Carg23629 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23629
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mitochondrial import receptor subunit TOM6 homolog
Location	Cucurbita_argyrosperma_scaffold_182 : 252549 .. 254934 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGAAGGGGGGTTTATTTGGATCCTTTGACTCGTTGTTAGGTCCTCCATGCGATTTGTCGACGAGGACCTTGGGTGAGTGACACGTCACTGTTCATGAATTTAAGGCCCTCGAGTTTTCATCTTCTGCGGACCATCACATTCCAATCTTCCATGTGTCTATTGCCACGTCACCAACCCTCCTCTCACTATATTATCAAACCTAATTCCAACCTATCTCAAATTCATTAAATTCCCATCCTATCCATCCCCAAACAACCTTCGAAGTTTATCCAAGGTATAACTCCGATCACTTAAAGAGATACACTACTTGAGTAGGTCTCTAACTAAACTTAGCAACACCACTTCAAACAAAGCATTAACTCGAACGCCAATGCAAAGTCTGACCTATCACGCTAGCTTGTTTTTGAACCCGCTAGCATGTACTTATTCAACCATATTCTCGCATCATAGTATAACGCAATTGCTCAATATATTACTTAAATCATATTCAATATGATGCTACAATGATATCATACAAATCTCATGCAATTAAATATGAAAAGAATATTAAGTTTTTTTTTTAATATTAAATAATGAAATAGGATAAAGTTTTCCCCAGTTGAATTAATGGAAAAAATTTGGCTTTCAAAAAGAATGGGAGGTGGAAGACACGTGGCAGAATTTGATTGGAGAAGGTGGGTAGATGTGGGCACAGAGAAGCAGAAAGTAAAAAGTGGTGGCCCACAGAAGAGGAGAGCAGGGATCTTCCATGAAATTTGATGCCAAAAAGGAAAACCCATTCATACGTAAAACAAAATATAATAATAATAATAATAATAAATAAATAAATAATTAAAAAGAAAATAAATAATTAAGATAATAGAATGGATGTATGAGAACCAGTGCAATTAGAGTCCACAGCCACAAAGTCATAAAAAATAAATTAAAAAAAAATAATTTAATTTAATAATAAATAAATAAATAAAATTTATTTTTTTTGGGTCAAAAGTTGATATTGATGTGAAGGGAAACTTTTTACATAATGGAGCACTAAAAATATGTTGGCCAATACAAATTCTCTCTCCATATCATTGAATACTAATAGATATTATAGGAAAAAATGTGGGTTTTGTTTTTAATATTTAATAAAATTTTAAATTATTAATTTTATATTTAAAAAATGTCGTCCTATAATATAATAATTACCAAATTTTAAATTTTAAAAAGTAAATATAGTTGTTATTCAATTCTCCGTTAAAATATAAATTTGGTCCCAATAATTTTAAAAATATTTAAAATCTAAGTCCAGTTTTGGAAGCTAAAATTAGATATTACAAATAATTTATATATTTGGATAAGTTTTATCTAATTTTTTAAATTATAATTTAATTAAAAACAAATTTCCATCCGAACAATTATATATTAAATAAAGAGTTGGACAATGTCTTTTTTATTCGATTTTATTAATTTTAATTTAAATTTCAATCCAATTGGATCATAAACTTAATTAAAATGGTAAATTTAATAATTATATATTAAAATTAAGTGATTTATCGAATTAAAAAAATCAATAAATTTATTAAATGTAAAATTAAAATTTGTATTTAATAATTTATCAATTCTTAAATATTTAAATTTTTTAAAAAAATTATTAGACTAAATTAATAAGAATATCCTTAAACTTTAAACTTGTCTCAAAATACTCATAAACTTTCAAAAGTTTGGATAATATTTCTAAAATTAATTTTGGATAAAAACAATTAATACTGTAATTCAAAAAAAAAAAAATTAACTCTAAAATTTTTTTAAAAGAGAGTCGTTAACTTCTAAAACATCCTTAAAACTTTCAAAAAAAAAATATTATTAATATCCTTAAATTTAAGGTTTAAAAAATACTAATAAATTTTGAAAAGTAACATTAAAAAAAAAATCTATCATATGAAATTATTTTCGTTTGTCCAGATAACAAAAAATTTTAACATTTTTTAAAAATAAAGTACTAACAGTAAAATTATTTTTAATTTTTTTAAATCGAAGAATATTTTAAAAATAAAATATTAATCATTTTTATTATTGATATTATTAGGAGTATTTTTTAAATAAAAATTAAAGAATATTTTTATGTAAAAATATATTGTTCGGACTCGGCCTTAAACCCACCCCAACCCGAAAATCCCAAATTAGAGTTCTAGGGTTTTATCGTCGACTTTCGATCATTCCTCTGTTCGGCGAAAAATGTTTCCAGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

mRNA sequence

ATGGAAGAGAAGGGGGGTTTATTTGGATCCTTTGACTCGTTGTTAGGTCCTCCATGCGATTTGTCGACGAGGACCTTGGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Coding sequence (CDS)

ATGGAAGAGAAGGGGGGTTTATTTGGATCCTTTGACTCGTTGTTAGGTCCTCCATGCGATTTGTCGACGAGGACCTTGGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Protein sequence

MEEKGGLFGSFDSLLGPPCDLSTRTLGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF

Homology

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BLAST of Carg23629 vs. NCBI nr
Match: XP_004154290.1 (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_008459248.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis melo] >XP_011649217.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_022943932.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022943933.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022948071.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022986654.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986655.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986656.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023007537.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023532551.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511843.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511844.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >KGN61761.1 hypothetical protein Csa_2G238770 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 6.2e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

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BLAST of Carg23629 vs. NCBI nr
Match: XP_022148517.1 (mitochondrial import receptor subunit TOM6 homolog [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKL+F
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLEF 54

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BLAST of Carg23629 vs. NCBI nr
Match: XP_012458101.1 (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimondii] >XP_016731270.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium hirsutum] >XP_017613195.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium arboreum] >KJB77892.1 hypothetical protein B456_012G163800 [Gossypium raimondii])

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 4  GMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of Carg23629 vs. NCBI nr
Match: XP_021284689.1 (mitochondrial import receptor subunit TOM6 homolog [Herrania umbratica] >XP_021284690.1 mitochondrial import receptor subunit TOM6 homolog [Herrania umbratica])

HSP 1 Score: 100.1 bits (248), Expect = 3.4e-18
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSD+KEELKL+F
Sbjct: 4  GMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDDKEELKLEF 54

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BLAST of Carg23629 vs. NCBI nr
Match: OWM83775.1 (hypothetical protein CDL15_Pgr004206 [Punica granatum])

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-18
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 27  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
           GMFMRKPDKA ALKQLR+HV MFGVWVAVIRVTPYVLHY SDEKEELKLDF
Sbjct: 112 GMFMRKPDKAEALKQLRTHVTMFGVWVAVIRVTPYVLHYFSDEKEELKLDF 162

[Close]

BLAST of Carg23629 vs. TAIR10
Match: AT1G49410.1 (translocase of the outer mitochondrial membrane 6)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-17
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 4  GMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

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BLAST of Carg23629 vs. Swiss-Prot
Match: sp|Q9XIA7|TOM6_ARATH (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM6 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-16
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 4  GMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

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BLAST of Carg23629 vs. TrEMBL
Match: tr|A0A1S3C9U8|A0A1S3C9U8_CUCME (mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LOC103498428 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

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BLAST of Carg23629 vs. TrEMBL
Match: tr|A0A0A0LP29|A0A0A0LP29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of Carg23629 vs. TrEMBL
Match: tr|A0A1U8MWT8|A0A1U8MWT8_GOSHI (mitochondrial import receptor subunit TOM6 homolog OS=Gossypium hirsutum OX=3635 GN=LOC107942142 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 4  GMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of Carg23629 vs. TrEMBL
Match: tr|A0A0D2S424|A0A0D2S424_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G163800 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 4  GMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of Carg23629 vs. TrEMBL
Match: tr|A0A2I0IU50|A0A2I0IU50_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032101 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-18
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 27  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
           GMFMRKPDKA ALKQLR+HV MFGVWVAVIRVTPYVLHY SDEKEELKLDF
Sbjct: 78  GMFMRKPDKAEALKQLRTHVTMFGVWVAVIRVTPYVLHYFSDEKEELKLDF 128

The following BLAST results are available for this feature:

BLAST of Carg23629 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154290.1	6.2e-20	100.00	PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] ...	[more]
XP_022148517.1	1.8e-19	98.04	mitochondrial import receptor subunit TOM6 homolog [Momordica charantia]	[more]
XP_012458101.1	2.6e-18	88.24	PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimond...	[more]
XP_021284689.1	3.4e-18	88.24	mitochondrial import receptor subunit TOM6 homolog [Herrania umbratica] >XP_0212...	[more]
OWM83775.1	4.4e-18	92.16	hypothetical protein CDL15_Pgr004206 [Punica granatum]	[more]

BLAST of Carg23629 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49410.1	2.0e-17	74.51	translocase of the outer mitochondrial membrane 6	[more]

BLAST of Carg23629 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XIA7\|TOM6_ARATH	3.7e-16	74.51	Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Carg23629 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9U8\|A0A1S3C9U8_CUCME	4.1e-20	100.00	mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0LP29\|A0A0A0LP29_CUCSA	4.1e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1	[more]
tr\|A0A1U8MWT8\|A0A1U8MWT8_GOSHI	1.7e-18	88.24	mitochondrial import receptor subunit TOM6 homolog OS=Gossypium hirsutum OX=3635...	[more]
tr\|A0A0D2S424\|A0A0D2S424_GOSRA	1.7e-18	88.24	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G163800 PE=4 ...	[more]
tr\|A0A2I0IU50\|A0A2I0IU50_PUNGR	2.9e-18	92.16	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032101 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005742	mitochondrial outer membrane translocase complex

Vocabulary: **INTERPRO**
Term	Definition
IPR034554	TOM6_plants

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23629-RA	Carg23629-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034554	Mitochondrial import receptor subunit TOM6 homologue, plants	PANTHER	PTHR35999	FAMILY NOT NAMED	coord: 26..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23629	Cla010292	Watermelon (97103) v1	carwmB0794
Carg23629	Csa2G238770	Cucumber (Chinese Long) v2	carcuB0812
Carg23629	MELO3C021943	Melon (DHL92) v3.5.1	carmeB0794
Carg23629	ClCG09G017780	Watermelon (Charleston Gray)	carwcgB0769
Carg23629	CSPI02G11860	Wild cucumber (PI 183967)	carcpiB0831
Carg23629	Cucsa.109920	Cucumber (Gy14) v1	carcgyB0907
Carg23629	CmaCh20G008750	Cucurbita maxima (Rimu)	carcmaB1104
Carg23629	CmoCh20G008820	Cucurbita moschata (Rifu)	carcmoB1073
Carg23629	Lsi10G003330	Bottle gourd (USVL1VR-Ls)	carlsiB731
Carg23629	CsGy2G011890	Cucumber (Gy14) v2	carcgybB0786
Carg23629	MELO3C021943.2	Melon (DHL92) v3.6.1	carmedB0806
Carg23629	CsaV3_2G014370	Cucumber (Chinese Long) v3	carcucB0835
Carg23629	Cla97C09G179170	Watermelon (97103) v2	carwmbB0833

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23629	Carg22967	Silver-seed gourd	carcarB619

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23629	Wax gourd	carwgoB0930
Carg23629	Wax gourd	carwgoB0931
Carg23629	Cucurbita maxima (Rimu)	carcmaB1105
Carg23629	Cucurbita moschata (Rifu)	carcmoB1074
Carg23629	Cucurbita pepo (Zucchini)	carcpeB1113
Carg23629	Cucurbita pepo (Zucchini)	carcpeB1114