CmaCh20G008750 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G008750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mitochondrial import receptor subunit TOM6-like protein
Location	Cma_Chr20 : 4186201 .. 4188218 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTTGTCGACGAGGACATTGGGTGAGTGACACGTCACTGTTCATGAATTTAAGGCCCTCGAGTTTTCATCTTCTGCGGACCATCACATTCCAATCTTCCATGTGTCTATTGCCACGTCACCAACCCTCCTTTCAATATATTATCAAACATAATTCCAACATATCTCAAATTCATTAAATTCCCGTCCTATCCAAACCCAAACCCAAACAACCTTTAAAGTCTATCCAAGACGTAACTTCGATCACTTAAAAGAGATACACTACTCGAGTAGGTGTCTAACTAAACTTAACAACACCACTTCAAACAAATCATTAACTCAGCACCAATGCAAAGTCTGACCTATCACGCTAGCTTGTTACAGAATCCGCTAACATGTACTTATTCAACCATATTCTCACATCATAATAGAACACAATTGCTCGATATATTACTTAAATTATATTCAATATTATTTATCATAAAAAATTTAGGAAGGAAAGTATAAAGATAGAAAAACTATGATGCTACAATGATATCATACCTATCTCATGTGATTAAAAATGAAAAGAATATTAAGTTTTTTTTTTTTAATTTTAAATAATGAAATAGGACAAAAGTTTTTTCTAGTTGAATTAATGGAAAAAAATTTGCTTTCAAAAAGATTGGGAGGTGGAAGACACGTGGCAGATGTTGATTGGAGAAAGTGGGTAGATGTGGGCACAGAGGAACAGAAAGTAAAAAGTGGTGGCCCACATAAGAGAGAGTAGGGATCTTTCCATGAAATTTGATGTCAAAGGAAAATCCATTCATACGTAAAACAAAATATAATAATAATAATAAATAATTAATTAAAAATAAAATAAATAATTAAGATAATAGAATGGATGTATGAGAACCAGTGCAATTAGAGTCCACAGCCACAAAGTCAATAAAAAAAAATAAATAAATAAATTTAATTTTAATAATAAATAAATAAATAAATAAATAAATTTTTGGGTCAAAAGTTGATAGTGATGTGAAGGGCAACTTTTTACATAATGGAGCACTAAAAATAGGTTGGCCAATACAAATTCTCCCTCTGGAATACTATCGAAAAAATGTGTGTATTTTTTTTTAATATTTAATAAAATTTTAAATTATTAATTTTATAATTACCAAATTTACAATATTTATCTAATTTTTAAATTTTAAAAAAATAAATCTAGTTGACAATTCTTTAGTTTCAATAATTTTAAAAATATTTAAAATTTAAATATAGTTTAGTTTTGGAAGGTAAATATAAACGTTACAAATAAATAATTTATATATTTTGATGAACTATTTATATTTTTAAAATTATAATTTAATTAGAAACAAATATCATCCGAACAAACAATTATATATTAAATAAAGGGTTGGACAAGTTTTTTTTTATTCTCGATTTTATTAATTTAAATTAAAATATCAATTTGGATCATAAACCTAATTAAAATTCTAAATTTAAAAAATTTTAAACTTTCAAATTTTTTATTAATGTAATTCAAAAAATACTAATGAATTTTTAATTAAAAAAATAATCTATGATATGAAATTATTTTTGTTCATCCAATAAAAAAAATATTTGATCAGTTTTTTCAAATAAATTAGTAACAGTAAAAGTATTTTTAATTTTTTAAATTGAAGAATATTTTAAAAATAAAATATTAACCATTTTTATTGTTTTAAAAGATTTAAGAATTTTATTAGGAGTATTTAAAAAAAAAATTATGAATATTTTGATGTAAAATATATGGTGGGACTCGGCCTTAAACCCACCCCAAGTCGAAAATCCCAAATCAGAGTTCTAGGGTTTTATCGTCGATTTTCGATCATTCCTCTGTTCGGCGAAAAATGTTTCCAGGAATGTTTATGCGCAAGCCTGACAAGGCTGCTGCTCTCAAGCAACTCCGATCACACGTTGCTATGTTTGGCGTATGGGTTGCTGTAATTCGAGTCACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

mRNA sequence

ATGCGATTTGTCGACGAGGACATTGGGGTTTTATCGTCGATTTTCGATCATTCCTCTGTTCGGCGAAAAATGTTTCCAGGAATGTTTATGCGCAAGCCTGACAAGGCTGCTGCTCTCAAGCAACTCCGATCACACGTTGCTATGTTTGGCGTATGGGTTGCTGTAATTCGAGTCACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Coding sequence (CDS)

ATGCGATTTGTCGACGAGGACATTGGGGTTTTATCGTCGATTTTCGATCATTCCTCTGTTCGGCGAAAAATGTTTCCAGGAATGTTTATGCGCAAGCCTGACAAGGCTGCTGCTCTCAAGCAACTCCGATCACACGTTGCTATGTTTGGCGTATGGGTTGCTGTAATTCGAGTCACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Protein sequence

MRFVDEDIGVLSSIFDHSSVRRKMFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF

Homology

[Close]

BLAST of CmaCh20G008750 vs. Swiss-Prot
Match: TOM6_ARATH (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana GN=TOM6 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

[Close]

BLAST of CmaCh20G008750 vs. TrEMBL
Match: A0A0A0LP29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G238770 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CmaCh20G008750 vs. TrEMBL
Match: A0A0D2S424_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G163800 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.6e-21
Identity = 48/54 (88.89%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of CmaCh20G008750 vs. TrEMBL
Match: A0A0D2TQL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G163900 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL+ HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKVHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of CmaCh20G008750 vs. TrEMBL
Match: A0A061FHJ2_THECC (Translocase of the outer mitochondrial membrane 6 OS=Theobroma cacao GN=TCM_035188 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-20
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL+ HVAMFGVWVAV+RVTPY+LHYLSD+KEELKL+F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKVHVAMFGVWVAVVRVTPYILHYLSDDKEELKLEF 54

[Close]

BLAST of CmaCh20G008750 vs. TrEMBL
Match: A0A0B0NUA5_GOSAR (Mitochondrial import receptor subunit TOM6-like protein OS=Gossypium arboreum GN=F383_03473 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-20
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLD 77
          MFPGMFMRKPDKAAALKQL+ HVAMFGVWVAV+RVTPY+LHYLSDEKEELK+D
Sbjct: 1  MFPGMFMRKPDKAAALKQLKVHVAMFGVWVAVVRVTPYILHYLSDEKEELKID 53

[Close]

BLAST of CmaCh20G008750 vs. TAIR10
Match: AT1G49410.1 (AT1G49410.1 translocase of the outer mitochondrial membrane 6)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-19
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

[Close]

BLAST of CmaCh20G008750 vs. NCBI nr
Match: gi|449474805|ref|XP_004154290.1| (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CmaCh20G008750 vs. NCBI nr
Match: gi|823251022|ref|XP_012458101.1| (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimondii])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 48/54 (88.89%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of CmaCh20G008750 vs. NCBI nr
Match: gi|823251024|ref|XP_012458102.1| (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimondii])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-20
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL+ HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKVHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of CmaCh20G008750 vs. NCBI nr
Match: gi|590599369|ref|XP_007019163.1| (Translocase of the outer mitochondrial membrane 6 [Theobroma cacao])

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-20
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          MFPGMFMRKPDKAAALKQL+ HVAMFGVWVAV+RVTPY+LHYLSD+KEELKL+F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKVHVAMFGVWVAVVRVTPYILHYLSDDKEELKLEF 54

[Close]

BLAST of CmaCh20G008750 vs. NCBI nr
Match: gi|728838665|gb|KHG18108.1| (Mitochondrial import receptor subunit TOM6 -like protein [Gossypium arboreum])

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-20
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 1


Query: 24 MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLD 77
          MFPGMFMRKPDKAAALKQL+ HVAMFGVWVAV+RVTPY+LHYLSDEKEELK+D
Sbjct: 1  MFPGMFMRKPDKAAALKQLKVHVAMFGVWVAVVRVTPYILHYLSDEKEELKID 53

The following BLAST results are available for this feature:

BLAST of CmaCh20G008750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TOM6_ARATH	3.0e-18	75.93	Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana GN=TO...	[more]

BLAST of CmaCh20G008750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP29_CUCSA	1.8e-22	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G238770 PE=4 SV=1	[more]
A0A0D2S424_GOSRA	7.6e-21	88.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G163800 PE=4 SV=1	[more]
A0A0D2TQL6_GOSRA	1.7e-20	88.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G163900 PE=4 SV=1	[more]
A0A061FHJ2_THECC	2.2e-20	88.89	Translocase of the outer mitochondrial membrane 6 OS=Theobroma cacao GN=TCM_0351...	[more]
A0A0B0NUA5_GOSAR	2.9e-20	90.57	Mitochondrial import receptor subunit TOM6-like protein OS=Gossypium arboreum GN...	[more]

BLAST of CmaCh20G008750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49410.1	1.7e-19	75.93	translocase of the outer mitochondrial membrane 6	[more]

BLAST of CmaCh20G008750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449474805\|ref\|XP_004154290.1\|	2.6e-22	100.00	PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus]	[more]
gi\|823251022\|ref\|XP_012458101.1\|	1.1e-20	88.89	PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimond...	[more]
gi\|823251024\|ref\|XP_012458102.1\|	2.4e-20	88.89	PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimond...	[more]
gi\|590599369\|ref\|XP_007019163.1\|	3.2e-20	88.89	Translocase of the outer mitochondrial membrane 6 [Theobroma cacao]	[more]
gi\|728838665\|gb\|KHG18108.1\|	4.1e-20	90.57	Mitochondrial import receptor subunit TOM6 -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G008750.1	CmaCh20G008750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35999	FAMILY NOT NAMED	coord: 24..77 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G008750	Cucsa.109920	Cucumber (Gy14) v1	cgycmaB0253
CmaCh20G008750	Cla010292	Watermelon (97103) v1	cmawmB509
CmaCh20G008750	Csa2G238770	Cucumber (Chinese Long) v2	cmacuB542
CmaCh20G008750	MELO3C021943	Melon (DHL92) v3.5.1	cmameB495
CmaCh20G008750	ClCG09G017780	Watermelon (Charleston Gray)	cmawcgB474
CmaCh20G008750	CSPI02G11860	Wild cucumber (PI 183967)	cmacpiB547
CmaCh20G008750	CmoCh20G008820	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G008750	Lsi10G003330	Bottle gourd (USVL1VR-Ls)	cmalsiB507
CmaCh20G008750	MELO3C021943.2	Melon (DHL92) v3.6.1	cmamedB575
CmaCh20G008750	CsaV3_2G014370	Cucumber (Chinese Long) v3	cmacucB0651
CmaCh20G008750	Cla97C09G179170	Watermelon (97103) v2	cmawmbB598
CmaCh20G008750	CsGy2G011890	Cucumber (Gy14) v2	cgybcmaB218
CmaCh20G008750	Carg22967	Silver-seed gourd	carcmaB1232
CmaCh20G008750	Carg23629	Silver-seed gourd	carcmaB1104

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G008750	CmaCh02G004260	Cucurbita maxima (Rimu)	cmacmaB469

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G008750	Cucurbita maxima (Rimu)	cmacmaB446
CmaCh20G008750	Cucurbita moschata (Rifu)	cmacmoB548
CmaCh20G008750	Cucurbita moschata (Rifu)	cmacmoB554
CmaCh20G008750	Cucumber (Chinese Long) v2	cmacuB546
CmaCh20G008750	Watermelon (Charleston Gray)	cmawcgB485
CmaCh20G008750	Cucurbita pepo (Zucchini)	cmacpeB561
CmaCh20G008750	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G008750	Cucurbita pepo (Zucchini)	cmacpeB585
CmaCh20G008750	Wax gourd	cmawgoB0684