CmoCh01G002470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G002470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionStructural constituent of ribosome, putative
LocationCmo_Chr01 : 1116985 .. 1120027 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGTTATATTAGAAAGTTTTAAAATATTTTTTAAATAAAATAAAGAAGAAATATTATTGGGGATACTGTTCTTCGCGGTAAAACCAGTTGGCTCTATAATCAGACATAAACGTCGATTTCAAGTGCGAAGATGTGAATGGAGATCAATCAAAATATCTCCATTCCCCACTTGTTGAGCTTCCAAATAAATATCCTGCCCCCCCATTTCTCTTTCTCCATCACTCCAATGGCGCTTTCCGCGATCTCCCCGCTTCCACTGGCCGTTTCCTTAGGGTTCCACCGCCTTCATTGTCCGACCACGGTGGGTCGTCGCTTTTCCTACCCTCGTGCTTCTTTGAGCTCTTCGTCTTCCGAATCAAAATCAGCGAAAGCATCGTCGCCCAGTGATGGCGTTAGTTCCTCCAATGGAACTTCAACGCCCTTGGTTGAACCCTCCAGAGCTGCGGACTCGAATTTCAGTTACGCGTATGCTAACCCTAGTGGTGGTGGTGGTGCGTTTCTTCCGATTATTAGGTTTATGGGATCCGCTGAATCCTCAATTGAGAGGGTACGTGCTTCTCTCTCTCTCTCTCGTTGTTTTTTTTTTTTTTTTTCAATTGGATTTTCATGTTCTACCCCTGTTGAAGCTGAAAGTTTGTTCTGGCTATGAATTAAATACATAAACACTTTGAAACTGACCTCGTACACTGATTAATAATTGAGAGTTCGGCCGTGGAAGTAGATGCATATGAAAATTTTATGTTGTCACATTTCAAGCACTATAGAAGCTGGATGGCCCGGTGCCAGAAAAGATACCCATTTAGGATGATTTCAGATATTATTTTTAATTTTTTTAAAATCTCGAGTTTGATTCCTTATATTATATTTGTTTTTTGTAATTATTATTCTTTTTAAAGTCTGATCTTTCAATTCTTTAATGGGTTAATGACTGTACCTGTCTCACCTGATGTTAAGCAGGTTATTTTTGACTTCCGTTTCTTGGCACTGCTTGCTGTTGGAGGTTCACTGGCTGGTTCACTCTTGTGCTTTCTCAATGTACTTTCTCCAGCTCTCCTTTAAATCTAATTTTCCCGAGAAATCACCATAAAAGTCGTTGGATGCTACACAAAAGTAAAAATTGCTTCACTATGTAGTTGAATTCCTTTTGCATGATGTTTTGGATATATTTTGAAGATAGATTGTAATGAACTGGCTTCTTAAACAATTGTCTAGGGTTGTTACTTCTGGCATGTTAAAGTTAAAGATCAAAAACTTTGAAAAACCAATATTAAGAGGATTGATAAATAGTATAGCTTTGTTTACTAATAATCTTGAGTTTTTCTTTTTGGAGATATCATTGAAAACTCATAAATAACCACTTAAAAAATCTTTAAGAGGAAGTAAATCAATTTTTAAAAAGGATCTACAACATGATTACACCAAGGCTTGCTATTAAAGGTGACATAATGTAGAAATTTATGCTAACAAGGACCATTGGCTCAATCAATATACGACCCATCACTTGTCTCATACGTCTTTGTCGGTGACTGAAACAAAGTGTTGGAAAATGTTAGGTATTAAAAGTACTCAATAAGTAATCCTTCCAATGTGGTTAGACATGTGTACACACAACATGAACATGTGACATGCACTTATGGGAGTGAAATTTTTACTGTCGGAACATGTCAATGTCATTTTCTATGGTGAATGTGGATCAATATTTCATCTAAGATAAACTCTGTTTCTGTCTGGAAGAATCTATGTTTTTGAGTACTGTTCAAAATTTTACGTGTAGTTTGACTACTCTCAGTTTGTCTGAAGGGCTGCGTTTATATTTGTGATGCATATAAAGTTTACTGGTCAAGCTGTGTCAAAGGTATCCATACTGGACAGATGGTTCTGCGACTAGTTGAAGCTATCGGTAGGATCCTCGGATACTCCCTACTATATCTCTTATTTATGCTGGAAGTATAGAGCTGCTAACTGCATTTAAAGCATGACTTTTTGCTTTCCTTTTTGTTTTAGTTTTCATTGTCGCTGTCACTTGCAAAAAATGAACCCACAGGCCATAAATACTGTGAATCTTTTCTTTTGTTCGTAAACAATAATGAATTATTACCCGATGCAGATGTGTATCTTGCTGGAACCGTCATGTTAATCTTTGGGATGGGTCTATACGGTTTGTTTATCAGCAATGTGTCTCCTGATGAACTTCCTCCTGTTGATCGTGCCCTGAAAGGGTCCTCACTGTTTGGAATGTTTGCCTTGAAGGTAAATTAAAGACATTATTTTTAAGAAAATCAAGAATATCCTTCAAGAAATCAAGAATGTTTGCCTTGAAGGTAATTTTGGTGGTTGTTGGTTGCAGGAGAGGCCAAAATGGATGAAAATTAGCTCTCTTGATGAGTTGAAAACAAAAGTGGGACATGTTATTGTGATGATTCTTTTAGTAAAAATGTTCGAGAGAAGCAAGATGGTAACGATAGCCACCGGTCTTGATCTACTGAGTTATTCGGTCTGCATTTTTCTGTCATCTGCTTCTTTATACATCCTCCATAATCTACACAGGCCAGAATAGGAATGCAAAGTCAAGATATGCCAGGGAAGAGCATATTATTGCCTTCATAAATCCCCTAAATGAAATTTACCATATGAGCCATATATATTTGTTTGGTTTTGGTTGCTCTTCTTTCCTGTAATGTCTGTTTAAGTGCTGAATTCATTGTTTTCTGTCAAAAAATTTCTAGTAGCAGAAAATATTGCAGTTTCCTTTAGGGATAATTGCAGTGTGTATATTATATTGTAGTAAAATGCTAATGTGTATATATTTTCAGAGGTATAAACAAGACTGCTTATTATACTCATGGTTTAATCATTTGTTAAGTGAACTCCTTGTTGACAGCTGAACAGAAGATGTGTTTTTGTAGTTGTGTTGAATCACAAAATGAAGTTTGTCAAAGAAACAATGTTGTGTGTTGTATACCATGGAGGTGATACAAAGTCATTAAGAACTTTAATGGCTTTGTTCTTCTTTGT

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGTTATATTAGAAAGTTTTAAAATATTTTTTAAATAAAATAAAGAAGAAATATTATTGGGGATACTGTTCTTCGCGGTAAAACCAGTTGGCTCTATAATCAGACATAAACGTCGATTTCAAGTGCGAAGATGTGAATGGAGATCAATCAAAATATCTCCATTCCCCACTTGTTGAGCTTCCAAATAAATATCCTGCCCCCCCATTTCTCTTTCTCCATCACTCCAATGGCGCTTTCCGCGATCTCCCCGCTTCCACTGGCCGTTTCCTTAGGGTTCCACCGCCTTCATTGTCCGACCACGGTGGGTCGTCGCTTTTCCTACCCTCGTGCTTCTTTGAGCTCTTCGTCTTCCGAATCAAAATCAGCGAAAGCATCGTCGCCCAGTGATGGCGTTAGTTCCTCCAATGGAACTTCAACGCCCTTGGTTGAACCCTCCAGAGCTGCGGACTCGAATTTCAGTTACGCGTATGCTAACCCTAGTGGTGGTGGTGGTGCGTTTCTTCCGATTATTAGGTTTATGGGATCCGCTGAATCCTCAATTGAGAGGGTTATTTTTGACTTCCGTTTCTTGGCACTGCTTGCTGTTGGAGGTTCACTGGCTGGTTCACTCTTGTGCTTTCTCAATGGCTGCGTTTATATTTGTGATGCATATAAAGTTTACTGGTCAAGCTGTGTCAAAGGTATCCATACTGGACAGATGGTTCTGCGACTAGTTGAAGCTATCGATGTGTATCTTGCTGGAACCGTCATGTTAATCTTTGGGATGGGTCTATACGGTTTGTTTATCAGCAATGTGTCTCCTGATGAACTTCCTCCTGTTGATCGTGCCCTGAAAGGGTCCTCACTGTTTGGAATGTTTGCCTTGAAGGAGAGGCCAAAATGGATGAAAATTAGCTCTCTTGATGAGTTGAAAACAAAAGTGGGACATGTTATTGTGATGATTCTTTTAGTAAAAATGTTCGAGAGAAGCAAGATGGTAACGATAGCCACCGGTCTTGATCTACTGAGTTATTCGGTCTGCATTTTTCTGTCATCTGCTTCTTTATACATCCTCCATAATCTACACAGGCCAGAATAGGAATGCAAAGTCAAGATATGCCAGGGAAGAGCATATTATTGCCTTCATAAATCCCCTAAATGAAATTTACCATATGAGCCATATATATTTGTTTGGTTTTGGTTGCTCTTCTTTCCTGTAATGTCTGTTTAAGTGCTGAATTCATTGTTTTCTGTCAAAAAATTTCTAGTAGCAGAAAATATTGCAGTTTCCTTTAGGGATAATTGCAGTGTGTATATTATATTGTAGTAAAATGCTAATGTGTATATATTTTCAGAGGTATAAACAAGACTGCTTATTATACTCATGGTTTAATCATTTGTTAAGTGAACTCCTTGTTGACAGCTGAACAGAAGATGTGTTTTTGTAGTTGTGTTGAATCACAAAATGAAGTTTGTCAAAGAAACAATGTTGTGTGTTGTATACCATGGAGGTGATACAAAGTCATTAAGAACTTTAATGGCTTTGTTCTTCTTTGT

Coding sequence (CDS)

ATGGAGATCAATCAAAATATCTCCATTCCCCACTTGTTGAGCTTCCAAATAAATATCCTGCCCCCCCATTTCTCTTTCTCCATCACTCCAATGGCGCTTTCCGCGATCTCCCCGCTTCCACTGGCCGTTTCCTTAGGGTTCCACCGCCTTCATTGTCCGACCACGGTGGGTCGTCGCTTTTCCTACCCTCGTGCTTCTTTGAGCTCTTCGTCTTCCGAATCAAAATCAGCGAAAGCATCGTCGCCCAGTGATGGCGTTAGTTCCTCCAATGGAACTTCAACGCCCTTGGTTGAACCCTCCAGAGCTGCGGACTCGAATTTCAGTTACGCGTATGCTAACCCTAGTGGTGGTGGTGGTGCGTTTCTTCCGATTATTAGGTTTATGGGATCCGCTGAATCCTCAATTGAGAGGGTTATTTTTGACTTCCGTTTCTTGGCACTGCTTGCTGTTGGAGGTTCACTGGCTGGTTCACTCTTGTGCTTTCTCAATGGCTGCGTTTATATTTGTGATGCATATAAAGTTTACTGGTCAAGCTGTGTCAAAGGTATCCATACTGGACAGATGGTTCTGCGACTAGTTGAAGCTATCGATGTGTATCTTGCTGGAACCGTCATGTTAATCTTTGGGATGGGTCTATACGGTTTGTTTATCAGCAATGTGTCTCCTGATGAACTTCCTCCTGTTGATCGTGCCCTGAAAGGGTCCTCACTGTTTGGAATGTTTGCCTTGAAGGAGAGGCCAAAATGGATGAAAATTAGCTCTCTTGATGAGTTGAAAACAAAAGTGGGACATGTTATTGTGATGATTCTTTTAGTAAAAATGTTCGAGAGAAGCAAGATGGTAACGATAGCCACCGGTCTTGATCTACTGAGTTATTCGGTCTGCATTTTTCTGTCATCTGCTTCTTTATACATCCTCCATAATCTACACAGGCCAGAATAG
Homology
[Close]
BLAST of CmoCh01G002470 vs. TrEMBL
Match: A0A0A0LCC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G687750 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 6.7e-116
Identity = 238/289 (82.35%), Postives = 250/289 (86.51%), Query Frame = 1 

Query: 31  MALSAISPLPLAVSLGFHRLHCPTTVGRRFSYP-RASLSSSSSESKSAKASSPSDG-VSS 90
           MA SA SPLP  +SLGF R   PTT   R  +P  +SLSSSSSESKSAK+SSP+D  VSS
Sbjct: 1   MAFSAFSPLPFPLSLGFRRPQSPTTAFPRLPFPISSSLSSSSSESKSAKSSSPTDNLVSS 60

Query: 91  SNGTSTP---LVEPSRAADSNFSYAYANPSGGGGAFL-PIIRFMGSAESSIERVIFDFRF 150
           SNGT+ P    V+PS    SNF+YA+ NP+    A L PI+ FM SAESSIERVIFDFRF
Sbjct: 61  SNGTTPPSPSFVDPSTPPHSNFTYAFPNPTPPASASLHPILGFMQSAESSIERVIFDFRF 120

Query: 151 LALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 210
           LAL AVGGSLAGS LCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV
Sbjct: 121 LALFAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 180

Query: 211 MLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGH 270
           MLIFGMGLYGLFISNVSPDE P VDRAL+GSSLFGMFALKERPKWMKISSLDELKTKVGH
Sbjct: 181 MLIFGMGLYGLFISNVSPDEPPSVDRALQGSSLFGMFALKERPKWMKISSLDELKTKVGH 240

Query: 271 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE
Sbjct: 241 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 289

[Close]
BLAST of CmoCh01G002470 vs. TrEMBL
Match: A0A067L571_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16864 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 6.1e-101
Identity = 215/285 (75.44%), Postives = 233/285 (81.75%), Query Frame = 1 

Query: 31  MAL-SAISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSES-KSAKASSPSDGVSS 90
           MAL S+I   PL++S    +   P  + RR  +P A+LSSSS  S +SA A   +  + S
Sbjct: 1   MALFSSILTSPLSISTPIRQ---PIKIKRRLLFPLATLSSSSPSSPESAAAPVTTRPLDS 60

Query: 91  SNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLALL 150
           S   ST  VE SR  DS+F+YA ANP+G      P +RF+ S ES+IERVIFDFRFLALL
Sbjct: 61  SKTPSTTFVESSRTHDSSFNYALANPTGNN----PFVRFVRSTESNIERVIFDFRFLALL 120

Query: 151 AVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 210
           A+GGSLAGSLLCFLNGCVYI DAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF
Sbjct: 121 AIGGSLAGSLLCFLNGCVYIFDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 180

Query: 211 GMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 270
           GMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM
Sbjct: 181 GMGLYGLFISNVPPDVSPQVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 240

Query: 271 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           ILLVKMFERSKMVTIATG DLLSYSVCIFLSSASLYILHNLH+ E
Sbjct: 241 ILLVKMFERSKMVTIATGTDLLSYSVCIFLSSASLYILHNLHKSE 278

[Close]
BLAST of CmoCh01G002470 vs. TrEMBL
Match: I3SM88_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 8.8e-100
Identity = 215/292 (73.63%), Postives = 236/292 (80.82%), Query Frame = 1 

Query: 31  MALSA---ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKASSPSDGVS 90
           MALS    IS  P ++SL  HR   P+ + RR  YP ASLSSSS ES +A +SSP  G S
Sbjct: 1   MALSCYTFISASPPSLSLQSHR---PSHLPRRVFYPSASLSSSSPES-TASSSSPQSGPS 60

Query: 91  SSNGT------STPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFD 150
           +S  T      STP VE SR  D  F+YAYAN +G      PI+R + + ESSIER+IFD
Sbjct: 61  ASTSTTTTKASSTPFVE-SRPPDPAFNYAYANTNGS-----PIVRMVRATESSIERIIFD 120

Query: 151 FRFLALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLA 210
           FRFLALLAVGGSLAGSLLCFLNGC+YI DAYKVYW+ CVKG+H+G+MVLRLVEAIDVYLA
Sbjct: 121 FRFLALLAVGGSLAGSLLCFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLA 180

Query: 211 GTVMLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 270
           GTVMLIFGMGLYGLFISN  PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTK
Sbjct: 181 GTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 240

Query: 271 VGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCIFLSSASLYILHNLH+ +
Sbjct: 241 VGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLSSASLYILHNLHKTD 282

[Close]
BLAST of CmoCh01G002470 vs. TrEMBL
Match: B9RVJ9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0963860 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.6e-99
Identity = 208/288 (72.22%), Postives = 233/288 (80.90%), Query Frame = 1 

Query: 31  MALSA-ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKA----SSPSDG 90
           MALSA I   PL++S    R   P T+ RR   P A+LSSSS  S    A    ++ +  
Sbjct: 1   MALSASIFTSPLSISSTPIRYR-PITISRRLLCPFATLSSSSPSSSHEPAAPAPATTTSP 60

Query: 91  VSSSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFL 150
           + SS   S P  E SR+ +S+F+YA+ANPSG      P+++F+ S ES+IER+IFDFRFL
Sbjct: 61  IDSSKNPSKPFAESSRSHNSSFNYAFANPSGSS----PVVQFVRSTESNIERIIFDFRFL 120

Query: 151 ALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVM 210
           ALLAVGGSLAGSLLCFLNGCVYI DAYKVYW+SC KG+HTGQMVLRLVEAIDVYLAGTVM
Sbjct: 121 ALLAVGGSLAGSLLCFLNGCVYIVDAYKVYWTSCCKGVHTGQMVLRLVEAIDVYLAGTVM 180

Query: 211 LIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHV 270
           LIFGMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKI SLDELKTKVGHV
Sbjct: 181 LIFGMGLYGLFISNVPPDVAPQVDRALKGSSLFGMFALKERPKWMKICSLDELKTKVGHV 240

Query: 271 IVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           IVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSSASLYILHNLH+ +
Sbjct: 241 IVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHNLHKSD 283

[Close]
BLAST of CmoCh01G002470 vs. TrEMBL
Match: D7T379_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00200 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 3.3e-99
Identity = 215/286 (75.17%), Postives = 235/286 (82.17%), Query Frame = 1 

Query: 31  MAL-SAISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKA--SSPSDGVS 90
           MAL +A+S  PL++SL   R   P T  RRFS   AS+SSSS ES       S P++ + 
Sbjct: 1   MALFAAMSYTPLSLSLSRLR---PPTNHRRFSPCLASVSSSSHESSPPPPPPSPPTETIL 60

Query: 91  SSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLAL 150
           SSN  S PLVE SR  +S ++YA  +P        PI+RF+  +ESSIERVIFDFRFLAL
Sbjct: 61  SSNPPSKPLVESSRPLNSTYNYALPDPKAS-----PIVRFVRYSESSIERVIFDFRFLAL 120

Query: 151 LAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLI 210
           LAVGGSLAGSLLCFLNGCVYI DAYKVYW+SCVKGIHTG+MVLRLVEAIDVYLAGTVMLI
Sbjct: 121 LAVGGSLAGSLLCFLNGCVYIVDAYKVYWTSCVKGIHTGKMVLRLVEAIDVYLAGTVMLI 180

Query: 211 FGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIV 270
           FGMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIV
Sbjct: 181 FGMGLYGLFISNVPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIV 240

Query: 271 MILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           MILLVKMFERSKMVTIATG+DLLSYSVCIFLSSASLYIL+NLH+ E
Sbjct: 241 MILLVKMFERSKMVTIATGMDLLSYSVCIFLSSASLYILNNLHKAE 278

[Close]
BLAST of CmoCh01G002470 vs. TAIR10
Match: AT5G13720.1 (AT5G13720.1 Uncharacterised protein family (UPF0114))

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-88
Identity = 197/285 (69.12%), Postives = 220/285 (77.19%), Query Frame = 1 

Query: 31  MALSA-ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKASSPSDGVSSS 90
           MALS+ IS  PL++S+  + L  PT   RRF  P A+L SS  ES SA +S P+      
Sbjct: 1   MALSSLISATPLSLSVPRY-LVLPTR--RRFHLPLATLDSSPPES-SASSSIPTS--IPV 60

Query: 91  NGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLALLA 150
           NG + P    +R  DS                 P  +F  S ES++ER+IFDFRFLALLA
Sbjct: 61  NGNTLPSSYGTRKDDS-----------------PFAQFFRSTESNVERIIFDFRFLALLA 120

Query: 151 VGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIFG 210
           VGGSLAGSLLCFLNGCVYI +AYKVYW++C KGIHTGQMVLRLVEAIDVYLAGTVMLIF 
Sbjct: 121 VGGSLAGSLLCFLNGCVYIVEAYKVYWTNCSKGIHTGQMVLRLVEAIDVYLAGTVMLIFS 180

Query: 211 MGLYGLFISNVSPDELPP-VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 270
           MGLYGLFIS+ SP ++PP  DRAL+ SSLFGMFA+KERPKWMKISSLDELKTKVGHVIVM
Sbjct: 181 MGLYGLFISH-SPHDVPPESDRALRSSSLFGMFAMKERPKWMKISSLDELKTKVGHVIVM 240

Query: 271 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLH+ E
Sbjct: 241 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHKGE 261

[Close]
BLAST of CmoCh01G002470 vs. TAIR10
Match: AT4G19390.1 (AT4G19390.1 Uncharacterised protein family (UPF0114))

HSP 1 Score: 169.5 bits (428), Expect = 3.3e-42
Identity = 103/239 (43.10%), Postives = 146/239 (61.09%), Query Frame = 1 

Query: 72  SESKSAKASSPSDGVSSSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSA 131
           S  +  K  S +    +S+  S     P R A ++ S + +  +          RF  + 
Sbjct: 39  SSFRGLKLPSRTTKTITSSDWSWSYRSPGRLASASTSTSASTSTSAAVTSNSTNRFE-AL 98

Query: 132 ESSIERVIFDFRFLALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLR 191
           E  IE+VI+  RF+  L   GSL GS+LCF+ GC+Y+ D++  Y       ++ G+++  
Sbjct: 99  EEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------SVNRGKVIFL 158

Query: 192 LVEAIDVYLAGTVMLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMK 251
           LVEAID+YL GTVML+FG+GLY LFISN+   E    D     SSLFGMF LKERP+W++
Sbjct: 159 LVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLKERPQWLE 218

Query: 252 ISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLH 311
           + S+ ELKTK+GHVIVM+LL+ +F++SK V I +  DLL  SV IF SSA L++L  L+
Sbjct: 219 VKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSACLFLLSRLN 270

[Close]
BLAST of CmoCh01G002470 vs. NCBI nr
Match: gi|659123749|ref|XP_008461820.1| (PREDICTED: uncharacterized protein LOC103500330 [Cucumis melo])

HSP 1 Score: 434.9 bits (1117), Expect = 1.2e-118
Identity = 244/287 (85.02%), Postives = 251/287 (87.46%), Query Frame = 1 

Query: 31  MALSAISPLPLAVSLGFHRLHCPTTVGRRFSYP-RASLSSSSSESKSAKASSPSDG-VSS 90
           MA SA SPLP  VSLGF R   PTT   R S+P  ASLSSSSSESKSAK+SSP+D  VSS
Sbjct: 1   MAFSAFSPLPFPVSLGFRRPQSPTTAFPRLSFPVSASLSSSSSESKSAKSSSPTDNLVSS 60

Query: 91  SNGTSTP-LVEPSRAADSNFSYAYANPSGGGGAFL-PIIRFMGSAESSIERVIFDFRFLA 150
           SNGT+ P  VEPS   DSNF YA+ NP+    A L PI+ FM S ESSIERVIFDFRFLA
Sbjct: 61  SNGTTPPSFVEPSTPPDSNFPYAFPNPTPAASASLHPILGFMQSTESSIERVIFDFRFLA 120

Query: 151 LLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVML 210
           LLAVGGSLAGS LCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVML
Sbjct: 121 LLAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVML 180

Query: 211 IFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVI 270
           IFGMGLYGLFISNVSPDE P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVI
Sbjct: 181 IFGMGLYGLFISNVSPDEPPLVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVI 240

Query: 271 VMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE
Sbjct: 241 VMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 287

[Close]
BLAST of CmoCh01G002470 vs. NCBI nr
Match: gi|778682741|ref|XP_011651765.1| (PREDICTED: uncharacterized protein LOC101217857 [Cucumis sativus])

HSP 1 Score: 425.2 bits (1092), Expect = 9.6e-116
Identity = 238/289 (82.35%), Postives = 250/289 (86.51%), Query Frame = 1 

Query: 31  MALSAISPLPLAVSLGFHRLHCPTTVGRRFSYP-RASLSSSSSESKSAKASSPSDG-VSS 90
           MA SA SPLP  +SLGF R   PTT   R  +P  +SLSSSSSESKSAK+SSP+D  VSS
Sbjct: 1   MAFSAFSPLPFPLSLGFRRPQSPTTAFPRLPFPISSSLSSSSSESKSAKSSSPTDNLVSS 60

Query: 91  SNGTSTP---LVEPSRAADSNFSYAYANPSGGGGAFL-PIIRFMGSAESSIERVIFDFRF 150
           SNGT+ P    V+PS    SNF+YA+ NP+    A L PI+ FM SAESSIERVIFDFRF
Sbjct: 61  SNGTTPPSPSFVDPSTPPHSNFTYAFPNPTPPASASLHPILGFMQSAESSIERVIFDFRF 120

Query: 151 LALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 210
           LAL AVGGSLAGS LCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV
Sbjct: 121 LALFAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 180

Query: 211 MLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGH 270
           MLIFGMGLYGLFISNVSPDE P VDRAL+GSSLFGMFALKERPKWMKISSLDELKTKVGH
Sbjct: 181 MLIFGMGLYGLFISNVSPDEPPSVDRALQGSSLFGMFALKERPKWMKISSLDELKTKVGH 240

Query: 271 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE
Sbjct: 241 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 289

[Close]
BLAST of CmoCh01G002470 vs. NCBI nr
Match: gi|802555766|ref|XP_012065612.1| (PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas])

HSP 1 Score: 375.6 bits (963), Expect = 8.7e-101
Identity = 215/285 (75.44%), Postives = 233/285 (81.75%), Query Frame = 1 

Query: 31  MAL-SAISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSES-KSAKASSPSDGVSS 90
           MAL S+I   PL++S    +   P  + RR  +P A+LSSSS  S +SA A   +  + S
Sbjct: 1   MALFSSILTSPLSISTPIRQ---PIKIKRRLLFPLATLSSSSPSSPESAAAPVTTRPLDS 60

Query: 91  SNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLALL 150
           S   ST  VE SR  DS+F+YA ANP+G      P +RF+ S ES+IERVIFDFRFLALL
Sbjct: 61  SKTPSTTFVESSRTHDSSFNYALANPTGNN----PFVRFVRSTESNIERVIFDFRFLALL 120

Query: 151 AVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 210
           A+GGSLAGSLLCFLNGCVYI DAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF
Sbjct: 121 AIGGSLAGSLLCFLNGCVYIFDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 180

Query: 211 GMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 270
           GMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM
Sbjct: 181 GMGLYGLFISNVPPDVSPQVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 240

Query: 271 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           ILLVKMFERSKMVTIATG DLLSYSVCIFLSSASLYILHNLH+ E
Sbjct: 241 ILLVKMFERSKMVTIATGTDLLSYSVCIFLSSASLYILHNLHKSE 278

[Close]
BLAST of CmoCh01G002470 vs. NCBI nr
Match: gi|388506628|gb|AFK41380.1| (unknown [Lotus japonicus])

HSP 1 Score: 371.7 bits (953), Expect = 1.3e-99
Identity = 215/292 (73.63%), Postives = 236/292 (80.82%), Query Frame = 1 

Query: 31  MALSA---ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKASSPSDGVS 90
           MALS    IS  P ++SL  HR   P+ + RR  YP ASLSSSS ES +A +SSP  G S
Sbjct: 1   MALSCYTFISASPPSLSLQSHR---PSHLPRRVFYPSASLSSSSPES-TASSSSPQSGPS 60

Query: 91  SSNGT------STPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFD 150
           +S  T      STP VE SR  D  F+YAYAN +G      PI+R + + ESSIER+IFD
Sbjct: 61  ASTSTTTTKASSTPFVE-SRPPDPAFNYAYANTNGS-----PIVRMVRATESSIERIIFD 120

Query: 151 FRFLALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLA 210
           FRFLALLAVGGSLAGSLLCFLNGC+YI DAYKVYW+ CVKG+H+G+MVLRLVEAIDVYLA
Sbjct: 121 FRFLALLAVGGSLAGSLLCFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLA 180

Query: 211 GTVMLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 270
           GTVMLIFGMGLYGLFISN  PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTK
Sbjct: 181 GTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 240

Query: 271 VGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCIFLSSASLYILHNLH+ +
Sbjct: 241 VGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLSSASLYILHNLHKTD 282

[Close]
BLAST of CmoCh01G002470 vs. NCBI nr
Match: gi|255553454|ref|XP_002517768.1| (PREDICTED: uncharacterized protein LOC8259271 [Ricinus communis])

HSP 1 Score: 370.2 bits (949), Expect = 3.7e-99
Identity = 208/288 (72.22%), Postives = 233/288 (80.90%), Query Frame = 1 

Query: 31  MALSA-ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKA----SSPSDG 90
           MALSA I   PL++S    R   P T+ RR   P A+LSSSS  S    A    ++ +  
Sbjct: 1   MALSASIFTSPLSISSTPIRYR-PITISRRLLCPFATLSSSSPSSSHEPAAPAPATTTSP 60

Query: 91  VSSSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFL 150
           + SS   S P  E SR+ +S+F+YA+ANPSG      P+++F+ S ES+IER+IFDFRFL
Sbjct: 61  IDSSKNPSKPFAESSRSHNSSFNYAFANPSGSS----PVVQFVRSTESNIERIIFDFRFL 120

Query: 151 ALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVM 210
           ALLAVGGSLAGSLLCFLNGCVYI DAYKVYW+SC KG+HTGQMVLRLVEAIDVYLAGTVM
Sbjct: 121 ALLAVGGSLAGSLLCFLNGCVYIVDAYKVYWTSCCKGVHTGQMVLRLVEAIDVYLAGTVM 180

Query: 211 LIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHV 270
           LIFGMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKI SLDELKTKVGHV
Sbjct: 181 LIFGMGLYGLFISNVPPDVAPQVDRALKGSSLFGMFALKERPKWMKICSLDELKTKVGHV 240

Query: 271 IVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           IVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSSASLYILHNLH+ +
Sbjct: 241 IVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHNLHKSD 283

The following BLAST results are available for this feature:
BLAST of CmoCh01G002470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G002470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCC7_CUCSA6.7e-11682.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G687750 PE=4 SV=1[more]
A0A067L571_JATCU6.1e-10175.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16864 PE=4 SV=1[more]
I3SM88_LOTJA8.8e-10073.63Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
B9RVJ9_RICCO2.6e-9972.22Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0963860 PE=4 SV=1[more]
D7T379_VITVI3.3e-9975.17Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00200 PE=4 SV=... [more]
BLAST of CmoCh01G002470 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G13720.12.4e-8869.12 Uncharacterised protein family (UPF0114)[more]
AT4G19390.13.3e-4243.10 Uncharacterised protein family (UPF0114)[more]
BLAST of CmoCh01G002470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123749|ref|XP_008461820.1|1.2e-11885.02PREDICTED: uncharacterized protein LOC103500330 [Cucumis melo][more]
gi|778682741|ref|XP_011651765.1|9.6e-11682.35PREDICTED: uncharacterized protein LOC101217857 [Cucumis sativus][more]
gi|802555766|ref|XP_012065612.1|8.7e-10175.44PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas][more]
gi|388506628|gb|AFK41380.1|1.3e-9973.63unknown [Lotus japonicus][more]
gi|255553454|ref|XP_002517768.1|3.7e-9972.22PREDICTED: uncharacterized protein LOC8259271 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005134UPF0114
IPR016804UPF0114_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G002470.1CmoCh01G002470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005134Uncharacterised protein family UPF0114PFAMPF03350UPF0114coord: 139..277
score: 2.5
IPR016804Uncharacterised protein family UPF0114, plantPIRPIRSF022348UCP022348coord: 27..313
score: 3.3E
NoneNo IPR availablePANTHERPTHR31721FAMILY NOT NAMEDcoord: 58..313
score: 5.5E
NoneNo IPR availablePANTHERPTHR31721:SF1SUBFAMILY NOT NAMEDcoord: 58..313
score: 5.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G002470Cucsa.248930Cucumber (Gy14) v1cgycmoB0693
CmoCh01G002470CmaCh14G009870Cucurbita maxima (Rimu)cmacmoB257
CmoCh01G002470CmaCh01G002380Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G002470Cla017284Watermelon (97103) v1cmowmB410
CmoCh01G002470Csa3G687750Cucumber (Chinese Long) v2cmocuB440
CmoCh01G002470MELO3C023994Melon (DHL92) v3.5.1cmomeB416
CmoCh01G002470ClCG10G012200Watermelon (Charleston Gray)cmowcgB385
CmoCh01G002470CSPI03G29530Wild cucumber (PI 183967)cmocpiB444
CmoCh01G002470Lsi03G011950Bottle gourd (USVL1VR-Ls)cmolsiB409
CmoCh01G002470Cp4.1LG02g15590Cucurbita pepo (Zucchini)cmocpeB449
CmoCh01G002470Cp4.1LG03g04630Cucurbita pepo (Zucchini)cmocpeB453
CmoCh01G002470MELO3C023994.2Melon (DHL92) v3.6.1cmomedB476
CmoCh01G002470CsaV3_3G031980Cucumber (Chinese Long) v3cmocucB0530
CmoCh01G002470Cla97C10G195020Watermelon (97103) v2cmowmbB426
CmoCh01G002470Bhi11G001163Wax gourdcmowgoB0551
CmoCh01G002470CsGy3G027370Cucumber (Gy14) v2cgybcmoB337
CmoCh01G002470Carg11210Silver-seed gourdcarcmoB1105
CmoCh01G002470Carg07333Silver-seed gourdcarcmoB1033
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G002470CmoCh14G010100Cucurbita moschata (Rifu)cmocmoB203
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G002470Cucurbita pepo (Zucchini)cmocpeB425
CmoCh01G002470Cucurbita pepo (Zucchini)cmocpeB430
CmoCh01G002470Bottle gourd (USVL1VR-Ls)cmolsiB404
CmoCh01G002470Cucumber (Gy14) v2cgybcmoB921
CmoCh01G002470Melon (DHL92) v3.6.1cmomedB449
CmoCh01G002470Silver-seed gourdcarcmoB0609
CmoCh01G002470Cucumber (Chinese Long) v3cmocucB0582
CmoCh01G002470Watermelon (97103) v2cmowmbB493
CmoCh01G002470Cucurbita moschata (Rifu)cmocmoB299
CmoCh01G002470Cucurbita moschata (Rifu)cmocmoB378
CmoCh01G002470Cucumber (Gy14) v1cgycmoB0341
CmoCh01G002470Cucurbita maxima (Rimu)cmacmoB354
CmoCh01G002470Cucurbita maxima (Rimu)cmacmoB905
CmoCh01G002470Wild cucumber (PI 183967)cmocpiB492
CmoCh01G002470Cucumber (Chinese Long) v2cmocuB485
CmoCh01G002470Melon (DHL92) v3.5.1cmomeB395
CmoCh01G002470Watermelon (Charleston Gray)cmowcgB375
CmoCh01G002470Watermelon (97103) v1cmowmB400