CmoCh01G002470.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G002470.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Structural constituent of ribosome, putative
Location	Cmo_Chr01 : 1116985 .. 1120027 (+)
Sequence length	1564

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGTTATATTAGAAAGTTTTAAAATATTTTTTAAATAAAATAAAGAAGAAATATTATTGGGGATACTGTTCTTCGCGGTAAAACCAGTTGGCTCTATAATCAGACATAAACGTCGATTTCAAGTGCGAAGATGTGAATGGAGATCAATCAAAATATCTCCATTCCCCACTTGTTGAGCTTCCAAATAAATATCCTGCCCCCCCATTTCTCTTTCTCCATCACTCCAATGGCGCTTTCCGCGATCTCCCCGCTTCCACTGGCCGTTTCCTTAGGGTTCCACCGCCTTCATTGTCCGACCACGGTGGGTCGTCGCTTTTCCTACCCTCGTGCTTCTTTGAGCTCTTCGTCTTCCGAATCAAAATCAGCGAAAGCATCGTCGCCCAGTGATGGCGTTAGTTCCTCCAATGGAACTTCAACGCCCTTGGTTGAACCCTCCAGAGCTGCGGACTCGAATTTCAGTTACGCGTATGCTAACCCTAGTGGTGGTGGTGGTGCGTTTCTTCCGATTATTAGGTTTATGGGATCCGCTGAATCCTCAATTGAGAGGGTACGTGCTTCTCTCTCTCTCTCTCGTTGTTTTTTTTTTTTTTTTTCAATTGGATTTTCATGTTCTACCCCTGTTGAAGCTGAAAGTTTGTTCTGGCTATGAATTAAATACATAAACACTTTGAAACTGACCTCGTACACTGATTAATAATTGAGAGTTCGGCCGTGGAAGTAGATGCATATGAAAATTTTATGTTGTCACATTTCAAGCACTATAGAAGCTGGATGGCCCGGTGCCAGAAAAGATACCCATTTAGGATGATTTCAGATATTATTTTTAATTTTTTTAAAATCTCGAGTTTGATTCCTTATATTATATTTGTTTTTTGTAATTATTATTCTTTTTAAAGTCTGATCTTTCAATTCTTTAATGGGTTAATGACTGTACCTGTCTCACCTGATGTTAAGCAGGTTATTTTTGACTTCCGTTTCTTGGCACTGCTTGCTGTTGGAGGTTCACTGGCTGGTTCACTCTTGTGCTTTCTCAATGTACTTTCTCCAGCTCTCCTTTAAATCTAATTTTCCCGAGAAATCACCATAAAAGTCGTTGGATGCTACACAAAAGTAAAAATTGCTTCACTATGTAGTTGAATTCCTTTTGCATGATGTTTTGGATATATTTTGAAGATAGATTGTAATGAACTGGCTTCTTAAACAATTGTCTAGGGTTGTTACTTCTGGCATGTTAAAGTTAAAGATCAAAAACTTTGAAAAACCAATATTAAGAGGATTGATAAATAGTATAGCTTTGTTTACTAATAATCTTGAGTTTTTCTTTTTGGAGATATCATTGAAAACTCATAAATAACCACTTAAAAAATCTTTAAGAGGAAGTAAATCAATTTTTAAAAAGGATCTACAACATGATTACACCAAGGCTTGCTATTAAAGGTGACATAATGTAGAAATTTATGCTAACAAGGACCATTGGCTCAATCAATATACGACCCATCACTTGTCTCATACGTCTTTGTCGGTGACTGAAACAAAGTGTTGGAAAATGTTAGGTATTAAAAGTACTCAATAAGTAATCCTTCCAATGTGGTTAGACATGTGTACACACAACATGAACATGTGACATGCACTTATGGGAGTGAAATTTTTACTGTCGGAACATGTCAATGTCATTTTCTATGGTGAATGTGGATCAATATTTCATCTAAGATAAACTCTGTTTCTGTCTGGAAGAATCTATGTTTTTGAGTACTGTTCAAAATTTTACGTGTAGTTTGACTACTCTCAGTTTGTCTGAAGGGCTGCGTTTATATTTGTGATGCATATAAAGTTTACTGGTCAAGCTGTGTCAAAGGTATCCATACTGGACAGATGGTTCTGCGACTAGTTGAAGCTATCGGTAGGATCCTCGGATACTCCCTACTATATCTCTTATTTATGCTGGAAGTATAGAGCTGCTAACTGCATTTAAAGCATGACTTTTTGCTTTCCTTTTTGTTTTAGTTTTCATTGTCGCTGTCACTTGCAAAAAATGAACCCACAGGCCATAAATACTGTGAATCTTTTCTTTTGTTCGTAAACAATAATGAATTATTACCCGATGCAGATGTGTATCTTGCTGGAACCGTCATGTTAATCTTTGGGATGGGTCTATACGGTTTGTTTATCAGCAATGTGTCTCCTGATGAACTTCCTCCTGTTGATCGTGCCCTGAAAGGGTCCTCACTGTTTGGAATGTTTGCCTTGAAGGTAAATTAAAGACATTATTTTTAAGAAAATCAAGAATATCCTTCAAGAAATCAAGAATGTTTGCCTTGAAGGTAATTTTGGTGGTTGTTGGTTGCAGGAGAGGCCAAAATGGATGAAAATTAGCTCTCTTGATGAGTTGAAAACAAAAGTGGGACATGTTATTGTGATGATTCTTTTAGTAAAAATGTTCGAGAGAAGCAAGATGGTAACGATAGCCACCGGTCTTGATCTACTGAGTTATTCGGTCTGCATTTTTCTGTCATCTGCTTCTTTATACATCCTCCATAATCTACACAGGCCAGAATAGGAATGCAAAGTCAAGATATGCCAGGGAAGAGCATATTATTGCCTTCATAAATCCCCTAAATGAAATTTACCATATGAGCCATATATATTTGTTTGGTTTTGGTTGCTCTTCTTTCCTGTAATGTCTGTTTAAGTGCTGAATTCATTGTTTTCTGTCAAAAAATTTCTAGTAGCAGAAAATATTGCAGTTTCCTTTAGGGATAATTGCAGTGTGTATATTATATTGTAGTAAAATGCTAATGTGTATATATTTTCAGAGGTATAAACAAGACTGCTTATTATACTCATGGTTTAATCATTTGTTAAGTGAACTCCTTGTTGACAGCTGAACAGAAGATGTGTTTTTGTAGTTGTGTTGAATCACAAAATGAAGTTTGTCAAAGAAACAATGTTGTGTGTTGTATACCATGGAGGTGATACAAAGTCATTAAGAACTTTAATGGCTTTGTTCTTCTTTGT

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGTTATATTAGAAAGTTTTAAAATATTTTTTAAATAAAATAAAGAAGAAATATTATTGGGGATACTGTTCTTCGCGGTAAAACCAGTTGGCTCTATAATCAGACATAAACGTCGATTTCAAGTGCGAAGATGTGAATGGAGATCAATCAAAATATCTCCATTCCCCACTTGTTGAGCTTCCAAATAAATATCCTGCCCCCCCATTTCTCTTTCTCCATCACTCCAATGGCGCTTTCCGCGATCTCCCCGCTTCCACTGGCCGTTTCCTTAGGGTTCCACCGCCTTCATTGTCCGACCACGGTGGGTCGTCGCTTTTCCTACCCTCGTGCTTCTTTGAGCTCTTCGTCTTCCGAATCAAAATCAGCGAAAGCATCGTCGCCCAGTGATGGCGTTAGTTCCTCCAATGGAACTTCAACGCCCTTGGTTGAACCCTCCAGAGCTGCGGACTCGAATTTCAGTTACGCGTATGCTAACCCTAGTGGTGGTGGTGGTGCGTTTCTTCCGATTATTAGGTTTATGGGATCCGCTGAATCCTCAATTGAGAGGGTTATTTTTGACTTCCGTTTCTTGGCACTGCTTGCTGTTGGAGGTTCACTGGCTGGTTCACTCTTGTGCTTTCTCAATGGCTGCGTTTATATTTGTGATGCATATAAAGTTTACTGGTCAAGCTGTGTCAAAGGTATCCATACTGGACAGATGGTTCTGCGACTAGTTGAAGCTATCGATGTGTATCTTGCTGGAACCGTCATGTTAATCTTTGGGATGGGTCTATACGGTTTGTTTATCAGCAATGTGTCTCCTGATGAACTTCCTCCTGTTGATCGTGCCCTGAAAGGGTCCTCACTGTTTGGAATGTTTGCCTTGAAGGAGAGGCCAAAATGGATGAAAATTAGCTCTCTTGATGAGTTGAAAACAAAAGTGGGACATGTTATTGTGATGATTCTTTTAGTAAAAATGTTCGAGAGAAGCAAGATGGTAACGATAGCCACCGGTCTTGATCTACTGAGTTATTCGGTCTGCATTTTTCTGTCATCTGCTTCTTTATACATCCTCCATAATCTACACAGGCCAGAATAGGAATGCAAAGTCAAGATATGCCAGGGAAGAGCATATTATTGCCTTCATAAATCCCCTAAATGAAATTTACCATATGAGCCATATATATTTGTTTGGTTTTGGTTGCTCTTCTTTCCTGTAATGTCTGTTTAAGTGCTGAATTCATTGTTTTCTGTCAAAAAATTTCTAGTAGCAGAAAATATTGCAGTTTCCTTTAGGGATAATTGCAGTGTGTATATTATATTGTAGTAAAATGCTAATGTGTATATATTTTCAGAGGTATAAACAAGACTGCTTATTATACTCATGGTTTAATCATTTGTTAAGTGAACTCCTTGTTGACAGCTGAACAGAAGATGTGTTTTTGTAGTTGTGTTGAATCACAAAATGAAGTTTGTCAAAGAAACAATGTTGTGTGTTGTATACCATGGAGGTGATACAAAGTCATTAAGAACTTTAATGGCTTTGTTCTTCTTTGT

Coding sequence (CDS)

ATGGAGATCAATCAAAATATCTCCATTCCCCACTTGTTGAGCTTCCAAATAAATATCCTGCCCCCCCATTTCTCTTTCTCCATCACTCCAATGGCGCTTTCCGCGATCTCCCCGCTTCCACTGGCCGTTTCCTTAGGGTTCCACCGCCTTCATTGTCCGACCACGGTGGGTCGTCGCTTTTCCTACCCTCGTGCTTCTTTGAGCTCTTCGTCTTCCGAATCAAAATCAGCGAAAGCATCGTCGCCCAGTGATGGCGTTAGTTCCTCCAATGGAACTTCAACGCCCTTGGTTGAACCCTCCAGAGCTGCGGACTCGAATTTCAGTTACGCGTATGCTAACCCTAGTGGTGGTGGTGGTGCGTTTCTTCCGATTATTAGGTTTATGGGATCCGCTGAATCCTCAATTGAGAGGGTTATTTTTGACTTCCGTTTCTTGGCACTGCTTGCTGTTGGAGGTTCACTGGCTGGTTCACTCTTGTGCTTTCTCAATGGCTGCGTTTATATTTGTGATGCATATAAAGTTTACTGGTCAAGCTGTGTCAAAGGTATCCATACTGGACAGATGGTTCTGCGACTAGTTGAAGCTATCGATGTGTATCTTGCTGGAACCGTCATGTTAATCTTTGGGATGGGTCTATACGGTTTGTTTATCAGCAATGTGTCTCCTGATGAACTTCCTCCTGTTGATCGTGCCCTGAAAGGGTCCTCACTGTTTGGAATGTTTGCCTTGAAGGAGAGGCCAAAATGGATGAAAATTAGCTCTCTTGATGAGTTGAAAACAAAAGTGGGACATGTTATTGTGATGATTCTTTTAGTAAAAATGTTCGAGAGAAGCAAGATGGTAACGATAGCCACCGGTCTTGATCTACTGAGTTATTCGGTCTGCATTTTTCTGTCATCTGCTTCTTTATACATCCTCCATAATCTACACAGGCCAGAATAG

Homology

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BLAST of CmoCh01G002470.1 vs. TrEMBL
Match: A0A0A0LCC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G687750 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 6.7e-116
Identity = 238/289 (82.35%), Postives = 250/289 (86.51%), Query Frame = 1


Query: 31  MALSAISPLPLAVSLGFHRLHCPTTVGRRFSYP-RASLSSSSSESKSAKASSPSDG-VSS 90
           MA SA SPLP  +SLGF R   PTT   R  +P  +SLSSSSSESKSAK+SSP+D  VSS
Sbjct: 1   MAFSAFSPLPFPLSLGFRRPQSPTTAFPRLPFPISSSLSSSSSESKSAKSSSPTDNLVSS 60

Query: 91  SNGTSTP---LVEPSRAADSNFSYAYANPSGGGGAFL-PIIRFMGSAESSIERVIFDFRF 150
           SNGT+ P    V+PS    SNF+YA+ NP+    A L PI+ FM SAESSIERVIFDFRF
Sbjct: 61  SNGTTPPSPSFVDPSTPPHSNFTYAFPNPTPPASASLHPILGFMQSAESSIERVIFDFRF 120

Query: 151 LALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 210
           LAL AVGGSLAGS LCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV
Sbjct: 121 LALFAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 180

Query: 211 MLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGH 270
           MLIFGMGLYGLFISNVSPDE P VDRAL+GSSLFGMFALKERPKWMKISSLDELKTKVGH
Sbjct: 181 MLIFGMGLYGLFISNVSPDEPPSVDRALQGSSLFGMFALKERPKWMKISSLDELKTKVGH 240

Query: 271 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE
Sbjct: 241 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 289

[Close]

BLAST of CmoCh01G002470.1 vs. TrEMBL
Match: A0A067L571_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16864 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 6.1e-101
Identity = 215/285 (75.44%), Postives = 233/285 (81.75%), Query Frame = 1


Query: 31  MAL-SAISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSES-KSAKASSPSDGVSS 90
           MAL S+I   PL++S    +   P  + RR  +P A+LSSSS  S +SA A   +  + S
Sbjct: 1   MALFSSILTSPLSISTPIRQ---PIKIKRRLLFPLATLSSSSPSSPESAAAPVTTRPLDS 60

Query: 91  SNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLALL 150
           S   ST  VE SR  DS+F+YA ANP+G      P +RF+ S ES+IERVIFDFRFLALL
Sbjct: 61  SKTPSTTFVESSRTHDSSFNYALANPTGNN----PFVRFVRSTESNIERVIFDFRFLALL 120

Query: 151 AVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 210
           A+GGSLAGSLLCFLNGCVYI DAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF
Sbjct: 121 AIGGSLAGSLLCFLNGCVYIFDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 180

Query: 211 GMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 270
           GMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM
Sbjct: 181 GMGLYGLFISNVPPDVSPQVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 240

Query: 271 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           ILLVKMFERSKMVTIATG DLLSYSVCIFLSSASLYILHNLH+ E
Sbjct: 241 ILLVKMFERSKMVTIATGTDLLSYSVCIFLSSASLYILHNLHKSE 278

[Close]

BLAST of CmoCh01G002470.1 vs. TrEMBL
Match: I3SM88_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 8.8e-100
Identity = 215/292 (73.63%), Postives = 236/292 (80.82%), Query Frame = 1


Query: 31  MALSA---ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKASSPSDGVS 90
           MALS    IS  P ++SL  HR   P+ + RR  YP ASLSSSS ES +A +SSP  G S
Sbjct: 1   MALSCYTFISASPPSLSLQSHR---PSHLPRRVFYPSASLSSSSPES-TASSSSPQSGPS 60

Query: 91  SSNGT------STPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFD 150
           +S  T      STP VE SR  D  F+YAYAN +G      PI+R + + ESSIER+IFD
Sbjct: 61  ASTSTTTTKASSTPFVE-SRPPDPAFNYAYANTNGS-----PIVRMVRATESSIERIIFD 120

Query: 151 FRFLALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLA 210
           FRFLALLAVGGSLAGSLLCFLNGC+YI DAYKVYW+ CVKG+H+G+MVLRLVEAIDVYLA
Sbjct: 121 FRFLALLAVGGSLAGSLLCFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLA 180

Query: 211 GTVMLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 270
           GTVMLIFGMGLYGLFISN  PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTK
Sbjct: 181 GTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 240

Query: 271 VGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCIFLSSASLYILHNLH+ +
Sbjct: 241 VGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLSSASLYILHNLHKTD 282

[Close]

BLAST of CmoCh01G002470.1 vs. TrEMBL
Match: B9RVJ9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0963860 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.6e-99
Identity = 208/288 (72.22%), Postives = 233/288 (80.90%), Query Frame = 1


Query: 31  MALSA-ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKA----SSPSDG 90
           MALSA I   PL++S    R   P T+ RR   P A+LSSSS  S    A    ++ +  
Sbjct: 1   MALSASIFTSPLSISSTPIRYR-PITISRRLLCPFATLSSSSPSSSHEPAAPAPATTTSP 60

Query: 91  VSSSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFL 150
           + SS   S P  E SR+ +S+F+YA+ANPSG      P+++F+ S ES+IER+IFDFRFL
Sbjct: 61  IDSSKNPSKPFAESSRSHNSSFNYAFANPSGSS----PVVQFVRSTESNIERIIFDFRFL 120

Query: 151 ALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVM 210
           ALLAVGGSLAGSLLCFLNGCVYI DAYKVYW+SC KG+HTGQMVLRLVEAIDVYLAGTVM
Sbjct: 121 ALLAVGGSLAGSLLCFLNGCVYIVDAYKVYWTSCCKGVHTGQMVLRLVEAIDVYLAGTVM 180

Query: 211 LIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHV 270
           LIFGMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKI SLDELKTKVGHV
Sbjct: 181 LIFGMGLYGLFISNVPPDVAPQVDRALKGSSLFGMFALKERPKWMKICSLDELKTKVGHV 240

Query: 271 IVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           IVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSSASLYILHNLH+ +
Sbjct: 241 IVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHNLHKSD 283

[Close]

BLAST of CmoCh01G002470.1 vs. TrEMBL
Match: D7T379_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00200 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 3.3e-99
Identity = 215/286 (75.17%), Postives = 235/286 (82.17%), Query Frame = 1


Query: 31  MAL-SAISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKA--SSPSDGVS 90
           MAL +A+S  PL++SL   R   P T  RRFS   AS+SSSS ES       S P++ + 
Sbjct: 1   MALFAAMSYTPLSLSLSRLR---PPTNHRRFSPCLASVSSSSHESSPPPPPPSPPTETIL 60

Query: 91  SSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLAL 150
           SSN  S PLVE SR  +S ++YA  +P        PI+RF+  +ESSIERVIFDFRFLAL
Sbjct: 61  SSNPPSKPLVESSRPLNSTYNYALPDPKAS-----PIVRFVRYSESSIERVIFDFRFLAL 120

Query: 151 LAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLI 210
           LAVGGSLAGSLLCFLNGCVYI DAYKVYW+SCVKGIHTG+MVLRLVEAIDVYLAGTVMLI
Sbjct: 121 LAVGGSLAGSLLCFLNGCVYIVDAYKVYWTSCVKGIHTGKMVLRLVEAIDVYLAGTVMLI 180

Query: 211 FGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIV 270
           FGMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIV
Sbjct: 181 FGMGLYGLFISNVPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIV 240

Query: 271 MILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           MILLVKMFERSKMVTIATG+DLLSYSVCIFLSSASLYIL+NLH+ E
Sbjct: 241 MILLVKMFERSKMVTIATGMDLLSYSVCIFLSSASLYILNNLHKAE 278

[Close]

BLAST of CmoCh01G002470.1 vs. TAIR10
Match: AT5G13720.1 (AT5G13720.1 Uncharacterised protein family (UPF0114))

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-88
Identity = 197/285 (69.12%), Postives = 220/285 (77.19%), Query Frame = 1


Query: 31  MALSA-ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKASSPSDGVSSS 90
           MALS+ IS  PL++S+  + L  PT   RRF  P A+L SS  ES SA +S P+      
Sbjct: 1   MALSSLISATPLSLSVPRY-LVLPTR--RRFHLPLATLDSSPPES-SASSSIPTS--IPV 60

Query: 91  NGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLALLA 150
           NG + P    +R  DS                 P  +F  S ES++ER+IFDFRFLALLA
Sbjct: 61  NGNTLPSSYGTRKDDS-----------------PFAQFFRSTESNVERIIFDFRFLALLA 120

Query: 151 VGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIFG 210
           VGGSLAGSLLCFLNGCVYI +AYKVYW++C KGIHTGQMVLRLVEAIDVYLAGTVMLIF 
Sbjct: 121 VGGSLAGSLLCFLNGCVYIVEAYKVYWTNCSKGIHTGQMVLRLVEAIDVYLAGTVMLIFS 180

Query: 211 MGLYGLFISNVSPDELPP-VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 270
           MGLYGLFIS+ SP ++PP  DRAL+ SSLFGMFA+KERPKWMKISSLDELKTKVGHVIVM
Sbjct: 181 MGLYGLFISH-SPHDVPPESDRALRSSSLFGMFAMKERPKWMKISSLDELKTKVGHVIVM 240

Query: 271 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLH+ E
Sbjct: 241 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHKGE 261

[Close]

BLAST of CmoCh01G002470.1 vs. TAIR10
Match: AT4G19390.1 (AT4G19390.1 Uncharacterised protein family (UPF0114))

HSP 1 Score: 169.5 bits (428), Expect = 3.3e-42
Identity = 103/239 (43.10%), Postives = 146/239 (61.09%), Query Frame = 1


Query: 72  SESKSAKASSPSDGVSSSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSA 131
           S  +  K  S +    +S+  S     P R A ++ S + +  +          RF  + 
Sbjct: 39  SSFRGLKLPSRTTKTITSSDWSWSYRSPGRLASASTSTSASTSTSAAVTSNSTNRFE-AL 98

Query: 132 ESSIERVIFDFRFLALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLR 191
           E  IE+VI+  RF+  L   GSL GS+LCF+ GC+Y+ D++  Y       ++ G+++  
Sbjct: 99  EEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------SVNRGKVIFL 158

Query: 192 LVEAIDVYLAGTVMLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMK 251
           LVEAID+YL GTVML+FG+GLY LFISN+   E    D     SSLFGMF LKERP+W++
Sbjct: 159 LVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLKERPQWLE 218

Query: 252 ISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLH 311
           + S+ ELKTK+GHVIVM+LL+ +F++SK V I +  DLL  SV IF SSA L++L  L+
Sbjct: 219 VKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSACLFLLSRLN 270

[Close]

BLAST of CmoCh01G002470.1 vs. NCBI nr
Match: gi|659123749|ref|XP_008461820.1| (PREDICTED: uncharacterized protein LOC103500330 [Cucumis melo])

HSP 1 Score: 434.9 bits (1117), Expect = 1.2e-118
Identity = 244/287 (85.02%), Postives = 251/287 (87.46%), Query Frame = 1


Query: 31  MALSAISPLPLAVSLGFHRLHCPTTVGRRFSYP-RASLSSSSSESKSAKASSPSDG-VSS 90
           MA SA SPLP  VSLGF R   PTT   R S+P  ASLSSSSSESKSAK+SSP+D  VSS
Sbjct: 1   MAFSAFSPLPFPVSLGFRRPQSPTTAFPRLSFPVSASLSSSSSESKSAKSSSPTDNLVSS 60

Query: 91  SNGTSTP-LVEPSRAADSNFSYAYANPSGGGGAFL-PIIRFMGSAESSIERVIFDFRFLA 150
           SNGT+ P  VEPS   DSNF YA+ NP+    A L PI+ FM S ESSIERVIFDFRFLA
Sbjct: 61  SNGTTPPSFVEPSTPPDSNFPYAFPNPTPAASASLHPILGFMQSTESSIERVIFDFRFLA 120

Query: 151 LLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVML 210
           LLAVGGSLAGS LCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVML
Sbjct: 121 LLAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVML 180

Query: 211 IFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVI 270
           IFGMGLYGLFISNVSPDE P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVI
Sbjct: 181 IFGMGLYGLFISNVSPDEPPLVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVI 240

Query: 271 VMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE
Sbjct: 241 VMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 287

[Close]

BLAST of CmoCh01G002470.1 vs. NCBI nr
Match: gi|778682741|ref|XP_011651765.1| (PREDICTED: uncharacterized protein LOC101217857 [Cucumis sativus])

HSP 1 Score: 425.2 bits (1092), Expect = 9.6e-116
Identity = 238/289 (82.35%), Postives = 250/289 (86.51%), Query Frame = 1


Query: 31  MALSAISPLPLAVSLGFHRLHCPTTVGRRFSYP-RASLSSSSSESKSAKASSPSDG-VSS 90
           MA SA SPLP  +SLGF R   PTT   R  +P  +SLSSSSSESKSAK+SSP+D  VSS
Sbjct: 1   MAFSAFSPLPFPLSLGFRRPQSPTTAFPRLPFPISSSLSSSSSESKSAKSSSPTDNLVSS 60

Query: 91  SNGTSTP---LVEPSRAADSNFSYAYANPSGGGGAFL-PIIRFMGSAESSIERVIFDFRF 150
           SNGT+ P    V+PS    SNF+YA+ NP+    A L PI+ FM SAESSIERVIFDFRF
Sbjct: 61  SNGTTPPSPSFVDPSTPPHSNFTYAFPNPTPPASASLHPILGFMQSAESSIERVIFDFRF 120

Query: 151 LALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 210
           LAL AVGGSLAGS LCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV
Sbjct: 121 LALFAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTV 180

Query: 211 MLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGH 270
           MLIFGMGLYGLFISNVSPDE P VDRAL+GSSLFGMFALKERPKWMKISSLDELKTKVGH
Sbjct: 181 MLIFGMGLYGLFISNVSPDEPPSVDRALQGSSLFGMFALKERPKWMKISSLDELKTKVGH 240

Query: 271 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE
Sbjct: 241 VIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 289

[Close]

BLAST of CmoCh01G002470.1 vs. NCBI nr
Match: gi|802555766|ref|XP_012065612.1| (PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas])

HSP 1 Score: 375.6 bits (963), Expect = 8.7e-101
Identity = 215/285 (75.44%), Postives = 233/285 (81.75%), Query Frame = 1


Query: 31  MAL-SAISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSES-KSAKASSPSDGVSS 90
           MAL S+I   PL++S    +   P  + RR  +P A+LSSSS  S +SA A   +  + S
Sbjct: 1   MALFSSILTSPLSISTPIRQ---PIKIKRRLLFPLATLSSSSPSSPESAAAPVTTRPLDS 60

Query: 91  SNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFLALL 150
           S   ST  VE SR  DS+F+YA ANP+G      P +RF+ S ES+IERVIFDFRFLALL
Sbjct: 61  SKTPSTTFVESSRTHDSSFNYALANPTGNN----PFVRFVRSTESNIERVIFDFRFLALL 120

Query: 151 AVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 210
           A+GGSLAGSLLCFLNGCVYI DAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF
Sbjct: 121 AIGGSLAGSLLCFLNGCVYIFDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVMLIF 180

Query: 211 GMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 270
           GMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM
Sbjct: 181 GMGLYGLFISNVPPDVSPQVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVM 240

Query: 271 ILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           ILLVKMFERSKMVTIATG DLLSYSVCIFLSSASLYILHNLH+ E
Sbjct: 241 ILLVKMFERSKMVTIATGTDLLSYSVCIFLSSASLYILHNLHKSE 278

[Close]

BLAST of CmoCh01G002470.1 vs. NCBI nr
Match: gi|388506628|gb|AFK41380.1| (unknown [Lotus japonicus])

HSP 1 Score: 371.7 bits (953), Expect = 1.3e-99
Identity = 215/292 (73.63%), Postives = 236/292 (80.82%), Query Frame = 1


Query: 31  MALSA---ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKASSPSDGVS 90
           MALS    IS  P ++SL  HR   P+ + RR  YP ASLSSSS ES +A +SSP  G S
Sbjct: 1   MALSCYTFISASPPSLSLQSHR---PSHLPRRVFYPSASLSSSSPES-TASSSSPQSGPS 60

Query: 91  SSNGT------STPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFD 150
           +S  T      STP VE SR  D  F+YAYAN +G      PI+R + + ESSIER+IFD
Sbjct: 61  ASTSTTTTKASSTPFVE-SRPPDPAFNYAYANTNGS-----PIVRMVRATESSIERIIFD 120

Query: 151 FRFLALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLA 210
           FRFLALLAVGGSLAGSLLCFLNGC+YI DAYKVYW+ CVKG+H+G+MVLRLVEAIDVYLA
Sbjct: 121 FRFLALLAVGGSLAGSLLCFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLA 180

Query: 211 GTVMLIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 270
           GTVMLIFGMGLYGLFISN  PD  P VDRALKGSSLFGMFALKERPKWMKISSLDELKTK
Sbjct: 181 GTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTK 240

Query: 271 VGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           VGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCIFLSSASLYILHNLH+ +
Sbjct: 241 VGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLSSASLYILHNLHKTD 282

[Close]

BLAST of CmoCh01G002470.1 vs. NCBI nr
Match: gi|255553454|ref|XP_002517768.1| (PREDICTED: uncharacterized protein LOC8259271 [Ricinus communis])

HSP 1 Score: 370.2 bits (949), Expect = 3.7e-99
Identity = 208/288 (72.22%), Postives = 233/288 (80.90%), Query Frame = 1


Query: 31  MALSA-ISPLPLAVSLGFHRLHCPTTVGRRFSYPRASLSSSSSESKSAKA----SSPSDG 90
           MALSA I   PL++S    R   P T+ RR   P A+LSSSS  S    A    ++ +  
Sbjct: 1   MALSASIFTSPLSISSTPIRYR-PITISRRLLCPFATLSSSSPSSSHEPAAPAPATTTSP 60

Query: 91  VSSSNGTSTPLVEPSRAADSNFSYAYANPSGGGGAFLPIIRFMGSAESSIERVIFDFRFL 150
           + SS   S P  E SR+ +S+F+YA+ANPSG      P+++F+ S ES+IER+IFDFRFL
Sbjct: 61  IDSSKNPSKPFAESSRSHNSSFNYAFANPSGSS----PVVQFVRSTESNIERIIFDFRFL 120

Query: 151 ALLAVGGSLAGSLLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAIDVYLAGTVM 210
           ALLAVGGSLAGSLLCFLNGCVYI DAYKVYW+SC KG+HTGQMVLRLVEAIDVYLAGTVM
Sbjct: 121 ALLAVGGSLAGSLLCFLNGCVYIVDAYKVYWTSCCKGVHTGQMVLRLVEAIDVYLAGTVM 180

Query: 211 LIFGMGLYGLFISNVSPDELPPVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHV 270
           LIFGMGLYGLFISNV PD  P VDRALKGSSLFGMFALKERPKWMKI SLDELKTKVGHV
Sbjct: 181 LIFGMGLYGLFISNVPPDVAPQVDRALKGSSLFGMFALKERPKWMKICSLDELKTKVGHV 240

Query: 271 IVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 314
           IVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSSASLYILHNLH+ +
Sbjct: 241 IVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHNLHKSD 283

The following BLAST results are available for this feature:

BLAST of CmoCh01G002470.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002470.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC7_CUCSA	6.7e-116	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G687750 PE=4 SV=1	[more]
A0A067L571_JATCU	6.1e-101	75.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16864 PE=4 SV=1	[more]
I3SM88_LOTJA	8.8e-100	73.63	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
B9RVJ9_RICCO	2.6e-99	72.22	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0963860 PE=4 SV=1	[more]
D7T379_VITVI	3.3e-99	75.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g00200 PE=4 SV=...	[more]

BLAST of CmoCh01G002470.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13720.1	2.4e-88	69.12	Uncharacterised protein family (UPF0114)	[more]
AT4G19390.1	3.3e-42	43.10	Uncharacterised protein family (UPF0114)	[more]

BLAST of CmoCh01G002470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123749\|ref\|XP_008461820.1\|	1.2e-118	85.02	PREDICTED: uncharacterized protein LOC103500330 [Cucumis melo]	[more]
gi\|778682741\|ref\|XP_011651765.1\|	9.6e-116	82.35	PREDICTED: uncharacterized protein LOC101217857 [Cucumis sativus]	[more]
gi\|802555766\|ref\|XP_012065612.1\|	8.7e-101	75.44	PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]	[more]
gi\|388506628\|gb\|AFK41380.1\|	1.3e-99	73.63	unknown [Lotus japonicus]	[more]
gi\|255553454\|ref\|XP_002517768.1\|	3.7e-99	72.22	PREDICTED: uncharacterized protein LOC8259271 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005134	UPF0114
IPR016804	UPF0114_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G002470	CmoCh01G002470	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002470.1	CmoCh01G002470.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002470.1.exon.1	CmoCh01G002470.1.exon.1	exon
CmoCh01G002470.1.exon.2	CmoCh01G002470.1.exon.2	exon
CmoCh01G002470.1.exon.3	CmoCh01G002470.1.exon.3	exon
CmoCh01G002470.1.exon.4	CmoCh01G002470.1.exon.4	exon
CmoCh01G002470.1.exon.5	CmoCh01G002470.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002470.1.five_prime_UTR.1	CmoCh01G002470.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002470.1.CDS.1	CmoCh01G002470.1.CDS.1	CDS
CmoCh01G002470.1.CDS.2	CmoCh01G002470.1.CDS.2	CDS
CmoCh01G002470.1.CDS.3	CmoCh01G002470.1.CDS.3	CDS
CmoCh01G002470.1.CDS.4	CmoCh01G002470.1.CDS.4	CDS
CmoCh01G002470.1.CDS.5	CmoCh01G002470.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002470.1.three_prime_UTR.1	CmoCh01G002470.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005134	Uncharacterised protein family UPF0114	PFAM	PF03350	UPF0114	coord: 139..277 score: 2.5
IPR016804	Uncharacterised protein family UPF0114, plant	PIR	PIRSF022348	UCP022348	coord: 27..313 score: 3.3E
None	No IPR available	PANTHER	PTHR31721	FAMILY NOT NAMED	coord: 58..313 score: 5.5E
None	No IPR available	PANTHER	PTHR31721:SF1	SUBFAMILY NOT NAMED	coord: 58..313 score: 5.5E