Carg22967 (gene) Silver-seed gourd

Overview
NameCarg22967
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmitochondrial import receptor subunit TOM6 homolog
LocationCucurbita_argyrosperma_scaffold_319 : 167729 .. 170736 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCCGGAATGTTTATGCGTAAGCCCGACAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTACACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAGGTCATCTCTGAGGTATTTCGAGTCTATTGGATTTTTAAGGTCTAGATTTCTCTTTACTGTCTAATGTTTCACTATTGAGAAACGATGCGATTGCATCCCAATTTTGACATCTAGTTTATTTCCTGATCTATTTACTATGTGCGTATCATTCCTTGGAAGTTTGTTCGAATAAGAAAAAGTATTGTTTCGAAATAGATCTGTTCTTGTTCGATTCGGCGTTTGAATGAACGATTTCTCTGCTTCATGTTTATACTGCCGTTTTCTGTAGTTTTTTGAATTTTTTTGTTGTTAATTCTACACATCGGTTGATTTTGTAAACTTAGCCTCTTAGCAGGTTCTGTATGTTAAATATTGATGTATCTGTGGTTTTACTTATTCATTTGTTTTGAATTATTTGCAATGTTTTCTTTGCTATTTAGCTAAAGACACTGAGAACCATGTTGAACTAATTATACCCGAAGTATTTTGAACAAAATAAGTGATTGTGCTGCATTGATCATGTTTCGTTTTGCTAATTGCTGTTTTGGTTTGAATATTACATTTAATTTAAAATCTATGTTCCTCTCTGTCGCTTGACCTCTCTCGAAATGCTTTTAAAAGGGTGCCATAAGTTTATACCCTCTTACTGAATATGAGCATATGGCTTTCCTGATATTCTGAAGAATTTAGAGATCGAAGAAGATTTCATAACTTGATTCCTGCTCAGTGCATTATTAGAAGTTGTTCATCAACAATAACATAGTCGATAGGGGTACTTTTGAAGTCAATCAAATGCACAATGCCTTCACCGAAACTCACACTCACAACCCATACTGTTGAGATTCGAGCCTGCAACATGTAGAATGGTTGAATTTTTGCCAACCAAATGAGCTAAACTGTTTCGGTAGGGATACTCGAATGCAATGAGGTTTGAAGAAAAATTATATGAGTATGCTAAGGAATCCAAGATTTCTTTGCATTTGATAATACCTTCCTGTGGAGGATCTGCTGACTGCTATGAGATGGGAGTTGTAATGGTCTAAGCCCGCCGCTAGCAGATATTGTCCTGTTTAGGCTTTCCCTTCCAGGCTTCCCCTCGAGGTTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATATAGAATGCTTCATTCTCCTCCCCAATCGATGTGGGATCTCACAATCGATGTGGGATCTCACAGGAATGGGAAAATTTAACAAGTTTTAGTTGATAGGTTTTCTGCTTGAAAATGAAATTATATGCAATATATTTAATCGATTCACCTTCTGGTTGGTAGGAAATTAAACCACCTCTATGCTTCATTCCAATGTGATTGATTTAGGTTTCAGTTCCTTTTCTCTGGTGATACTGATATCTCCTAATGATTTATGTTTGCTGAATCCAATAGATATTTTTCTTTGCCCGTCACTCCTCCCTGACTATCACTTACAAAAAAGCATCATTGCTGCTTATGGTTACTCCATGTGCTTATCAAATGGAACATGGCCCTGTTAATCTTGAAGCCAAGCCTGGGCTTGCAGTAATTTGCTTGACCACTCTCTACTCTCTCCTATTCTCTCTATAACAGCCCAAGCCCAAGCCCAAGCCCACCGCTAGCAATATTGTCTTCTTTGGACTTTCCCTTCAAGGGCTTTCCTCAAGGTTTTAGAACGCGTCTACTAGGTAGAGATTTCGTTTCCCTCTCCAACATGGGATCTCACATCCACATTCCTCCATTTCTTTCTTTAATTTGGTCAACCCGTAACTGTTTTTCTTCCTAATTAGTTAGCTGAGGTTAGCTTTGTTTATTTGTATTGCTGTTATATAGCTCACTTTTTCAAGACAATAAATTGAGGTTAGTTGTGTTTCTTCATATGGCGGGTTATATATATAGCTCACTATGCTCAGCTTCCTTCCACTTCTAGTTATTGATAACCTTAACTTTGTGCTACATGCCTATGAGTATCTATATTCAGATTTGCACAAATCACTTACCAATCGTTCCTTCATTCTTCGTGCAGTTTTGATTGGACCATGGGGTGAAGGCTTTCCAAATCGTAACTTTCTTTCTTCCATTGATTCATTAGGGAAAAGGGGGACGGAGAGGCTTTTTCATCTTTTTCATTATTTTTCAATTTTGCTCTTTCTATTGGATCATAGGCTGGTTATTATCATGTGATGAGACTTGAAATCGTTTCATAAAATCTCAGGTTGGCTTTGTAGAATGTGTTAATTTAAGATGCCTGATGACACTGTTCTTTTTTGCAGCTTTAAGTTATTAGCCTCAATTAATTCTATTTTAAACTCTCATTAGGAATGTATGATTATTTATGTAGATCGCATAAACATATCCTTTAATTAACCTTATAAAGCTAGCTCTAAGTTGTAACCAATTCATGTCACGTAAATTTCCAATCGACTGTTTTTCAGTTAATATTTATCTTCAGTATATGAAATGTGGTATGTCATTTTGTTTAATCATTCATATGTGATTTTTGTTAGATGTGCTAAATTTTGTGCCTTTGATCAAGAGCTTATTACAAATTTCAATTTCTTTCATATATATATATAGGGAGAGAGGTTGATAGGTTTTGTAGACGGTCTAGGTCTTTTAGTTCTCTATAGCTTGGGTCGACTAGCCTGCTACAAAGTAAGTGCAGCTAGCATGAGACTAATATGGATCGGTTTATCCATGTATTTGGATTGATGATTTAATCTTAATGTTTTTCGTGATTAGACAATATAAGAATGATTAAGTATGACACATAAATCGAATTGTTTCGTAAATTATTGGTTATGATGACATAGAAGGGGTATGCCACTAATCGAGGAGGAGATGAACAAGCTGAGGGTTAG

mRNA sequence

ATGTTTCCCGGAATGTTTATGCGTAAGCCCGACAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTTGCTATGTTCGGCGTATGGGTTGCTGGAGAGAGGTTGATAGGTTTTGTAGACGGTCTAGGTCTTTTAGTTCTCTATAGCTTGGGTCGACTAGCCTGCTACAAAGGGTATGCCACTAATCGAGGAGGAGATGAACAAGCTGAGGGTTAG

Coding sequence (CDS)

ATGTTTCCCGGAATGTTTATGCGTAAGCCCGACAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTTGCTATGTTCGGCGTATGGGTTGCTGGAGAGAGGTTGATAGGTTTTGTAGACGGTCTAGGTCTTTTAGTTCTCTATAGCTTGGGTCGACTAGCCTGCTACAAAGGGTATGCCACTAATCGAGGAGGAGATGAACAAGCTGAGGGTTAG

Protein sequence

MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFVDGLGLLVLYSLGRLACYKGYATNRGGDEQAEG
Homology
[Close]
BLAST of Carg22967 vs. NCBI nr
Match: XP_004154290.1 (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_008459248.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis melo] >XP_011649217.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_022943932.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022943933.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022948071.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022986654.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986655.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986656.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023007537.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023532551.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511843.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511844.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >KGN61761.1 hypothetical protein Csa_2G238770 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-09
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVA  R+  +V
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYV 39

[Close]
BLAST of Carg22967 vs. NCBI nr
Match: XP_022148517.1 (mitochondrial import receptor subunit TOM6 homolog [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-09
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVA  R+  +V
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYV 39

[Close]
BLAST of Carg22967 vs. NCBI nr
Match: XP_018847144.1 (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Juglans regia])

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQLRSHVAMFG WVA  R+  ++
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGAWVAVIRVAPYI 39

[Close]
BLAST of Carg22967 vs. NCBI nr
Match: XP_012069348.1 (mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas] >KDP46200.1 hypothetical protein JCGZ_10040 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-08
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVA  R+  ++
Sbjct: 1  MFPGMFMRKPDKAAALKQLKTHVAMFGVWVAVVRVAPYI 39

[Close]
BLAST of Carg22967 vs. NCBI nr
Match: KHF97675.1 (Mitochondrial import receptor subunit TOM6 -like protein [Gossypium arboreum])

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-08
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVA  R+  ++
Sbjct: 1  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYI 39

[Close]
BLAST of Carg22967 vs. TAIR10
Match: AT1G49410.1 (translocase of the outer mitochondrial membrane 6)

HSP 1 Score: 59.7 bits (143), Expect = 8.5e-10
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV   R   +V
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYV 39

[Close]
BLAST of Carg22967 vs. Swiss-Prot
Match: sp|Q9XIA7|TOM6_ARATH (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM6 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-08
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV   R   +V
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYV 39

[Close]
BLAST of Carg22967 vs. TrEMBL
Match: tr|A0A1S3C9U8|A0A1S3C9U8_CUCME (mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LOC103498428 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVA  R+  +V
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYV 39

[Close]
BLAST of Carg22967 vs. TrEMBL
Match: tr|A0A0A0LP29|A0A0A0LP29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVA  R+  +V
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYV 39

[Close]
BLAST of Carg22967 vs. TrEMBL
Match: tr|A0A2I4GTC4|A0A2I4GTC4_9ROSI (mitochondrial import receptor subunit TOM6 homolog OS=Juglans regia OX=51240 GN=LOC109010701 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQLRSHVAMFG WVA  R+  ++
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGAWVAVIRVAPYI 39

[Close]
BLAST of Carg22967 vs. TrEMBL
Match: tr|A0A0B0MFJ0|A0A0B0MFJ0_GOSAR (Mitochondrial import receptor subunit TOM6-like protein OS=Gossypium arboreum OX=29729 GN=F383_13644 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVA  R+  ++
Sbjct: 1  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYI 39

[Close]
BLAST of Carg22967 vs. TrEMBL
Match: tr|A0A067LN22|A0A067LN22_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10040 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAGERLIGFV 40
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVA  R+  ++
Sbjct: 1  MFPGMFMRKPDKAAALKQLKTHVAMFGVWVAVVRVAPYI 39

The following BLAST results are available for this feature:
BLAST of Carg22967 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004154290.17.7e-0984.62PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] ... [more]
XP_022148517.17.7e-0984.62mitochondrial import receptor subunit TOM6 homolog [Momordica charantia][more]
XP_018847144.12.9e-0879.49PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Juglans regia][more]
XP_012069348.13.8e-0876.92mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas] >KDP46200.1... [more]
KHF97675.13.8e-0876.92Mitochondrial import receptor subunit TOM6 -like protein [Gossypium arboreum][more]
BLAST of Carg22967 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49410.18.5e-1071.79translocase of the outer mitochondrial membrane 6[more]
BLAST of Carg22967 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9XIA7|TOM6_ARATH1.5e-0871.79Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=37... [more]
BLAST of Carg22967 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C9U8|A0A1S3C9U8_CUCME5.1e-0984.62mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A0A0LP29|A0A0A0LP29_CUCSA5.1e-0984.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1[more]
tr|A0A2I4GTC4|A0A2I4GTC4_9ROSI1.9e-0879.49mitochondrial import receptor subunit TOM6 homolog OS=Juglans regia OX=51240 GN=... [more]
tr|A0A0B0MFJ0|A0A0B0MFJ0_GOSAR2.5e-0876.92Mitochondrial import receptor subunit TOM6-like protein OS=Gossypium arboreum OX... [more]
tr|A0A067LN22|A0A067LN22_JATCU2.5e-0876.92Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10040 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005742mitochondrial outer membrane translocase complex
Vocabulary: INTERPRO
TermDefinition
IPR034554TOM6_plants
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22967-RACarg22967-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034554Mitochondrial import receptor subunit TOM6 homologue, plantsPANTHERPTHR35999FAMILY NOT NAMEDcoord: 1..31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22967Cla010292Watermelon (97103) v1carwmB0893
Carg22967Csa2G238770Cucumber (Chinese Long) v2carcuB0906
Carg22967MELO3C021943Melon (DHL92) v3.5.1carmeB0877
Carg22967ClCG09G017780Watermelon (Charleston Gray)carwcgB0865
Carg22967CSPI02G11860Wild cucumber (PI 183967)carcpiB0926
Carg22967Cucsa.109920Cucumber (Gy14) v1carcgyB1012
Carg22967CmaCh20G008750Cucurbita maxima (Rimu)carcmaB1232
Carg22967CmoCh20G008820Cucurbita moschata (Rifu)carcmoB1203
Carg22967Lsi10G003330Bottle gourd (USVL1VR-Ls)carlsiB808
Carg22967CsGy2G011890Cucumber (Gy14) v2carcgybB0879
Carg22967MELO3C021943.2Melon (DHL92) v3.6.1carmedB0885
Carg22967CsaV3_2G014370Cucumber (Chinese Long) v3carcucB0929
Carg22967Cla97C09G179170Watermelon (97103) v2carwmbB0931
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg22967Carg23629Silver-seed gourdcarcarB619
The following block(s) are covering this gene:
GeneOrganismBlock
Carg22967Wax gourdcarwgoB1036
Carg22967Wax gourdcarwgoB1037
Carg22967Cucumber (Gy14) v1carcgyB1011
Carg22967Cucurbita maxima (Rimu)carcmaB1233
Carg22967Cucurbita moschata (Rifu)carcmoB1204
Carg22967Cucurbita pepo (Zucchini)carcpeB1241
Carg22967Cucurbita pepo (Zucchini)carcpeB1242
Carg22967Cucurbita pepo (Zucchini)carcpeB1243
Carg22967Wild cucumber (PI 183967)carcpiB0927
Carg22967Cucumber (Chinese Long) v2carcuB0907
Carg22967Cucumber (Chinese Long) v3carcucB0930
Carg22967Bottle gourd (USVL1VR-Ls)carlsiB810
Carg22967Bottle gourd (USVL1VR-Ls)carlsiB809
Carg22967Melon (DHL92) v3.5.1carmeB0881
Carg22967Melon (DHL92) v3.6.1carmedB0889
Carg22967Watermelon (Charleston Gray)carwcgB0867
Carg22967Watermelon (Charleston Gray)carwcgB0868
Carg22967Watermelon (97103) v1carwmB0894
Carg22967Watermelon (97103) v1carwmB0895
Carg22967Watermelon (97103) v2carwmbB0930