CmoCh01G013920.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013920.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	VQ motif protein
Location	Cmo_Chr01 : 10972544 .. 10973149 (+)
Sequence length	606

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCATCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTCCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

mRNA sequence

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCATCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTCCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

Coding sequence (CDS)

ATGGCTGATCAATGGATTCACATGTATCACCAAAACAACAATCAACAACTCTCCTTCAACCTTTCCGACCACCGTCAGGTCAATAACGACGACAATTCCGGGGTTGTTTCTGATTCCACCGTCGTCACCGCCGCCATCTCCTCTGCCACAACGCTACCGACCTCCTCCGGTTTAATCCCAGATGGGGGCAGAGTCTCGAAGCCGGTTCGCAAGCGGACCAGAGCCTCTCGACGGACTCCAACCACTTTATTCAACACGGACGCGGCCAATTTCCGAGCCATGGTCCAGCAGTTCACCGGTGGTCCATCCAACAACGCTTCCAATTTTTCCACATTTGGCTTCCCTAGTAACTCCAACGCCGTTTTCGACCCCACCGTCGCCGCCTACCACCTCGACGCTCCGCCGGTATTCCAATTCCAAAACCAAGCTCCACCGCCCCCGCCGCCGCTGCAGCAACCGCCGTTTATGTTCTCGTTGGGGAATTCAGCGGCGAGTGAAACGTTTTTTCAACAGGGTGGGGGGTTGAGGAGTAATGATAGCAATGTTAATTACATGGGGCTGTTTGATGGGTCTTCGCCGACGGCTCAGAATCCTCGATCGGAGTGA

Homology

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BLAST of CmoCh01G013920.1 vs. Swiss-Prot
Match: VQ22_ARATH (VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.5e-17
Identity = 76/182 (41.76%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 30  DDNSGVVSDSTVVTAAISSAT---TLPTSSGLIPDGGRVSKPVRKRTRASRRTPTTLFNT 89
           ++N    + ST  + A+++ T   T    S L P+ GRV+KP R+R+RASRRTPTTL NT
Sbjct: 12  NNNQTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRVTKPTRRRSRASRRTPTTLLNT 71

Query: 90  DAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNAVFDPTVAAYHLDAPPVFQFQNQAP 149
           D +NFRAMVQQ+TGGPS  A  S  +T  F   S++  DP+ A     AP  + FQ  AP
Sbjct: 72  DTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSS--DPS-AGSSQQAPWQYNFQPHAP 131

Query: 150 PPPPPLQQPPFMFSLGNSAASETFFQQGGGLRSNDSNVNYM-----GLFDGSSPTAQNPR 202
             PP   Q P+MFSL N      +        SN +N N M     G  DGS      P 
Sbjct: 132 LQPP---QRPYMFSLNNVNPVVGY--------SNMNNPNTMVSGVFGTVDGSGGGGSAPS 179

[Close]

BLAST of CmoCh01G013920.1 vs. TrEMBL
Match: A0A0A0L4D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618460 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.1e-50
Identity = 126/201 (62.69%), Postives = 149/201 (74.13%), Query Frame = 1


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLP-TSSG 60
           MA+QW++MY+QNN  N QL F+LS H  +++++NS VVSDSTVVT A+SSA T P +SSG
Sbjct: 1   MANQWLNMYNQNNLSNTQLPFHLSHHDHLSSNNNSDVVSDSTVVTTAVSSANTPPASSSG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS---NNASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPS   NN  NF+TFGF
Sbjct: 61  LNPDGTRVAKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANNNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAP----PVFQFQNQAPPPPPPLQQPPFMFSLGNSAASETFF 180
           P NS  +FDP + AAY +  P     V QFQNQ   PPPPL     MFSL NS   + F+
Sbjct: 121 PCNSQTLFDPASAAAYQVQDPAQQQSVLQFQNQ---PPPPL-----MFSLSNSGGGDAFY 180

Query: 181 QQGGGLRS--NDSNVNYMGLF 189
           QQGGG RS  N++N+NY G F
Sbjct: 181 QQGGGSRSNNNNNNINYTGGF 193

[Close]

BLAST of CmoCh01G013920.1 vs. TrEMBL
Match: V4M5U0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021568mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 75/161 (46.58%), Postives = 92/161 (57.14%), Query Frame = 1


Query: 3   DQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIPDG 62
           ++W   Y   NN Q  F  S             ++ +TV TA+ S   T  T S L P+ 
Sbjct: 5   NEWSQFY---NNNQTFFTTS------------TITSTTVTTASPSGEAT-STDSRLSPET 64

Query: 63  GRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNA 122
           GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQFTGGPS  A  S  +T GF   +++
Sbjct: 65  GRVTKPARRRSRASRRTPTTLLNTDTSNFRAMVQQFTGGPSAMAFGSGNTTSGFSLTTSS 124

Query: 123 VFDPTVAAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGN 162
             DPT A      P  + FQ  APP PPP  Q  +MFSL N
Sbjct: 125 --DPT-AGSSQQTPWQYNFQPHAPPQPPP--QRAYMFSLSN 144

[Close]

BLAST of CmoCh01G013920.1 vs. TrEMBL
Match: A0A067LFD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-17
Identity = 84/193 (43.52%), Postives = 108/193 (55.96%), Query Frame = 1


Query: 24  HRQVNNDDNSGVVSDSTVVTAAISSATT------------LPTSSGLIPDGGRVSKPVRK 83
           + Q N+   S  VSD+TVVT  I+S+T+             PT++ L P+G RV+KPVR+
Sbjct: 12  NHQHNHTMFSDGVSDATVVTTTITSSTSPTLLGSGSSGSGSPTAAHLSPEG-RVAKPVRR 71

Query: 84  RTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASN------FSTFGFPSNSNAV-FDP 143
           R+RASRRTPTTL NTD  NFRAMVQQFTGGPS   S+       S+F F  N   V  +P
Sbjct: 72  RSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFSSSGSHLTTSSFNFGMNPRQVHVNP 131

Query: 144 TV--AAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGNSAA--SETFFQQGGGLRSNDS 193
            V  A YH       Q+Q Q         QP ++FSLGN++    + FFQ+ G  R    
Sbjct: 132 MVPAAGYH-----NLQYQQQ--------NQPSYLFSLGNNSPGNGDLFFQRLGNPRPTGM 190

[Close]

BLAST of CmoCh01G013920.1 vs. TrEMBL
Match: A0A078HGA8_BRANA (BnaC05g30450D protein OS=Brassica napus GN=BnaC05g30450D PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 73/163 (44.79%), Postives = 91/163 (55.83%), Query Frame = 1


Query: 2   ADQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDS-TVVTAAISSATTLPTSSGLIP 61
           ++ W H+Y  +NNQ                 S + S + T  TAA  S       S L P
Sbjct: 4   SNDWSHLY--SNNQAFY------------TTSTITSTAVTTTTAASPSGEATSMDSRLSP 63

Query: 62  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNS 121
           + GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQFTGGPS  A  S  +T GF   S
Sbjct: 64  ETGRVTKPARRRSRASRRTPTTLLNTDTSNFRAMVQQFTGGPSAMAFGSGNTTSGFSLTS 123

Query: 122 NAVFDPTVAAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGN 162
           ++  DP+ A      P  + +Q  APPPP    Q P+MFSL N
Sbjct: 124 SS--DPS-AGSSQQVPWQYSYQPHAPPPP----QQPYMFSLNN 145

[Close]

BLAST of CmoCh01G013920.1 vs. TrEMBL
Match: A0A0A0KV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-16
Identity = 73/156 (46.79%), Postives = 89/156 (57.05%), Query Frame = 1


Query: 1   MADQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIP 60
           M+  W+  YHQN +   +   SDH   +       VSD+T V    +S  TL  S+GL P
Sbjct: 1   MSGDWLQFYHQNLSSTAAPPPSDH-STSEMFFVDRVSDATGVITTTASVNTLG-STGLNP 60

Query: 61  DGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGP-----SNNASNFST-FG- 120
           +G RV KPVR+R+RASRRTPTTL NTD  NFRAMVQQFTGGP     S+ + NFS  FG 
Sbjct: 61  EG-RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGG 120

Query: 121 -----FPSNSNAVFDPTVAAYHLDAPPVFQFQNQAP 145
                FP++ NA   P  + Y L  PP  Q  N  P
Sbjct: 121 IHQSNFPTSQNATISPPPSGYLLQQPP--QLYNHNP 151

[Close]

BLAST of CmoCh01G013920.1 vs. TAIR10
Match: AT3G22160.1 (AT3G22160.1 VQ motif-containing protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.7e-18
Identity = 76/182 (41.76%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 30  DDNSGVVSDSTVVTAAISSAT---TLPTSSGLIPDGGRVSKPVRKRTRASRRTPTTLFNT 89
           ++N    + ST  + A+++ T   T    S L P+ GRV+KP R+R+RASRRTPTTL NT
Sbjct: 12  NNNQTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRVTKPTRRRSRASRRTPTTLLNT 71

Query: 90  DAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNAVFDPTVAAYHLDAPPVFQFQNQAP 149
           D +NFRAMVQQ+TGGPS  A  S  +T  F   S++  DP+ A     AP  + FQ  AP
Sbjct: 72  DTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSS--DPS-AGSSQQAPWQYNFQPHAP 131

Query: 150 PPPPPLQQPPFMFSLGNSAASETFFQQGGGLRSNDSNVNYM-----GLFDGSSPTAQNPR 202
             PP   Q P+MFSL N      +        SN +N N M     G  DGS      P 
Sbjct: 132 LQPP---QRPYMFSLNNVNPVVGY--------SNMNNPNTMVSGVFGTVDGSGGGGSAPS 179

[Close]

BLAST of CmoCh01G013920.1 vs. TAIR10
Match: AT4G15120.1 (AT4G15120.1 VQ motif-containing protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-17
Identity = 68/147 (46.26%), Postives = 85/147 (57.82%), Query Frame = 1


Query: 28  NNDDNSGVVSDSTVVTAAISSATTLPTS-----SGLIPDGGRVSKPVRKRTRASRRTPTT 87
           +N+D S   ++ T  T A S+ TT  T+     S L PD  RV+KP R+R+RASRRTPTT
Sbjct: 4   SNNDWSQFYNNQTFFTTATSTVTTTTTTATSADSPLSPDNRRVAKPTRRRSRASRRTPTT 63

Query: 88  LFNTDAANFRAMVQQFTGGPSNNASNFS-TFGFPSNSNAVFDPTVAAYHLDAPPVFQFQN 147
           LFNTD ANFRAMVQQFTGGPS  A   S + GF   S+   DPT A            QN
Sbjct: 64  LFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSLTSS---DPT-AGVSSSPWQYANLQN 123

Query: 148 QAPPPPPPLQQPPFMFSLGNSAASETF 169
           Q        QQ P+MFS  N+ ++ ++
Sbjct: 124 QMAHNELMQQQRPYMFSSSNNVSTLSY 146

[Close]

BLAST of CmoCh01G013920.1 vs. TAIR10
Match: AT1G35830.1 (AT1G35830.1 VQ motif-containing protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-07
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 66  SKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGP--------SNNASNFSTFGFPSN 118
           S+  RKRTRASRR PTT+  TD +NFRAMVQ+FTG P        S+    F  F  PS+
Sbjct: 96  SRNPRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSD 155

[Close]

BLAST of CmoCh01G013920.1 vs. TAIR10
Match: AT4G39720.1 (AT4G39720.1 VQ motif-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1


Query: 6   IHMYHQNNNQQLS---FNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIPDG 65
           +H  H NNN  +    FN +    VN   +   +S   + T++ +S+     + G+I   
Sbjct: 57  LHFDHNNNNSLIPPNYFNNNTFLPVNQQPDP--ISQLDLRTSSATSSLPPTNNIGVI--- 116

Query: 66  GRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS----NNASNFST 112
               K  +KR+RASRR PTT+  TD +NFRAMVQ+FTG P+    NN S  +T
Sbjct: 117 ----KKTKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNSIVNT 160

[Close]

BLAST of CmoCh01G013920.1 vs. NCBI nr
Match: gi|659129448|ref|XP_008464691.1| (PREDICTED: GATA zinc finger domain-containing protein 11-like [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-51
Identity = 130/205 (63.41%), Postives = 152/205 (74.15%), Query Frame = 1


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLP-TSSG 60
           MA+QW++MY+QNN  N QL F+LSDH  +++++NS VVSDSTVVT A+SSATT P +SSG
Sbjct: 1   MANQWLNMYNQNNLPNTQLPFHLSDHDHLSSNNNSDVVSDSTVVTTAVSSATTPPASSSG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSN---NASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPSN   N  NF+TFGF
Sbjct: 61  LNPDGTRVTKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANSNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAPP------VFQFQNQAPPPPPPLQQPPFMFSLGNSAASET 180
           P NS  ++DP + AAY +  PP      VFQFQNQ    PPPL     MFSL NS   + 
Sbjct: 121 PCNSQTLYDPASAAAYQVQDPPQQQQQSVFQFQNQ----PPPL-----MFSLSNSGGGDA 180

Query: 181 FFQQGGGLRS----NDSNVNYMGLF 189
           FFQQGGG RS    N++N NYMG F
Sbjct: 181 FFQQGGGSRSNNNNNNNNRNYMGGF 196

[Close]

BLAST of CmoCh01G013920.1 vs. NCBI nr
Match: gi|778695480|ref|XP_011654003.1| (PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-49
Identity = 126/201 (62.69%), Postives = 149/201 (74.13%), Query Frame = 1


Query: 1   MADQWIHMYHQNN--NQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLP-TSSG 60
           MA+QW++MY+QNN  N QL F+LS H  +++++NS VVSDSTVVT A+SSA T P +SSG
Sbjct: 1   MANQWLNMYNQNNLSNTQLPFHLSHHDHLSSNNNSDVVSDSTVVTTAVSSANTPPASSSG 60

Query: 61  LIPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPS---NNASNFSTFGF 120
           L PDG RV+KPVRKR+RASRRTPTTL NTDAANFRAMVQQFTGGPS   NN  NF+TFGF
Sbjct: 61  LNPDGTRVAKPVRKRSRASRRTPTTLLNTDAANFRAMVQQFTGGPSNANNNLHNFATFGF 120

Query: 121 PSNSNAVFDP-TVAAYHLDAP----PVFQFQNQAPPPPPPLQQPPFMFSLGNSAASETFF 180
           P NS  +FDP + AAY +  P     V QFQNQ   PPPPL     MFSL NS   + F+
Sbjct: 121 PCNSQTLFDPASAAAYQVQDPAQQQSVLQFQNQ---PPPPL-----MFSLSNSGGGDAFY 180

Query: 181 QQGGGLRS--NDSNVNYMGLF 189
           QQGGG RS  N++N+NY G F
Sbjct: 181 QQGGGSRSNNNNNNINYTGGF 193

[Close]

BLAST of CmoCh01G013920.1 vs. NCBI nr
Match: gi|567196149|ref|XP_006406205.1| (hypothetical protein EUTSA_v10021568mg [Eutrema salsugineum])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 75/161 (46.58%), Postives = 92/161 (57.14%), Query Frame = 1


Query: 3   DQWIHMYHQNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATTLPTSSGLIPDG 62
           ++W   Y   NN Q  F  S             ++ +TV TA+ S   T  T S L P+ 
Sbjct: 5   NEWSQFY---NNNQTFFTTS------------TITSTTVTTASPSGEAT-STDSRLSPET 64

Query: 63  GRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNA--SNFSTFGFPSNSNA 122
           GRV+KP R+R+RASRRTPTTL NTD +NFRAMVQQFTGGPS  A  S  +T GF   +++
Sbjct: 65  GRVTKPARRRSRASRRTPTTLLNTDTSNFRAMVQQFTGGPSAMAFGSGNTTSGFSLTTSS 124

Query: 123 VFDPTVAAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGN 162
             DPT A      P  + FQ  APP PPP  Q  +MFSL N
Sbjct: 125 --DPT-AGSSQQTPWQYNFQPHAPPQPPP--QRAYMFSLSN 144

[Close]

BLAST of CmoCh01G013920.1 vs. NCBI nr
Match: gi|643736478|gb|KDP42784.1| (hypothetical protein JCGZ_00483 [Jatropha curcas])

HSP 1 Score: 96.3 bits (238), Expect = 6.6e-17
Identity = 84/193 (43.52%), Postives = 108/193 (55.96%), Query Frame = 1


Query: 24  HRQVNNDDNSGVVSDSTVVTAAISSATT------------LPTSSGLIPDGGRVSKPVRK 83
           + Q N+   S  VSD+TVVT  I+S+T+             PT++ L P+G RV+KPVR+
Sbjct: 12  NHQHNHTMFSDGVSDATVVTTTITSSTSPTLLGSGSSGSGSPTAAHLSPEG-RVAKPVRR 71

Query: 84  RTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASN------FSTFGFPSNSNAV-FDP 143
           R+RASRRTPTTL NTD  NFRAMVQQFTGGPS   S+       S+F F  N   V  +P
Sbjct: 72  RSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFSSSGSHLTTSSFNFGMNPRQVHVNP 131

Query: 144 TV--AAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGNSAA--SETFFQQGGGLRSNDS 193
            V  A YH       Q+Q Q         QP ++FSLGN++    + FFQ+ G  R    
Sbjct: 132 MVPAAGYH-----NLQYQQQ--------NQPSYLFSLGNNSPGNGDLFFQRLGNPRPTGM 190

[Close]

BLAST of CmoCh01G013920.1 vs. NCBI nr
Match: gi|802562542|ref|XP_012066426.1| (PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas])

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16
Identity = 86/206 (41.75%), Postives = 112/206 (54.37%), Query Frame = 1


Query: 11  QNNNQQLSFNLSDHRQVNNDDNSGVVSDSTVVTAAISSATT------------LPTSSGL 70
           QN +    +    + Q N+   S  VSD+TVVT  I+S+T+             PT++ L
Sbjct: 3   QNMSNPSDWGQFYNHQHNHTMFSDGVSDATVVTTTITSSTSPTLLGSGSSGSGSPTAAHL 62

Query: 71  IPDGGRVSKPVRKRTRASRRTPTTLFNTDAANFRAMVQQFTGGPSNNASN------FSTF 130
            P+G RV+KPVR+R+RASRRTPTTL NTD  NFRAMVQQFTGGPS   S+       S+F
Sbjct: 63  SPEG-RVAKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFSSSGSHLTTSSF 122

Query: 131 GFPSNSNAV-FDPTV--AAYHLDAPPVFQFQNQAPPPPPPLQQPPFMFSLGNSAA--SET 190
            F  N   V  +P V  A YH       Q+Q Q         QP ++FSLGN++    + 
Sbjct: 123 NFGMNPRQVHVNPMVPAAGYH-----NLQYQQQ--------NQPSYLFSLGNNSPGNGDL 182

Query: 191 FFQQGGGLRSNDSNVNYMGL-FDGSS 193
           FFQ+ G  R    +V+  GL  DG S
Sbjct: 183 FFQRLGNPRPTGMDVSSDGLVMDGVS 194

The following BLAST results are available for this feature:

BLAST of CmoCh01G013920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ22_ARATH	6.5e-17	41.76	VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1	[more]

BLAST of CmoCh01G013920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D1_CUCSA	9.1e-50	62.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618460 PE=4 SV=1	[more]
V4M5U0_EUTSA	1.6e-17	46.58	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021568mg PE=4 SV=1	[more]
A0A067LFD1_JATCU	4.6e-17	43.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1	[more]
A0A078HGA8_BRANA	3.0e-16	44.79	BnaC05g30450D protein OS=Brassica napus GN=BnaC05g30450D PE=4 SV=1	[more]
A0A0A0KV74_CUCSA	3.9e-16	46.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1	[more]

BLAST of CmoCh01G013920.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22160.1	3.7e-18	41.76	VQ motif-containing protein	[more]
AT4G15120.1	2.4e-17	46.26	VQ motif-containing protein	[more]
AT1G35830.1	2.9e-07	51.67	VQ motif-containing protein	[more]
AT4G39720.1	3.2e-06	37.17	VQ motif-containing protein	[more]

BLAST of CmoCh01G013920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129448\|ref\|XP_008464691.1\|	1.8e-51	63.41	PREDICTED: GATA zinc finger domain-containing protein 11-like [Cucumis melo]	[more]
gi\|778695480\|ref\|XP_011654003.1\|	1.3e-49	62.69	PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus]	[more]
gi\|567196149\|ref\|XP_006406205.1\|	2.3e-17	46.58	hypothetical protein EUTSA_v10021568mg [Eutrema salsugineum]	[more]
gi\|643736478\|gb\|KDP42784.1\|	6.6e-17	43.52	hypothetical protein JCGZ_00483 [Jatropha curcas]	[more]
gi\|802562542\|ref\|XP_012066426.1\|	3.3e-16	41.75	PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G013920	CmoCh01G013920	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013920.1	CmoCh01G013920.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013920.1.exon.1	CmoCh01G013920.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G013920.1.CDS.1	CmoCh01G013920.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 78..104 score: 9.4
None	No IPR available	PANTHER	PTHR33179	FAMILY NOT NAMED	coord: 4..171 score: 6.7
None	No IPR available	PANTHER	PTHR33179:SF7	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23	coord: 4..171 score: 6.7