (Rimu)	carcmaB0904
Carg24702	CmoCh01G013920	Cucurbita moschata (Rifu)	carcmoB0881
Carg24702	CmoCh09G007000	Cucurbita moschata (Rifu)	carcmoB0880
Carg24702	Lsi04G019250	Bottle gourd (USVL1VR-Ls)	carlsiB582
Carg24702	Cp4.1LG06g05610	Cucurbita pepo (Zucchini)	carcpeB0910
Carg24702	Cp4.1LG02g02700	Cucurbita pepo (Zucchini)	carcpeB0909
Carg24702	CsGy4G020530	Cucumber (Gy14) v2	carcgybB0636
Carg24702	CsaV3_4G032360	Cucumber (Chinese Long) v3	carcucB0671
Carg24702	Cla97C11G222760	Watermelon (97103) v2	carwmbB0668

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24702	Watermelon (Charleston Gray)	carwcgB0620
Carg24702	Watermelon (97103) v1	carwmB0637
Carg24702	Watermelon (97103) v2	carwmbB0667