CmaCh20G007340 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G007340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr20 : 3425689 .. 3426372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTCTTCCGCTACTTCTTCGCCGATTCAGCACGATCTTCACAGCGACGGCGACGAGCAATCGCCTCCTACTCTGGAAGTTCAAATGCGTTCTTACATACGTCTGATTTCAGGCGATTTAAACCAAATCGTCCTCGAAACTGCTCCGATTCCTCTGCGGAACAGTCTGTTTCCTCTGCCTCCGAACGCACGGAATATCGATCCGGTGTTCTTACAGATCTACATTGCGGAGATACTTTTATCGCTCAACATCGGCGCCGTAGCTTCCGAAGTCATCGCTGCACAGATCGCGTCGTTCACTCTCCAACTGGCGGAAGAACACAATGATACGAACGTTCACGTCGTCGCGGTGGTGGATAACGTCGTGGAGTCCAGGTTTTGGAGGTTGCAAGCGGTACCGGTGATGCAGGGCGGGAGAGCGGCGGAGGAGAGGAGGGAGGTTGTGGAGGAAGTAGCGGCGGCGAATGGGAGGTATAGAATGGAGAAAGTGGAGGAGAAGGAGGAGGAGGAAGTGGATTTAGGAAATTGCAGTATCTGTTTGGATGAGATGAAGTGCGAAGGGAGCGAGGTGATAAGAACTCCGTGCGGACATGTGTATCACGAATCATGCATCTTCAGGTGGCTTGATAATTCCGATTCTTGCCCCTTGTGTCGAACCCAATTTCCATTGATGGAGGACTGA

mRNA sequence

ATGATGTCTTCCGCTACTTCTTCGCCGATTCAGCACGATCTTCACAGCGACGGCGACGAGCAATCGCCTCCTACTCTGGAAGTTCAAATGCGTTCTTACATACGTCTGATTTCAGGCGATTTAAACCAAATCGTCCTCGAAACTGCTCCGATTCCTCTGCGGAACAGTCTGTTTCCTCTGCCTCCGAACGCACGGAATATCGATCCGGTGTTCTTACAGATCTACATTGCGGAGATACTTTTATCGCTCAACATCGGCGCCGTAGCTTCCGAAGTCATCGCTGCACAGATCGCGTCGTTCACTCTCCAACTGGCGGAAGAACACAATGATACGAACGTTCACGTCGTCGCGGTGGTGGATAACGTCGTGGAGTCCAGGTTTTGGAGGTTGCAAGCGGTACCGGTGATGCAGGGCGGGAGAGCGGCGGAGGAGAGGAGGGAGGTTGTGGAGGAAGTAGCGGCGGCGAATGGGAGGTATAGAATGGAGAAAGTGGAGGAGAAGGAGGAGGAGGAAGTGGATTTAGGAAATTGCAGTATCTGTTTGGATGAGATGAAGTGCGAAGGGAGCGAGGTGATAAGAACTCCGTGCGGACATGTGTATCACGAATCATGCATCTTCAGGTGGCTTGATAATTCCGATTCTTGCCCCTTGTGTCGAACCCAATTTCCATTGATGGAGGACTGA

Coding sequence (CDS)

ATGATGTCTTCCGCTACTTCTTCGCCGATTCAGCACGATCTTCACAGCGACGGCGACGAGCAATCGCCTCCTACTCTGGAAGTTCAAATGCGTTCTTACATACGTCTGATTTCAGGCGATTTAAACCAAATCGTCCTCGAAACTGCTCCGATTCCTCTGCGGAACAGTCTGTTTCCTCTGCCTCCGAACGCACGGAATATCGATCCGGTGTTCTTACAGATCTACATTGCGGAGATACTTTTATCGCTCAACATCGGCGCCGTAGCTTCCGAAGTCATCGCTGCACAGATCGCGTCGTTCACTCTCCAACTGGCGGAAGAACACAATGATACGAACGTTCACGTCGTCGCGGTGGTGGATAACGTCGTGGAGTCCAGGTTTTGGAGGTTGCAAGCGGTACCGGTGATGCAGGGCGGGAGAGCGGCGGAGGAGAGGAGGGAGGTTGTGGAGGAAGTAGCGGCGGCGAATGGGAGGTATAGAATGGAGAAAGTGGAGGAGAAGGAGGAGGAGGAAGTGGATTTAGGAAATTGCAGTATCTGTTTGGATGAGATGAAGTGCGAAGGGAGCGAGGTGATAAGAACTCCGTGCGGACATGTGTATCACGAATCATGCATCTTCAGGTGGCTTGATAATTCCGATTCTTGCCCCTTGTGTCGAACCCAATTTCCATTGATGGAGGACTGA

Protein sequence

MMSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLISGDLNQIVLETAPIPLRNSLFPLPPNARNIDPVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHVVAVVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLMED
Homology
[Close]
BLAST of CmaCh20G007340 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-09
Identity = 22/57 (38.60%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 167 KEEEEVDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFP 224
           K+  + ++  C++C+DE + +GS+V + PC HV+H+ C+  WL+  +SCP+CR + P
Sbjct: 206 KDMLKSEMNQCAVCMDEFE-DGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]
BLAST of CmaCh20G007340 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 

Query: 176 NCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFP 224
           NC +C DE +  GSE  + PC H+YH  CI  WL   +SCP+CR + P
Sbjct: 189 NCPVCKDEFEL-GSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

[Close]
BLAST of CmaCh20G007340 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 20/51 (39.22%), Postives = 35/51 (68.63%), Query Frame = 1 

Query: 173 DLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFP 224
           +   C++C+D+ + EG+E  + PC H+YH+ C+  WL+  +SCP+CR + P
Sbjct: 220 EFNQCAVCMDDFE-EGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELP 269

[Close]
BLAST of CmaCh20G007340 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1 

Query: 177 CSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLMED 228
           C +CL E + E + VI  PC H++H +CI  WL  ++SCPLCR + P  +D
Sbjct: 88  CPVCLLEFEAEET-VIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDD 137

[Close]
BLAST of CmaCh20G007340 vs. Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-08
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 

Query: 177 CSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLMED 228
           C +CL E + E   VI  PC H++H +CI  WL  ++SCPLCR + P  +D
Sbjct: 88  CPVCLLEFE-EEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDD 137

[Close]
BLAST of CmaCh20G007340 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 101/236 (42.80%), Postives = 144/236 (61.02%), Query Frame = 1 

Query: 2   MSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLIS-----GDLNQIVLETAPIPLRNS 61
           MS A S+PIQ+ L++ G   +   L+V +    ++IS     G  ++++ +T  IP  N+
Sbjct: 1   MSFAISNPIQYRLYASGTGGNG-VLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60

Query: 62  LFPLPPNARNID-PVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHV 121
           LF L  + R +  P+F   YI +IL SLNI   AS+ +A +IAS  LQ+ + +++TN H+
Sbjct: 61  LFYL--SLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHI 120

Query: 122 VAVVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGR----YRMEKVEEKEEEE 181
           +A VD      F RL  +P M GG A  E   V++E   A  R     R E++  +E+ E
Sbjct: 121 LAEVD------FIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKME 180

Query: 182 VDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLMED 228
            +LG+CSICLDE+ CE  EV+R PCGHVYHESCIF+WL+N +SCPLCR   PL  D
Sbjct: 181 -ELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRK--PLHHD 221

[Close]
BLAST of CmaCh20G007340 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 101/236 (42.80%), Postives = 144/236 (61.02%), Query Frame = 1 

Query: 2   MSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLIS-----GDLNQIVLETAPIPLRNS 61
           MS A S+PIQ+ L++ G   +   L+V +    ++IS     G  ++++ +T  IP  N+
Sbjct: 1   MSFAISNPIQYRLYASGTGGNG-VLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60

Query: 62  LFPLPPNARNID-PVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHV 121
           LF L  + R +  P+F   YI +IL SLNI   AS+ +A +IAS  LQ+ + +++TN H+
Sbjct: 61  LFYL--SLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHI 120

Query: 122 VAVVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGR----YRMEKVEEKEEEE 181
           +A VD      F RL  +P M GG A  E   V++E   A  R     R E++  +E+ E
Sbjct: 121 LAEVD------FIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKME 180

Query: 182 VDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLMED 228
            +LG+CSICLDE+ CE  EV+R PCGHVYHESCIF+WL+N +SCPLCR   PL  D
Sbjct: 181 -ELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRK--PLHHD 221

[Close]
BLAST of CmaCh20G007340 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-27
Identity = 94/227 (41.41%), Postives = 128/227 (56.39%), Query Frame = 1 

Query: 2   MSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLISGDL--NQIVLETAPIPLRNSLFP 61
           MS   SSPI + L+++G       LEVQ+    R IS      +I+ ET P P  N+LF 
Sbjct: 1   MSFEISSPIPYLLNANGFGNG--VLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFY 60

Query: 62  LPPNARNIDPVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHN--DTNVHVVA 121
           L  +     P+F   +I + L SLNI     E IA QIASF   +   +   ++N +V+A
Sbjct: 61  LSVHQLQ-HPLF---HIRQFLYSLNI---RRETIARQIASFVAHMCNGNTGWNSNFYVIA 120

Query: 122 VVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNC 181
            VD V   R  R++  P  +G R        VE         R+ K++ +EE+    G+C
Sbjct: 121 RVDLV---RVIRIEEQPRAEGWRGV-----AVE---------RLSKLKSEEEK----GDC 180

Query: 182 SICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPL 225
           S+CLDE+ CE  EVIR PCGHVYHESCIF+WL++S+SCPLCR+ FPL
Sbjct: 181 SVCLDELDCEKREVIRIPCGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

[Close]
BLAST of CmaCh20G007340 vs. TrEMBL
Match: A0A0A0LW68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573640 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 74/199 (37.19%), Postives = 106/199 (53.27%), Query Frame = 1 

Query: 26  LEVQMRSYIRLISGDLNQIVLETAPIPLR--NSLFPLPPNARNI--DPVFLQIYIAEILL 85
           LE+Q R    L+     QI+ +T PI L   N+ FPL  N  +   +P     Y+A++  
Sbjct: 27  LEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNFFPLHFNFFHSYGEPSSFTFYVAQLFS 86

Query: 86  SLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHVVAVVDNVVESRFWRLQAVPVMQGGRA 145
           SLNI ++ASE +A  I     Q+A E+++ + H+  ++D +  +    L          +
Sbjct: 87  SLNINSIASEAMARNIFLIANQVANENSNASFHIAVIIDFINFTWMCPL----------S 146

Query: 146 AEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNCSICLDEMKCEGSEVI-RTPCGHVY 205
              R+    EV+          VE+K+    DLG+CSICLDE+     EV+ +  CGHVY
Sbjct: 147 FSTRQLTGNEVSM---------VEQKKIGN-DLGDCSICLDELSPSNREVVLKISCGHVY 205

Query: 206 HESCIFRWLDNSDSCPLCR 220
           HE CI RWLDNSDSCPLCR
Sbjct: 207 HELCILRWLDNSDSCPLCR 205

[Close]
BLAST of CmaCh20G007340 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 70/230 (30.43%), Postives = 112/230 (48.70%), Query Frame = 1 

Query: 2   MSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLISGDLNQIVLETAPIPLRNSLFPLP 61
           MSS T+  +   + S         +E+++R + +L+S   NQ + +T P  + N+LF  P
Sbjct: 1   MSSTTNLSLDCCVRSIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 60

Query: 62  -PNARNIDPVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHVVAVVD 121
            P     +P     ++ + L   +     S  I   I+SF LQLA  + + N H++A VD
Sbjct: 61  LPELELENPSLFHDFLLQFLSPAD-----SAAIFHNISSFALQLAAGNLNLNFHLIATVD 120

Query: 122 NV----VESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGN 181
            +    +       Q  P ++ G  A     V+E       R   EK ++    E   G 
Sbjct: 121 LLYTISINLNLNPPQYSPPVRNGVPAS----VME-------RLMNEKYDDGNGGEGMGGQ 180

Query: 182 CSICLDEMKCEGSE----VIRTPCGHVYHESCIFRWLDNSDSCPLCRTQF 223
           C +C +++ CE  E      R PCGHVYH+SCI +WL+ ++SCPLCR++F
Sbjct: 181 CCVCYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSEF 214

[Close]
BLAST of CmaCh20G007340 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-10
Identity = 22/57 (38.60%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 167 KEEEEVDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFP 224
           K+  + ++  C++C+DE + +GS+V + PC HV+H+ C+  WL+  +SCP+CR + P
Sbjct: 206 KDMLKSEMNQCAVCMDEFE-DGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]
BLAST of CmaCh20G007340 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-10
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 

Query: 176 NCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFP 224
           NC +C DE +  GSE  + PC H+YH  CI  WL   +SCP+CR + P
Sbjct: 189 NCPVCKDEFEL-GSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

[Close]
BLAST of CmaCh20G007340 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 21/53 (39.62%), Postives = 33/53 (62.26%), Query Frame = 1 

Query: 173 DLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLM 226
           D+  C++C++E    G +    PC H+YH+ CI  WL  ++SCP+CR   PL+
Sbjct: 220 DMSQCTVCMEEF-IVGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDLPLV 271

[Close]
BLAST of CmaCh20G007340 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1 

Query: 164 VEEKEEEEVDLGN--CSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQ 223
           V E   EE+D GN  C++C DEM  E  +V R PC H YH  CI  WL   ++CP+CR +
Sbjct: 320 VVELAVEELDKGNNVCAVCKDEMLVE-EKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYE 379

[Close]
BLAST of CmaCh20G007340 vs. TAIR10
Match: AT1G18770.1 (AT1G18770.1 RING/U-box superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-09
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 1 

Query: 177 CSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFP 224
           C ICL+E   EG  V+  PCGH + + C+ +W + + SCPLCR + P
Sbjct: 59  CIICLEEFS-EGRRVVTLPCGHDFDDECVLKWFETNHSCPLCRFKLP 104

[Close]
BLAST of CmaCh20G007340 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 101/236 (42.80%), Postives = 144/236 (61.02%), Query Frame = 1 

Query: 2   MSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLIS-----GDLNQIVLETAPIPLRNS 61
           MS A S+PIQ+ L++ G   +   L+V +    ++IS     G  ++++ +T  IP  N+
Sbjct: 1   MSFAISNPIQYRLYASGTGGNG-VLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60

Query: 62  LFPLPPNARNID-PVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHV 121
           LF L  + R +  P+F   YI +IL SLNI   AS+ +A +IAS  LQ+ + +++TN H+
Sbjct: 61  LFYL--SLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHI 120

Query: 122 VAVVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGR----YRMEKVEEKEEEE 181
           +A VD      F RL  +P M GG A  E   V++E   A  R     R E++  +E+ E
Sbjct: 121 LAEVD------FIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKME 180

Query: 182 VDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLMED 228
            +LG+CSICLDE+ CE  EV+R PCGHVYHESCIF+WL+N +SCPLCR   PL  D
Sbjct: 181 -ELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRK--PLHHD 221

[Close]
BLAST of CmaCh20G007340 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 101/236 (42.80%), Postives = 144/236 (61.02%), Query Frame = 1 

Query: 2   MSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLIS-----GDLNQIVLETAPIPLRNS 61
           MS A S+PIQ+ L++ G   +   L+V +    ++IS     G  ++++ +T  IP  N+
Sbjct: 1   MSFAISNPIQYRLYASGTGGNG-VLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNA 60

Query: 62  LFPLPPNARNID-PVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHV 121
           LF L  + R +  P+F   YI +IL SLNI   AS+ +A +IAS  LQ+ + +++TN H+
Sbjct: 61  LFYL--SLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHI 120

Query: 122 VAVVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGR----YRMEKVEEKEEEE 181
           +A VD      F RL  +P M GG A  E   V++E   A  R     R E++  +E+ E
Sbjct: 121 LAEVD------FIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKME 180

Query: 182 VDLGNCSICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPLMED 228
            +LG+CSICLDE+ CE  EV+R PCGHVYHESCIF+WL+N +SCPLCR   PL  D
Sbjct: 181 -ELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRK--PLHHD 221

[Close]
BLAST of CmaCh20G007340 vs. NCBI nr
Match: gi|778697402|ref|XP_011654314.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 94/227 (41.41%), Postives = 128/227 (56.39%), Query Frame = 1 

Query: 2   MSSATSSPIQHDLHSDGDEQSPPTLEVQMRSYIRLISGDL--NQIVLETAPIPLRNSLFP 61
           MS   SSPI + L+++G       LEVQ+    R IS      +I+ ET P P  N+LF 
Sbjct: 1   MSFEISSPIPYLLNANGFGNG--VLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFY 60

Query: 62  LPPNARNIDPVFLQIYIAEILLSLNIGAVASEVIAAQIASFTLQLAEEHN--DTNVHVVA 121
           L  +     P+F   +I + L SLNI     E IA QIASF   +   +   ++N +V+A
Sbjct: 61  LSVHQLQ-HPLF---HIRQFLYSLNI---RRETIARQIASFVAHMCNGNTGWNSNFYVIA 120

Query: 122 VVDNVVESRFWRLQAVPVMQGGRAAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNC 181
            VD V   R  R++  P  +G R        VE         R+ K++ +EE+    G+C
Sbjct: 121 RVDLV---RVIRIEEQPRAEGWRGV-----AVE---------RLSKLKSEEEK----GDC 180

Query: 182 SICLDEMKCEGSEVIRTPCGHVYHESCIFRWLDNSDSCPLCRTQFPL 225
           S+CLDE+ CE  EVIR PCGHVYHESCIF+WL++S+SCPLCR+ FPL
Sbjct: 181 SVCLDELDCEKREVIRIPCGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

[Close]
BLAST of CmaCh20G007340 vs. NCBI nr
Match: gi|659100547|ref|XP_008451147.1| (PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 8.4e-21
Identity = 73/208 (35.10%), Postives = 113/208 (54.33%), Query Frame = 1 

Query: 26  LEVQMRSYIRLISGDLNQIVLETAPIPLRN--SLFPLPPNARN--IDPVFLQIYIAEILL 85
           LE+Q R    L+    +Q + +T+ I + N  + FPLP N  +   +P     Y+ ++L 
Sbjct: 28  LEIQRRFSHSLMFDFPHQTIHQTSSISIDNYDNYFPLPLNFFHNYYEPSSFPSYVTQLLS 87

Query: 86  SLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHVVAVVDNVVESRFWRLQAVPVMQGGRA 145
           SL+I +V SEVIA +I      +A+E+++ + H+V  VD +   +F  + ++ ++     
Sbjct: 88  SLDINSVNSEVIAREIVLIANHVAKENSNASFHIVVTVDFI---QFTWMHSLSLLTQQST 147

Query: 146 AEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNCSICLDEMKCEGSEV-IRTPCGHVY 205
             E R V        G   +EK         DL +CSICL+E  C   ++ ++ PCGHVY
Sbjct: 148 RNEVRMV--------GWKEIEK---------DLDDCSICLEEFSCNNRKIGLKIPCGHVY 207

Query: 206 HESCIFRWLDNSDSCPLCRTQ-FPLMED 228
           HESCI +WL+NS SCPLCR   FP  E+
Sbjct: 208 HESCILKWLENSHSCPLCRRLIFPRFEN 215

[Close]
BLAST of CmaCh20G007340 vs. NCBI nr
Match: gi|700211049|gb|KGN66145.1| (hypothetical protein Csa_1G573640 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 74/199 (37.19%), Postives = 106/199 (53.27%), Query Frame = 1 

Query: 26  LEVQMRSYIRLISGDLNQIVLETAPIPLR--NSLFPLPPNARNI--DPVFLQIYIAEILL 85
           LE+Q R    L+     QI+ +T PI L   N+ FPL  N  +   +P     Y+A++  
Sbjct: 27  LEIQRRISHSLMFNFPPQIIHQTLPILLDYDNNFFPLHFNFFHSYGEPSSFTFYVAQLFS 86

Query: 86  SLNIGAVASEVIAAQIASFTLQLAEEHNDTNVHVVAVVDNVVESRFWRLQAVPVMQGGRA 145
           SLNI ++ASE +A  I     Q+A E+++ + H+  ++D +  +    L          +
Sbjct: 87  SLNINSIASEAMARNIFLIANQVANENSNASFHIAVIIDFINFTWMCPL----------S 146

Query: 146 AEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNCSICLDEMKCEGSEVI-RTPCGHVY 205
              R+    EV+          VE+K+    DLG+CSICLDE+     EV+ +  CGHVY
Sbjct: 147 FSTRQLTGNEVSM---------VEQKKIGN-DLGDCSICLDELSPSNREVVLKISCGHVY 205

Query: 206 HESCIFRWLDNSDSCPLCR 220
           HE CI RWLDNSDSCPLCR
Sbjct: 207 HELCILRWLDNSDSCPLCR 205

The following BLAST results are available for this feature:
BLAST of CmaCh20G007340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNG1L_ARATH7.4e-0938.60E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RHC1A_ARATH1.3e-0847.92Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RING1_GOSHI1.3e-0839.22E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN181_MOUSE4.8e-0845.10E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1[more]
RN181_RAT6.3e-0845.10E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1[more]
BLAST of CmaCh20G007340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K696_CUCSA2.0e-3242.80Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA2.0e-3242.80Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA7.2e-2741.41Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
A0A0A0LW68_CUCSA1.1e-1937.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573640 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA1.1e-1630.43Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
BLAST of CmaCh20G007340 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.14.2e-1038.60 RING/U-box superfamily protein[more]
AT2G40830.27.1e-1047.92 RING-H2 finger C1A[more]
AT1G60360.11.2e-0939.62 RING/U-box superfamily protein[more]
AT3G02340.11.6e-0946.77 RING/U-box superfamily protein[more]
AT1G18770.13.5e-0944.68 RING/U-box superfamily protein[more]
BLAST of CmaCh20G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454422|ref|XP_004144954.1|2.8e-3242.80PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus][more]
gi|778730084|ref|XP_011659694.1|2.8e-3242.80PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus][more]
gi|778697402|ref|XP_011654314.1|1.0e-2641.41PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus][more]
gi|659100547|ref|XP_008451147.1|8.4e-2135.10PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Cucumis melo][more]
gi|700211049|gb|KGN66145.1|1.6e-1937.19hypothetical protein Csa_1G573640 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G007340.1CmaCh20G007340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..219
score: 7.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 177..218
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 177..219
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 176..220
score: 3.6
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 102..223
score: 1.7E-16coord: 1..42
score: 1.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 161..224
score: 5.82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G007340Csa7G025210Cucumber (Chinese Long) v2cmacuB576
CmaCh20G007340Cp4.1LG16g03320Cucurbita pepo (Zucchini)cmacpeB565
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G007340Cucumber (Chinese Long) v3cmacucB0687
CmaCh20G007340Watermelon (97103) v2cmawmbB570
CmaCh20G007340Wax gourdcmawgoB0677
CmaCh20G007340Cucurbita maxima (Rimu)cmacmaB155
CmaCh20G007340Cucurbita maxima (Rimu)cmacmaB444
CmaCh20G007340Cucurbita maxima (Rimu)cmacmaB445
CmaCh20G007340Cucurbita maxima (Rimu)cmacmaB478
CmaCh20G007340Cucumber (Gy14) v1cgycmaB1028
CmaCh20G007340Cucurbita moschata (Rifu)cmacmoB542
CmaCh20G007340Cucurbita moschata (Rifu)cmacmoB548
CmaCh20G007340Cucurbita moschata (Rifu)cmacmoB551
CmaCh20G007340Cucurbita moschata (Rifu)cmacmoB562
CmaCh20G007340Wild cucumber (PI 183967)cmacpiB580
CmaCh20G007340Cucumber (Chinese Long) v2cmacuB573
CmaCh20G007340Melon (DHL92) v3.5.1cmameB510
CmaCh20G007340Melon (DHL92) v3.5.1cmameB511
CmaCh20G007340Watermelon (Charleston Gray)cmawcgB483
CmaCh20G007340Watermelon (97103) v1cmawmB526
CmaCh20G007340Watermelon (97103) v1cmawmB527
CmaCh20G007340Cucurbita pepo (Zucchini)cmacpeB557
CmaCh20G007340Cucurbita pepo (Zucchini)cmacpeB560
CmaCh20G007340Cucurbita pepo (Zucchini)cmacpeB575
CmaCh20G007340Cucurbita pepo (Zucchini)cmacpeB579
CmaCh20G007340Bottle gourd (USVL1VR-Ls)cmalsiB514
CmaCh20G007340Bottle gourd (USVL1VR-Ls)cmalsiB517
CmaCh20G007340Cucumber (Gy14) v2cgybcmaB807
CmaCh20G007340Cucumber (Gy14) v2cgybcmaB956
CmaCh20G007340Melon (DHL92) v3.6.1cmamedB587
CmaCh20G007340Silver-seed gourdcarcmaB0188
CmaCh20G007340Silver-seed gourdcarcmaB0486
CmaCh20G007340Silver-seed gourdcarcmaB0564
CmaCh20G007340Silver-seed gourdcarcmaB1122