CmoCh01G009680 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G009680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 6182781 .. 6183260 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGAAGATGACTTCAGTTTCCCCACCGCCTTCGACTCCTTCACCCGCTGCAGCATCGATTCCCCGCCTCTCTGGCGCGCCTCTCCCGCCGCATCTCCCATTTCCGATTCCAACTTCAGAGACACCACGGCCCATACTGACAGGACCGATCGCTTCGCCGCCGTCACATTTACGTCCTCCTTGCACAGGAGGAGGAAACTCGAGAGCGACGAGGAGACGGATGCCGCGGCGGCGGAGAAGATGGATGTGCTCTGGGAGAATCTCAACGAGGACTTATCGAGGAATCGAAGATCGAGGTTGATGAAATCGGCGGAGATTGAATCGGTTGAGATAGCGGATTTGGATCCGTCGCAAACGTCGAGGAGCACGGCGACGAGGAGGAAGAAGACGACGACGGGGATTGTTAAGGTTTTGAAGAAGCTTTTCTTGATGCAGAACACTTCCCGCCGGAATCTGGAAACTCGATCAGCCTGA

mRNA sequence

ATGGCGGTTGAAGATGACTTCAGTTTCCCCACCGCCTTCGACTCCTTCACCCGCTGCAGCATCGATTCCCCGCCTCTCTGGCGCGCCTCTCCCGCCGCATCTCCCATTTCCGATTCCAACTTCAGAGACACCACGGCCCATACTGACAGGACCGATCGCTTCGCCGCCGTCACATTTACGTCCTCCTTGCACAGGAGGAGGAAACTCGAGAGCGACGAGGAGACGGATGCCGCGGCGGCGGAGAAGATGGATGTGCTCTGGGAGAATCTCAACGAGGACTTATCGAGGAATCGAAGATCGAGGTTGATGAAATCGGCGGAGATTGAATCGGTTGAGATAGCGGATTTGGATCCGTCGCAAACGTCGAGGAGCACGGCGACGAGGAGGAAGAAGACGACGACGGGGATTGTTAAGGTTTTGAAGAAGCTTTTCTTGATGCAGAACACTTCCCGCCGGAATCTGGAAACTCGATCAGCCTGA

Coding sequence (CDS)

ATGGCGGTTGAAGATGACTTCAGTTTCCCCACCGCCTTCGACTCCTTCACCCGCTGCAGCATCGATTCCCCGCCTCTCTGGCGCGCCTCTCCCGCCGCATCTCCCATTTCCGATTCCAACTTCAGAGACACCACGGCCCATACTGACAGGACCGATCGCTTCGCCGCCGTCACATTTACGTCCTCCTTGCACAGGAGGAGGAAACTCGAGAGCGACGAGGAGACGGATGCCGCGGCGGCGGAGAAGATGGATGTGCTCTGGGAGAATCTCAACGAGGACTTATCGAGGAATCGAAGATCGAGGTTGATGAAATCGGCGGAGATTGAATCGGTTGAGATAGCGGATTTGGATCCGTCGCAAACGTCGAGGAGCACGGCGACGAGGAGGAAGAAGACGACGACGGGGATTGTTAAGGTTTTGAAGAAGCTTTTCTTGATGCAGAACACTTCCCGCCGGAATCTGGAAACTCGATCAGCCTGA

Homology

[Close]

BLAST of CmoCh01G009680 vs. TrEMBL
Match: A0A0A0K672_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G283910 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 102/179 (56.98%), Postives = 122/179 (68.16%), Query Frame = 1


Query: 1   MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPIS-------DSNFRDTTAHTDRTDR 60
           MAVE+DFSFPTA + F RC IDSPPLW  SP+ASPIS       D NFRDT +  + ++R
Sbjct: 1   MAVEEDFSFPTALEPFNRCGIDSPPLWHLSPSASPISYPQQTSCDWNFRDTASDGEISNR 60

Query: 61  FAAVTFTSSLHRRRKLESD------EETDAAAAEKMDVLWENLNEDLSRNRRSRLMKSAE 120
           F +    +SL RRR+  SD      EE +A AAEKMDVLWEN NE+LSR+RRSRLMK+AE
Sbjct: 61  FPS----ASLQRRRRFLSDAAVNCEEEEEAEAAEKMDVLWENFNEELSRSRRSRLMKTAE 120

Query: 121 IESVE-------IADLDPSQTSRSTATRRKKT-TTGIVKVLKKLFLMQNTSRRNLETRS 159
            E  E       +A+ + S+TS + ATRRK    T  VKVLKKLFLM N SRRNL+TRS
Sbjct: 121 TEENETVKARRRMAEFNLSETSGAMATRRKTMGKTAFVKVLKKLFLMHNNSRRNLQTRS 175

[Close]

BLAST of CmoCh01G009680 vs. TrEMBL
Match: A0A0L9TCQ6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan518s000100 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 1


Query: 5   DDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFTSSLH 64
           ++FSFP   D+ +  +IDSPPLW  SPAASP   + ++  T   +  D F A    + +H
Sbjct: 4   EEFSFPRISDTCSH-NIDSPPLWNLSPAASP---NPYKGNTR--EENDCFGAAKLVAEVH 63

Query: 65  R--------RRKL------ESDEETDAAAAEKMDVLWENLNEDL-SRNRRSRLMKSAEIE 124
           R        RRK       E +EE +    EKMD+LWE+ NE+L S    +    S+  E
Sbjct: 64  RKSFSCVENRRKRNGFEEEEEEEEEEEEEEEKMDLLWEDFNEELYSTTTTTGSATSSSRE 123

Query: 125 SVEIADLDPSQTSRST------ATRRKKTTTGIVKVLKKLFLMQNTSRRN 154
            VE         +++T       T+ K     IVKV KKLF + N+  R+
Sbjct: 124 VVEFRSAHELTLAKTTHNSLLHPTKNKPAMVVIVKVFKKLFSIHNSHGRS 167

[Close]

BLAST of CmoCh01G009680 vs. TrEMBL
Match: A0A061FJY8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_036336 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-07
Identity = 56/167 (33.53%), Postives = 82/167 (49.10%), Query Frame = 1


Query: 1   MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASP--------ISDSNFRDTTAHTDRTD 60
           MA  ++FSFPT    +  C IDSPPLWR SPAASP           S   +     DR +
Sbjct: 1   MASTEEFSFPTTAALYP-CGIDSPPLWRLSPAASPDVFLDRKAKECSTREEEDCFPDRPE 60

Query: 61  R-------FAAVTFTSSLHRRRKLESDEETDAAAAEKMDVLWENLNEDLSRNRRSRLMKS 120
           +       F+ V   S +  ++    DEE      EKMD+LWE+ NE+L  +R SR    
Sbjct: 61  KKHQERKSFSYVEKGSKVSSKKVAAEDEE------EKMDLLWEDFNEELPTSRSSR---- 120

Query: 121 AEIESVEIADLDPSQTSRSTATR---RKKTTTGIVKVLKKLFLMQNT 150
           +  + VE+      + S++ A     R+      ++VL+KLFL+ N+
Sbjct: 121 SSGDMVELGCAQALKLSKNNAAMFPPRRPGMLVFMRVLRKLFLVHNS 156

[Close]

BLAST of CmoCh01G009680 vs. TrEMBL
Match: W9R823_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016453 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-07
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 1


Query: 5   DDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDR--------FAA 64
           +DFSFPT  +     +IDSPPLWR+  A+S  +D     T+   ++           F  
Sbjct: 4   EDFSFPT--EKIPSSTIDSPPLWRSPTASSSTADDRQEITSKEEEQLSTEVGKKLAGFNP 63

Query: 65  VTFTSSLHRRRKLESDEE--TDAAAAEKMDVLWENLNEDLSRNRRSRL---MKSAEIESV 124
           +   S   R RK +  EE   +    EKMD LWE+ NE+L   R SR    M S +    
Sbjct: 64  IRSLSCTGRGRKRDGVEEGENEDLQEEKMDSLWEDFNEELWSCRSSRADSDMFSGDHHHH 123

Query: 125 EIADLDP-SQTSRSTATRRKK--TTTGIVKVLKKLFLMQNTS 151
           ++ +LD   Q  + + TR  K  +   ++K+LKKLFL+QN S
Sbjct: 124 QMVELDRVDQALKLSKTRNNKPHSMVIVLKILKKLFLLQNHS 163

[Close]

BLAST of CmoCh01G009680 vs. TrEMBL
Match: A0A151T4T2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_016589 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 52/151 (34.44%), Postives = 75/151 (49.67%), Query Frame = 1


Query: 5   DDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAV---TFTS 64
           ++FSFP   D+    +IDSPPLW  SPAASP      +       R    A     +F+ 
Sbjct: 4   EEFSFPRINDTCAH-NIDSPPLWNLSPAASPNPYQGIKGEENEFFRAKLVAEAQRKSFSY 63

Query: 65  SLHRRRKLESDEETDAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVE-IADLDPSQ 124
             + R+K+  +EE D    E+MD+LWE+LNE+L     S    S E+     +  L  + 
Sbjct: 64  VENCRKKIGLEEEED----ERMDLLWEDLNEELYTTTGSATSSSREVVEFRCVPSLTVAN 123

Query: 125 TSRST--ATRRKKTTTGIVKVLKKLFLMQNT 150
            ++     TR K     IVKV+KKLF + N+
Sbjct: 124 ANKGALLPTRNKPGMVVIVKVIKKLFSINNS 149

[Close]

BLAST of CmoCh01G009680 vs. NCBI nr
Match: gi|659123054|ref|XP_008461465.1| (PREDICTED: uncharacterized protein LOC103500054 isoform X1 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 5.9e-37
Identity = 101/180 (56.11%), Postives = 123/180 (68.33%), Query Frame = 1


Query: 1   MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPIS-------DSNFRDTTAHTDRTDR 60
           MAVEDDFSFPTA + F RC +DSPPLWR SP+ASPIS       D NFRDT +  + ++R
Sbjct: 1   MAVEDDFSFPTALEPFNRCGVDSPPLWRLSPSASPISYRQQISCDRNFRDTASDGEISNR 60

Query: 61  FAAVTFTSSLHRRRKL-------ESDEETDAAAAEKMDVLWENLNEDLSRNRRSRLMKSA 120
           F + +F     RRR L       E +EE + A AEKMDVLWEN NE+LSR+RRSRLMK+A
Sbjct: 61  FPSASFQ---RRRRFLSDAAVNGEEEEEEEEAVAEKMDVLWENFNEELSRSRRSRLMKTA 120

Query: 121 EIESVEI-------ADLDPSQTSRSTATRRKKT-TTGIVKVLKKLFLMQNTSRRNLETRS 159
           E+E  EI       A+L+  +TS + AT RK T  T  VKVLKKLFLM ++SRRNL+TRS
Sbjct: 121 ELEENEIVKARQRMAELNLPETSGAMATGRKATGKTAFVKVLKKLFLMHSSSRRNLQTRS 177

[Close]

BLAST of CmoCh01G009680 vs. NCBI nr
Match: gi|778730295|ref|XP_011659753.1| (PREDICTED: uncharacterized protein LOC105436259 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36
Identity = 102/179 (56.98%), Postives = 122/179 (68.16%), Query Frame = 1


Query: 1   MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPIS-------DSNFRDTTAHTDRTDR 60
           MAVE+DFSFPTA + F RC IDSPPLW  SP+ASPIS       D NFRDT +  + ++R
Sbjct: 1   MAVEEDFSFPTALEPFNRCGIDSPPLWHLSPSASPISYPQQTSCDWNFRDTASDGEISNR 60

Query: 61  FAAVTFTSSLHRRRKLESD------EETDAAAAEKMDVLWENLNEDLSRNRRSRLMKSAE 120
           F +    +SL RRR+  SD      EE +A AAEKMDVLWEN NE+LSR+RRSRLMK+AE
Sbjct: 61  FPS----ASLQRRRRFLSDAAVNCEEEEEAEAAEKMDVLWENFNEELSRSRRSRLMKTAE 120

Query: 121 IESVE-------IADLDPSQTSRSTATRRKKT-TTGIVKVLKKLFLMQNTSRRNLETRS 159
            E  E       +A+ + S+TS + ATRRK    T  VKVLKKLFLM N SRRNL+TRS
Sbjct: 121 TEENETVKARRRMAEFNLSETSGAMATRRKTMGKTAFVKVLKKLFLMHNNSRRNLQTRS 175

[Close]

BLAST of CmoCh01G009680 vs. NCBI nr
Match: gi|920681506|gb|KOM28302.1| (hypothetical protein LR48_Vigan518s000100 [Vigna angularis])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 1


Query: 5   DDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFTSSLH 64
           ++FSFP   D+ +  +IDSPPLW  SPAASP   + ++  T   +  D F A    + +H
Sbjct: 4   EEFSFPRISDTCSH-NIDSPPLWNLSPAASP---NPYKGNTR--EENDCFGAAKLVAEVH 63

Query: 65  R--------RRKL------ESDEETDAAAAEKMDVLWENLNEDL-SRNRRSRLMKSAEIE 124
           R        RRK       E +EE +    EKMD+LWE+ NE+L S    +    S+  E
Sbjct: 64  RKSFSCVENRRKRNGFEEEEEEEEEEEEEEEKMDLLWEDFNEELYSTTTTTGSATSSSRE 123

Query: 125 SVEIADLDPSQTSRST------ATRRKKTTTGIVKVLKKLFLMQNTSRRN 154
            VE         +++T       T+ K     IVKV KKLF + N+  R+
Sbjct: 124 VVEFRSAHELTLAKTTHNSLLHPTKNKPAMVVIVKVFKKLFSIHNSHGRS 167

[Close]

BLAST of CmoCh01G009680 vs. NCBI nr
Match: gi|950932464|ref|XP_014509696.1| (PREDICTED: uncharacterized protein LOC106768848 [Vigna radiata var. radiata])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 1


Query: 5   DDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFTSSLH 64
           ++FSFP   D+ +  +IDSPPLW  SPAASP   + +   T   +  D F A    + +H
Sbjct: 4   EEFSFPRISDTCSH-NIDSPPLWNLSPAASP---NPYHGNTRREN--DCFGAAKLVAEVH 63

Query: 65  R--------RRKLES--DEETDAAAAEKMDVLWENLNEDL---SRNRRSRLMKSAEI--- 124
           R        RRK     DEE +    EKMD+LWE+ NE+L   +    S    S E+   
Sbjct: 64  RKSFSCVENRRKRNGFEDEEEEEEEEEKMDLLWEDFNEELYSTTTTTGSATSSSREVVEF 123

Query: 125 -ESVEIADLDPSQTSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRN 154
             + E+     +Q S    T+ K     IVK+ KKLF + N+  R+
Sbjct: 124 RSAHELTLAKTTQNSLLHPTKNKPAMVVIVKIFKKLFSIHNSHGRS 163

[Close]

BLAST of CmoCh01G009680 vs. NCBI nr
Match: gi|590603254|ref|XP_007019958.1| (Uncharacterized protein TCM_036336 [Theobroma cacao])

HSP 1 Score: 62.8 bits (151), Expect = 6.4e-07
Identity = 56/167 (33.53%), Postives = 82/167 (49.10%), Query Frame = 1


Query: 1   MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASP--------ISDSNFRDTTAHTDRTD 60
           MA  ++FSFPT    +  C IDSPPLWR SPAASP           S   +     DR +
Sbjct: 1   MASTEEFSFPTTAALYP-CGIDSPPLWRLSPAASPDVFLDRKAKECSTREEEDCFPDRPE 60

Query: 61  R-------FAAVTFTSSLHRRRKLESDEETDAAAAEKMDVLWENLNEDLSRNRRSRLMKS 120
           +       F+ V   S +  ++    DEE      EKMD+LWE+ NE+L  +R SR    
Sbjct: 61  KKHQERKSFSYVEKGSKVSSKKVAAEDEE------EKMDLLWEDFNEELPTSRSSR---- 120

Query: 121 AEIESVEIADLDPSQTSRSTATR---RKKTTTGIVKVLKKLFLMQNT 150
           +  + VE+      + S++ A     R+      ++VL+KLFL+ N+
Sbjct: 121 SSGDMVELGCAQALKLSKNNAAMFPPRRPGMLVFMRVLRKLFLVHNS 156

The following BLAST results are available for this feature:

BLAST of CmoCh01G009680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G009680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K672_CUCSA	7.0e-37	56.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G283910 PE=4 SV=1	[more]
A0A0L9TCQ6_PHAAN	8.9e-08	34.12	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan518s000100 PE=4 SV=1	[more]
A0A061FJY8_THECC	4.4e-07	33.53	Uncharacterized protein OS=Theobroma cacao GN=TCM_036336 PE=4 SV=1	[more]
W9R823_9ROSA	7.5e-07	34.57	Uncharacterized protein OS=Morus notabilis GN=L484_016453 PE=4 SV=1	[more]
A0A151T4T2_CAJCA	2.2e-06	34.44	Uncharacterized protein OS=Cajanus cajan GN=KK1_016589 PE=4 SV=1	[more]

BLAST of CmoCh01G009680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G009680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123054\|ref\|XP_008461465.1\|	5.9e-37	56.11	PREDICTED: uncharacterized protein LOC103500054 isoform X1 [Cucumis melo]	[more]
gi\|778730295\|ref\|XP_011659753.1\|	1.0e-36	56.98	PREDICTED: uncharacterized protein LOC105436259 [Cucumis sativus]	[more]
gi\|920681506\|gb\|KOM28302.1\|	1.3e-07	34.12	hypothetical protein LR48_Vigan518s000100 [Vigna angularis]	[more]
gi\|950932464\|ref\|XP_014509696.1\|	2.2e-07	34.34	PREDICTED: uncharacterized protein LOC106768848 [Vigna radiata var. radiata]	[more]
gi\|590603254\|ref\|XP_007019958.1\|	6.4e-07	33.53	Uncharacterized protein TCM_036336 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G009680.1	CmoCh01G009680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34666	FAMILY NOT NAMED	coord: 1..151 score: 1.3
None	No IPR available	PANTHER	PTHR34666:SF1	SUBFAMILY NOT NAMED	coord: 1..151 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G009680	CmaCh09G011430	Cucurbita maxima (Rimu)	cmacmoB044
CmoCh01G009680	Cla016362	Watermelon (97103) v1	cmowmB405
CmoCh01G009680	Csa7G283910	Cucumber (Chinese Long) v2	cmocuB478
CmoCh01G009680	MELO3C023663	Melon (DHL92) v3.5.1	cmomeB396
CmoCh01G009680	ClCG09G010460	Watermelon (Charleston Gray)	cmowcgB379
CmoCh01G009680	CSPI07G12110	Wild cucumber (PI 183967)	cmocpiB484
CmoCh01G009680	Lsi02G019380	Bottle gourd (USVL1VR-Ls)	cmolsiB397
CmoCh01G009680	Cp4.1LG02g09250	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G009680	Cp4.1LG06g09330	Cucurbita pepo (Zucchini)	cmocpeB464
CmoCh01G009680	MELO3C023663.2	Melon (DHL92) v3.6.1	cmomedB453
CmoCh01G009680	CsaV3_7G024090	Cucumber (Chinese Long) v3	cmocucB0574
CmoCh01G009680	Cla97C09G173170	Watermelon (97103) v2	cmowmbB498
CmoCh01G009680	Bhi09G001331	Wax gourd	cmowgoB0621

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G009680	CmoCh09G011530	Cucurbita moschata (Rifu)	cmocmoB015

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G009680	Watermelon (97103) v2	cmowmbB491
CmoCh01G009680	Wax gourd	cmowgoB0607
CmoCh01G009680	Wax gourd	cmowgoB0608
CmoCh01G009680	Cucumber (Gy14) v1	cgycmoB0677
CmoCh01G009680	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G009680	Cucurbita maxima (Rimu)	cmacmoB471
CmoCh01G009680	Watermelon (Charleston Gray)	cmowcgB376
CmoCh01G009680	Watermelon (97103) v1	cmowmB401
CmoCh01G009680	Cucumber (Gy14) v2	cgybcmoB914