CmoCh01G003180 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G003180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLate embryogenesis abundant protein 3L-1
LocationCmo_Chr01 : 1522787 .. 1523198 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGATCTTTGTCCCGTGTCATGAACATCTCCAGCCTCGTTTCTCTCATCAGGTATTTATCCATCAAAAAAATTAAATATTTAACGAAGAAAATCTAAATAAATATTTATTAATTTATAGTGTAAAATGCAATCCTTGGAAACGTGGTGTGTGTTGGACAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGTCACAAAGAGTGGCGTCTGGCACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGAAGAAGAAGAAAGAAGGACGGAGATGGCGGCGTGGATCCCAGATCCGGTCACCGGCTACTACCGGCCGGAGAACTACACCAACGTGATCGACGAGGTTGATCTTCGTGCTATGCTATTGAAACCGAAAAGAAACGTAATGAATTGA

mRNA sequence

ATGGCTCGATCTTTGTCCCGTGTCATGAACATCTCCAGCCTCTGTAAAATGCAATCCTTGGAAACGTGGTGTGTGTTGGACAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGTCACAAAGAGTGGCGTCTGGCACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGAAGAAGAAGAAAGAAGGACGGAGATGGCGGCGTGGATCCCAGATCCGGTCACCGGCTACTACCGGCCGGAGAACTACACCAACGTGATCGACGAGGTTGATCTTCGTGCTATGCTATTGAAACCGAAAAGAAACGTAATGAATTGA

Coding sequence (CDS)

ATGGCTCGATCTTTGTCCCGTGTCATGAACATCTCCAGCCTCTGTAAAATGCAATCCTTGGAAACGTGGTGTGTGTTGGACAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGTCACAAAGAGTGGCGTCTGGCACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGAAGAAGAAGAAAGAAGGACGGAGATGGCGGCGTGGATCCCAGATCCGGTCACCGGCTACTACCGGCCGGAGAACTACACCAACGTGATCGACGAGGTTGATCTTCGTGCTATGCTATTGAAACCGAAAAGAAACGTAATGAATTGA
Homology
[Close]
BLAST of CmoCh01G003180 vs. Swiss-Prot
Match: SAG21_ARATH (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana GN=SAG21 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIK 60
           MARS+S V  +S+     S E    + RRGY   ATAA   V+SG  +  V +    ++K
Sbjct: 1   MARSISNVKIVSAFV---SRELSNAIFRRGY--AATAAQGSVSSGGRSGAVAS---AVMK 60

Query: 61  KEEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPKR 106
           K+  E  T+  +W+PDP TGYYRPE  +N ID  +LRA LL  K+
Sbjct: 61  KKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNKQ 97

[Close]
BLAST of CmoCh01G003180 vs. Swiss-Prot
Match: ARG2_VIGRR (Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-09
Identity = 48/108 (44.44%), Postives = 60/108 (55.56%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIK 60
           MARS + V  +S+L       T     R G+ A A AA+Q    G A+ G     G M+ 
Sbjct: 1   MARSFTNVKVLSALVADGFSNT---TTRHGF-AAAAAATQSATRGGASIG-----GNMVP 60

Query: 61  K--EEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPKRN 107
           K  EE+ R  E  +W+PDPVTGYYRPEN TN ID  D+RA +L  K N
Sbjct: 61  KSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVLGKKFN 98

[Close]
BLAST of CmoCh01G003180 vs. Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-08
Identity = 33/76 (43.42%), Postives = 37/76 (48.68%), Query Frame = 1 

Query: 26  LDRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKEEEERRTEMAAWIPDPVTGYYRPE 85
           + RRGY     AA         A G   R   M +    E R   +AW PDPVTGYYRPE
Sbjct: 23  ISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPE 82

Query: 86  NYTNVIDEVDLRAMLL 102
           N    ID  DLR M+L
Sbjct: 83  NCGAEIDAADLREMML 98

[Close]
BLAST of CmoCh01G003180 vs. Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-08
Identity = 33/76 (43.42%), Postives = 37/76 (48.68%), Query Frame = 1 

Query: 26  LDRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKEEEERRTEMAAWIPDPVTGYYRPE 85
           + RRGY     AA         A G   R   M +    E R   +AW PDPVTGYYRPE
Sbjct: 23  ISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPE 82

Query: 86  NYTNVIDEVDLRAMLL 102
           N    ID  +LR MLL
Sbjct: 83  NCGAEIDAAELREMLL 98

[Close]
BLAST of CmoCh01G003180 vs. Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.2e-06
Identity = 33/83 (39.76%), Postives = 40/83 (48.19%), Query Frame = 1 

Query: 26  LDRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKE----EEERRTEMAAWIPDPVTGY 85
           + RRGY A A              G  +R+G M K +      E     +AW PDP+TGY
Sbjct: 23  ISRRGYAAAAPL------------GTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGY 82

Query: 86  YRPENYTNVIDEVDLRAMLLKPK 105
           YRPEN    ID  +LR MLL  K
Sbjct: 83  YRPENRAVEIDPAELREMLLNHK 93

[Close]
BLAST of CmoCh01G003180 vs. TrEMBL
Match: A0A0A0KV78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001860 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.2e-13
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 28  RRGYRAG--ATAASQRVASGTAAEG----VTARSGGMIKKEEEERRTEMAA-WIPDPVTG 87
           RRGY A   A AAS+R  + T A G     T   G +++KEE ER TE AA WIPDPVTG
Sbjct: 26  RRGYTAEPMAMAASERATTSTPAAGGVLPATRSDGVIVEKEESERSTEKAAVWIPDPVTG 85

Query: 88  YYRPENYTNVIDEVDLRAMLLKPKRNVMN 110
            YRPE+  + +D VDLRA LLKP+RN +N
Sbjct: 86  CYRPESNMDEMDAVDLRAKLLKPRRNTVN 114

[Close]
BLAST of CmoCh01G003180 vs. TrEMBL
Match: G9HVM5_CAMSI (Late embryogenesis abundant protein 3L-1 OS=Camellia sinensis GN=LEA3L-1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-11
Identity = 53/107 (49.53%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGY---RAGATAASQRVASGTAAEGVTARSGG 60
           MARS S    +S+           V+DR      R G  AASQ VASG     VTAR G 
Sbjct: 1   MARSFSNAKLLSAF----------VVDRISLAVTRRGYAAASQGVASGP----VTARGGV 60

Query: 61  MIKKEEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPK 105
           M KK+ EE  T+  +W+PDPVTGYYRPEN  N ID  +LR MLLK K
Sbjct: 61  MGKKDGEEEATK-TSWVPDPVTGYYRPENKANEIDVAELREMLLKNK 92

[Close]
BLAST of CmoCh01G003180 vs. TrEMBL
Match: A0A0A0KTB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001850 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = 1 

Query: 19  SLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKEEEE----RRTEMAAWI 78
           +L T  +L RRGY              TA EGV AR GG++KK+EE     R  +  +W+
Sbjct: 7   TLNTLSILFRRGY-------------ATAPEGVAARLGGIMKKKEESLRIGREKKAVSWV 66

Query: 79  PDPVTGYYRPENYTNVIDEVDLRAMLL 102
           PDPVTGYYRPEN    +D  DLRAMLL
Sbjct: 67  PDPVTGYYRPENCGAEMDAADLRAMLL 80

[Close]
BLAST of CmoCh01G003180 vs. TrEMBL
Match: A0A059AX49_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01104 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 53/106 (50.00%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIK 60
           MARSLS    + S   +  +     + RRGY     AASQ VAS  A  G T RS  M K
Sbjct: 1   MARSLSNA-KLFSAALVDGISA--SIARRGY----AAASQGVASSFAKTGAT-RSTVMSK 60

Query: 61  K--EEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPK 105
           K  EE+ R TE  +W+PDP TGYYRPEN    ID  +LRAMLLK K
Sbjct: 61  KTGEEKARSTERVSWVPDPKTGYYRPENRAEEIDVAELRAMLLKNK 98

[Close]
BLAST of CmoCh01G003180 vs. TrEMBL
Match: A0A0A0K996_CUCSA (Protein induced upon tuberization OS=Cucumis sativus GN=Csa_7G398090 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-10
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGYRAGATAASQRVASGTAAEG--VTARSGGM 60
           MARS S   N   L  + S     +L  RGY   A A SQ VAS     G    ARS  +
Sbjct: 1   MARSFS---NAKILSAVVSDGFSSLLSSRGY--AAAAGSQGVASSAVKGGSVAAARSSNL 60

Query: 61  IKKEEEER--RTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPK 105
           +KK  EE+   TE  +W+PDPVTGYYRPEN ++ ID  +LR++LLK K
Sbjct: 61  LKKSGEEKVGTTEKVSWVPDPVTGYYRPENRSDEIDVAELRSILLKNK 103

[Close]
BLAST of CmoCh01G003180 vs. TAIR10
Match: AT4G02380.1 (AT4G02380.1 senescence-associated gene 21)

HSP 1 Score: 67.0 bits (162), Expect = 8.1e-12
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIK 60
           MARS+S V  +S+     S E    + RRGY   ATAA   V+SG  +  V +    ++K
Sbjct: 1   MARSISNVKIVSAFV---SRELSNAIFRRGY--AATAAQGSVSSGGRSGAVAS---AVMK 60

Query: 61  KEEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPKR 106
           K+  E  T+  +W+PDP TGYYRPE  +N ID  +LRA LL  K+
Sbjct: 61  KKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNKQ 97

[Close]
BLAST of CmoCh01G003180 vs. TAIR10
Match: AT1G02820.1 (AT1G02820.1 Late embryogenesis abundant 3 (LEA3) family protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-09
Identity = 39/105 (37.14%), Postives = 53/105 (50.48%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIK 60
           MARSL+         K+QS+     L    +R G  AA++    G+        S   +K
Sbjct: 1   MARSLANA-------KIQSVFGSEKLSNAVFRRGFAAAAKTALDGSV-------STAEMK 60

Query: 61  KEEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPKR 106
           K   E  +E A W+PDP TGYYRPE  +  ID  +LRA+LL  K+
Sbjct: 61  KRAGEASSEKAPWVPDPKTGYYRPETVSEEIDPAELRAILLNNKQ 91

[Close]
BLAST of CmoCh01G003180 vs. TAIR10
Match: AT4G15910.1 (AT4G15910.1 drought-induced 21)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 1 

Query: 2   ARSLSRVMNISSLCKMQSLETWC-VLDRRGYRAGATAASQRV-ASGTAAEGVTARSGGMI 61
           ARSLS    + SLC   S    C ++ RR Y     A SQ V A+G +  G T    G +
Sbjct: 3   ARSLSGA--VKSLCSAASGSLSCSIVLRRSY----VATSQNVTAAGLSKGGSTRVMVGKM 62

Query: 62  KKEEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPK 105
           ++   ++  E +AW PDPVTGYYRP N    ID  +LR +LLK K
Sbjct: 63  EQRGLDQEAE-SAWGPDPVTGYYRPSNRAAEIDPAELRELLLKNK 100

[Close]
BLAST of CmoCh01G003180 vs. NCBI nr
Match: gi|659108673|ref|XP_008454328.1| (PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-13
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 35  ATAASQRVASGTAAEGV--TARSGGMIKKEEEERRTE---MAAWIPDPVTGYYRPENYTN 94
           A AAS+RV S +A  GV   A S G++KKEE ER T     AAW+PDPVTGYYRPENY +
Sbjct: 2   AMAASERVTSTSAGGGVLPAAGSDGVMKKEESERSTTEKAAAAWMPDPVTGYYRPENYVD 61

Query: 95  VIDEVDLRAMLLKPKRNVMN 110
            +D VDLR  LLK +RN +N
Sbjct: 62  EMDPVDLRDKLLKARRNTIN 81

[Close]
BLAST of CmoCh01G003180 vs. NCBI nr
Match: gi|700197661|gb|KGN52819.1| (hypothetical protein Csa_4G001860 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 28  RRGYRAG--ATAASQRVASGTAAEG----VTARSGGMIKKEEEERRTEMAA-WIPDPVTG 87
           RRGY A   A AAS+R  + T A G     T   G +++KEE ER TE AA WIPDPVTG
Sbjct: 26  RRGYTAEPMAMAASERATTSTPAAGGVLPATRSDGVIVEKEESERSTEKAAVWIPDPVTG 85

Query: 88  YYRPENYTNVIDEVDLRAMLLKPKRNVMN 110
            YRPE+  + +D VDLRA LLKP+RN +N
Sbjct: 86  CYRPESNMDEMDAVDLRAKLLKPRRNTVN 114

[Close]
BLAST of CmoCh01G003180 vs. NCBI nr
Match: gi|363497938|gb|AEW24432.1| (late embryogenesis abundant protein 3L-1 [Camellia sinensis])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 53/107 (49.53%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGY---RAGATAASQRVASGTAAEGVTARSGG 60
           MARS S    +S+           V+DR      R G  AASQ VASG     VTAR G 
Sbjct: 1   MARSFSNAKLLSAF----------VVDRISLAVTRRGYAAASQGVASGP----VTARGGV 60

Query: 61  MIKKEEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPK 105
           M KK+ EE  T+  +W+PDPVTGYYRPEN  N ID  +LR MLLK K
Sbjct: 61  MGKKDGEEEATK-TSWVPDPVTGYYRPENKANEIDVAELREMLLKNK 92

[Close]
BLAST of CmoCh01G003180 vs. NCBI nr
Match: gi|702435555|ref|XP_010069902.1| (PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Eucalyptus grandis])

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 53/106 (50.00%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 1   MARSLSRVMNISSLCKMQSLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIK 60
           MARSLS    + S   +  +     + RRGY     AASQ VAS  A  G T RS  M K
Sbjct: 1   MARSLSNA-KLFSAALVDGISA--SIARRGY----AAASQGVASSFAKTGAT-RSTVMSK 60

Query: 61  K--EEEERRTEMAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPK 105
           K  EE+ R TE  +W+PDP TGYYRPEN    ID  +LRAMLLK K
Sbjct: 61  KTGEEKARSTERVSWVPDPKTGYYRPENRAEEIDVAELRAMLLKNK 98

[Close]
BLAST of CmoCh01G003180 vs. NCBI nr
Match: gi|778689326|ref|XP_011652940.1| (PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = 1 

Query: 19  SLETWCVLDRRGYRAGATAASQRVASGTAAEGVTARSGGMIKKEEEE----RRTEMAAWI 78
           +L T  +L RRGY              TA EGV AR GG++KK+EE     R  +  +W+
Sbjct: 7   TLNTLSILFRRGY-------------ATAPEGVAARLGGIMKKKEESLRIGREKKAVSWV 66

Query: 79  PDPVTGYYRPENYTNVIDEVDLRAMLL 102
           PDPVTGYYRPEN    +D  DLRAMLL
Sbjct: 67  PDPVTGYYRPENCGAEMDAADLRAMLL 80

The following BLAST results are available for this feature:
BLAST of CmoCh01G003180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SAG21_ARATH1.4e-1042.86Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana GN=... [more]
ARG2_VIGRR1.6e-0944.44Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 ... [more]
LEA5A_GOSHI6.7e-0843.42Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 ... [more]
LEA5D_GOSHI6.7e-0843.42Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 ... [more]
LEA5_CITSI8.2e-0639.76Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1[more]
BLAST of CmoCh01G003180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV78_CUCSA8.2e-1355.06Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001860 PE=4 SV=1[more]
G9HVM5_CAMSI7.7e-1149.53Late embryogenesis abundant protein 3L-1 OS=Camellia sinensis GN=LEA3L-1 PE=2 SV... [more]
A0A0A0KTB8_CUCSA2.9e-1048.28Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001850 PE=4 SV=1[more]
A0A059AX49_EUCGR2.9e-1050.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01104 PE=4 SV=1[more]
A0A0A0K996_CUCSA6.5e-1046.30Protein induced upon tuberization OS=Cucumis sativus GN=Csa_7G398090 PE=4 SV=1[more]
BLAST of CmoCh01G003180 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G02380.18.1e-1242.86 senescence-associated gene 21[more]
AT1G02820.18.4e-0937.14 Late embryogenesis abundant 3 (LEA3) family protein[more]
AT4G15910.11.9e-0841.90 drought-induced 21[more]
BLAST of CmoCh01G003180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108673|ref|XP_008454328.1|5.3e-1358.75PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis melo][more]
gi|700197661|gb|KGN52819.1|1.2e-1255.06hypothetical protein Csa_4G001860 [Cucumis sativus][more]
gi|363497938|gb|AEW24432.1|1.1e-1049.53late embryogenesis abundant protein 3L-1 [Camellia sinensis][more]
gi|702435555|ref|XP_010069902.1|4.2e-1050.00PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Eucalyptus grandis][more]
gi|778689326|ref|XP_011652940.1|4.2e-1048.28PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0071310 cellular response to organic substance
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0033554 cellular response to stress
biological_process GO:0006952 defense response
biological_process GO:0009605 response to external stimulus
biological_process GO:0007165 signal transduction
biological_process GO:0001101 response to acid chemical
biological_process GO:0009409 response to cold
biological_process GO:1901700 response to oxygen-containing compound
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G003180.1CmoCh01G003180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA5-typePFAMPF03242LEA_3coord: 1..101
score: 2.1
NoneNo IPR availablePANTHERPTHR33509FAMILY NOT NAMEDcoord: 1..108
score: 1.1
NoneNo IPR availablePANTHERPTHR33509:SF5LATE EMBRYOGENESIS ABUNDANT 3 (LEA3) FAMILY PROTEINcoord: 1..108
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G003180Cucsa.097030Cucumber (Gy14) v1cgycmoB0192
CmoCh01G003180Cucsa.205500Cucumber (Gy14) v1cgycmoB0609
CmoCh01G003180CmaCh14G009090Cucurbita maxima (Rimu)cmacmoB257
CmoCh01G003180CmaCh01G003050Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G003180Cla017401Watermelon (97103) v1cmowmB410
CmoCh01G003180Csa4G001850Cucumber (Chinese Long) v2cmocuB464
CmoCh01G003180MELO3C017949Melon (DHL92) v3.5.1cmomeB425
CmoCh01G003180ClCG10G011020Watermelon (Charleston Gray)cmowcgB385
CmoCh01G003180CSPI04G00910Wild cucumber (PI 183967)cmocpiB468
CmoCh01G003180Lsi03G010810Bottle gourd (USVL1VR-Ls)cmolsiB409
CmoCh01G003180Cp4.1LG12g05650Cucurbita pepo (Zucchini)cmocpeB425
CmoCh01G003180Cp4.1LG17g07170Cucurbita pepo (Zucchini)cmocpeB430
CmoCh01G003180Cp4.1LG02g16460Cucurbita pepo (Zucchini)cmocpeB449
CmoCh01G003180MELO3C017949.2Melon (DHL92) v3.6.1cmomedB489
CmoCh01G003180CsaV3_4G000870Cucumber (Chinese Long) v3cmocucB0554
CmoCh01G003180Cla97C10G193930Watermelon (97103) v2cmowmbB426
CmoCh01G003180Bhi11G001014Wax gourdcmowgoB0551
CmoCh01G003180CsGy4G000790Cucumber (Gy14) v2cgybcmoB487
CmoCh01G003180Carg11140Silver-seed gourdcarcmoB1105
CmoCh01G003180Carg07399Silver-seed gourdcarcmoB1033
CmoCh01G003180Carg07167Silver-seed gourdcarcmoB0153
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G003180CmoCh17G010560Cucurbita moschata (Rifu)cmocmoB299
CmoCh01G003180CmoCh08G004230Cucurbita moschata (Rifu)cmocmoB378
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G003180Cucurbita pepo (Zucchini)cmocpeB453
CmoCh01G003180Cucurbita moschata (Rifu)cmocmoB203
CmoCh01G003180Cucurbita maxima (Rimu)cmacmoB354
CmoCh01G003180Cucurbita maxima (Rimu)cmacmoB905
CmoCh01G003180Watermelon (Charleston Gray)cmowcgB375
CmoCh01G003180Watermelon (97103) v1cmowmB400