CmaCh20G003360 (gene) Cucurbita maxima (Rimu)

NameCmaCh20G003360
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
LocationCma_Chr20 : 1646167 .. 1649445 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGCTGTCATTGCGACCACTCACTCCGGCTTCCTACCATCACCATCGCTTAATCCTCTGCCAGAAGATTGGGGTTTCTTTTCTCCGACCAACAATTCAGTTCAGTTCAATTCGATTCGCCGCTGGTTGAGGGCTGGCTCTCTGTAATTTTCTCTCCATCTCTTCCGCCTTTTGTTCGTTTCATTTTCTGATGGTTTTGTACTGTTATTCGAATTTGGATTGCGTTCAAAATTGATGCGGTTGAAACCCTAGTGTTCTGGTTTTCTTTTGATAATTTATAGGCGGTGGACCGATTGATTGTTTCATTTCTCGCTTTACTTCATTCGGTTTTGGATTTTTCTCCACTCGGTTGAGATACCGTGACGCTTAAGTTCGCTGGTTATTCGAAATTTTAGTTTGAATTTAGTGATTTGGATTAGAAGTTCGAAATGATTTGTGCTCCGGGCTTTACTCCGTTAACGAAATTTGGATTTTCGTTTTCTTTATCTTCTGGACTGAAATCTAAGAGGCTTGGGTTTTCTGCTCCCCAATTGTGTAGTCGTTCGCCGGTAAATTTTTGCTTTATTGTTTCTCGTATTACTTGCAATCACCAGAATTCTACTTTCTCTGTTTCAAGAGCTGGTAAGTTTCGGGACCTAAGATTGTTCAAATCGGTTGAGTTGGACCAGTTCATCACGAGTGATGACGAAGATGAAATGGGAGATGGGTTTTTTGAGGCAATTGAGGAATTGGAACGAATGACGAGGGATCCATCGGATGTTCTTGAAGAAATGAACGACCGCTTATCGGCCAGGGAATTTCAGCTAGTGCTGGTGTACTTCTCTCAAGAAGGGAGGGATTCGTGGTGTGCTCTTGAGGTTTTTGAGTGGCTCCAAAAGGAAAATCGGGTCGACAAGGAGACCATGGAGCTGATGGTGTCTATAATGTGTAGTTGGATCAAGAAGTTGGTCGAGGGACAGCATAACGTCGGAGATGTGGTTGACCTTCTCGTGGATATGGATTGTGTAGGTTTGAAGCCCCATTTTAGCATGATAGAAAAGGTCATCTCTTTGTATTGGGATATGGGTGAGAAGGAAAAAGCAATTTCGTTCGTGAAGGAGGTCTTGGGACGCAAACTTGATTTTATGAAGGACAATTGGGAAGGGCATAAAGGAGGACCGAGTGGATATCTCGCATGGAAGATGATGGTAAGCCTTTAGCTAATCAGGTTTTCATATCTTTAGCTTTTAACCTTGCTCAAGAGTCAAGTCAACCATAGTATTCTTTTGCTGTGTCTCTTTATTACATTGAAAATTCATATCTGAAATGTAACTATCTTCAATAGCCGTTTACTAACTTTGGATGTATAATTTTGAATCCTGAAGTTCCTAATTGTAGAGATGCCTTACTCTGCCTCCTTTATCTTATTGGGTTTTGATTATGTGCTATAGAGTGTCAGGTTTTTGTTGAGGTGACTCTGGTCAAGGTAGTAACGAATATTTTCTGGCGTCATGTTTTTCTAATCACAATTGAAGGCGTTCAGGAAGAACTGTGCAGGGTTGGCTGTACTTTTGGGATATATGGTTAAGCTGCGTTTTAATGTGATTAAGCATGGTTGAATCTATTGTCATGTTAGTTTTGGACATACTGAAGCACATTGACTTCCTTTCAATGTTATTATTTGTGGCGTATTAGACTTCCATATCGTAGCGTAACTTATGGTATGTTCTTGCTTATATTAGTAGCACTCCGACATATTTCATTTATATTTGAACCAAATTGAATGCTGTATGAGACCAAGTTTATCCAATCTTGTAACTAGAACACCGTGCTGCTACTTTTGTTCGCTTCACCAGTAATGGTAGTGGATTAGTTGCCTGAGGATTATATATAAGTATTTTCACATTGTTATGTCTGTTCAGCACGACCCCAAGTGAAAATTCAATTGCCGATAATCTTGGAAATCAATTCTTGTAGGTTGATGGTGACTATAGGGGTGCAGTGAAAATGGTGCTGAATCTCAGAGAATCTGGATTAAAGCCAGAGGTTTACTGCTTTCTTATTGCCATGACTGCCGTGGTTAAAGAGCTGAATGAATTTGCAAAAGCTCTTCGCAAACTGAAAAGTTACGCAAGAGATGGGATGGTGGCTGAACTCGATAAAGACAATGTCGAACTTGTCAAGAGGTATCAGTCAGAGCTTCTAGCTGATGGAGTACGGTTATCCAACTGGGTGCTTGACGAGGGAAGCTCTTCGAGTCACGGGGTGGTTCATGAGAGACTCCTTGCAATGTACATTTGTGCTGGGCAAGGACTAGAGGCAGAGCGGCAGCTTTGGGAAATGAAGCTTGTAGGTAAGGAGGCTGATGCTGATCTCTACGATATCGTGCTAGCCATATGTGCTTCACAGAAGGAGACGAGAGCAATGAACCGGTTGCTTTCCAGGATTGAGATTACGAGTCCCCGGCTTAAGAAGAAGAGTTTAACATGGCTACTAAGGGGTTACATAAAAGGAGGTCATTTCCGTGATGCTGCAGAAACATTAGTAAAAATGGTCAATTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCCGTGCTGCAAGGGCTTAGAAAACGGATTCGGGAACCTGAAAACGTCGAGACTTACCTCGATCTCTGCAAGTGTCTCTCTGATGCTAATCTAATTGGACCCAGTCTTGTATATTTGCACTTACAGAAGTACAAGCTTTGGGTCATTAAAATGCTTTGAAGAAGCTTCTCAATACCTCTCTGCACAGGCAGCTAATAAAGTGGAGCAGAAATCATTTATACAGCACCAGCACTTTTTTGGGTGCTTTTATATGTTGATTTTGTATAGTTTCAGGCAGGTGACTCTAGAAGCTCTTTAAGCCGACCCTGAAGAGGAATACTTGTGTATATCTGTATATATATAATCAGCTATTGTGCACAGAGAACCAATGTTACAGTGTATAGATTGTATAAGGAAATTACATATTCTGATATTCTCCAAGCAGACTGCTGGCAGATATTGTCTGTTTTGTCTTATTATGTATTGCCGTCAGACTTACGGTTTTAAAACGTGTTTGGTAGGAAGAGGTTTCCACACTCTTGGAATGTTTTGTTTCCCTCTCCTACCAATGTGAGATCTCACAATCCACTCCCTTAGGGGCTCAACATCTTTGCTGGCATACCGTCCGTTATTTGGCTCTGATACCATTTGTAACAGATCAAGCACACTGCTAGTAGATATTGTTGTTCCACTATGTATCGTCGTCAGACTCATGGTTATAAAACGCG

mRNA sequence

AAACGCTGTCATTGCGACCACTCACTCCGGCTTCCTACCATCACCATCGCTTAATCCTCTGCCAGAAGATTGGGGTTTCTTTTCTCCGACCAACAATTCAGTTCAGTTCAATTCGATTCGCCGCTGGTTGAGGGCTGGCTCTCTGTAATTTTCTCTCCATCTCTTCCGCCTTTTGTTCGTTTCATTTTCTGATGGTTTTGTACTGTTATTCGAATTTGGATTGCGTTCAAAATTGATGCGGTTGAAACCCTAGTGTTCTGGTTTTCTTTTGATAATTTATAGGCGGTGGACCGATTGATTGTTTCATTTCTCGCTTTACTTCATTCGGTTTTGGATTTTTCTCCACTCGGTTGAGATACCGTGACGCTTAAGTTCGCTGGTTATTCGAAATTTTAGTTTGAATTTAGTGATTTGGATTAGAAGTTCGAAATGATTTGTGCTCCGGGCTTTACTCCGTTAACGAAATTTGGATTTTCGTTTTCTTTATCTTCTGGACTGAAATCTAAGAGGCTTGGGTTTTCTGCTCCCCAATTGTGTAGTCGTTCGCCGGTAAATTTTTGCTTTATTGTTTCTCGTATTACTTGCAATCACCAGAATTCTACTTTCTCTGTTTCAAGAGCTGGTAAGTTTCGGGACCTAAGATTGTTCAAATCGGTTGAGTTGGACCAGTTCATCACGAGTGATGACGAAGATGAAATGGGAGATGGGTTTTTTGAGGCAATTGAGGAATTGGAACGAATGACGAGGGATCCATCGGATGTTCTTGAAGAAATGAACGACCGCTTATCGGCCAGGGAATTTCAGCTAGTGCTGGTGTACTTCTCTCAAGAAGGGAGGGATTCGTGGTGTGCTCTTGAGGTTTTTGAGTGGCTCCAAAAGGAAAATCGGGTCGACAAGGAGACCATGGAGCTGATGGTGTCTATAATGTGTAGTTGGATCAAGAAGTTGGTCGAGGGACAGCATAACGTCGGAGATGTGGTTGACCTTCTCGTGGATATGGATTGTGTAGGTTTGAAGCCCCATTTTAGCATGATAGAAAAGGTCATCTCTTTGTATTGGGATATGGGTGAGAAGGAAAAAGCAATTTCGTTCGTGAAGGAGGTCTTGGGACGCAAACTTGATTTTATGAAGGACAATTGGGAAGGGCATAAAGGAGGACCGAGTGGATATCTCGCATGGAAGATGATGGTTGATGGTGACTATAGGGGTGCAGTGAAAATGGTGCTGAATCTCAGAGAATCTGGATTAAAGCCAGAGGTTTACTGCTTTCTTATTGCCATGACTGCCGTGGTTAAAGAGCTGAATGAATTTGCAAAAGCTCTTCGCAAACTGAAAAGTTACGCAAGAGATGGGATGGTGGCTGAACTCGATAAAGACAATGTCGAACTTGTCAAGAGGTATCAGTCAGAGCTTCTAGCTGATGGAGTACGGTTATCCAACTGGGTGCTTGACGAGGGAAGCTCTTCGAGTCACGGGGTGGTTCATGAGAGACTCCTTGCAATGTACATTTGTGCTGGGCAAGGACTAGAGGCAGAGCGGCAGCTTTGGGAAATGAAGCTTGTAGGTAAGGAGGCTGATGCTGATCTCTACGATATCGTGCTAGCCATATGTGCTTCACAGAAGGAGACGAGAGCAATGAACCGGTTGCTTTCCAGGATTGAGATTACGAGTCCCCGGCTTAAGAAGAAGAGTTTAACATGGCTACTAAGGGGTTACATAAAAGGAGGTCATTTCCGTGATGCTGCAGAAACATTAGTAAAAATGGTCAATTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCCGTGCTGCAAGGGCTTAGAAAACGGATTCGGGAACCTGAAAACGTCGAGACTTACCTCGATCTCTGCAAGTGTCTCTCTGATGCTAATCTAATTGGACCCAGTCTTGTATATTTGCACTTACAGAAGTACAAGCTTTGGGTCATTAAAATGCTTTGAAGAAGCTTCTCAATACCTCTCTGCACAGGCAGCTAATAAAGTGGAGCAGAAATCATTTATACAGCACCAGCACTTTTTTGGGTGCTTTTATATGTTGATTTTGTATAGTTTCAGGCAGGTGACTCTAGAAGCTCTTTAAGCCGACCCTGAAGAGGAATACTTGTGTATATCTGTATATATATAATCAGCTATTGTGCACAGAGAACCAATGTTACAGTGTATAGATTGTATAAGGAAATTACATATTCTGATATTCTCCAAGCAGACTGCTGGCAGATATTGTCTGTTTTGTCTTATTATGTATTGCCGTCAGACTTACGGTTTTAAAACGTGTTTGGTAGGAAGAGGTTTCCACACTCTTGGAATGTTTTGTTTCCCTCTCCTACCAATGTGAGATCTCACAATCCACTCCCTTAGGGGCTCAACATCTTTGCTGGCATACCGTCCGTTATTTGGCTCTGATACCATTTGTAACAGATCAAGCACACTGCTAGTAGATATTGTTGTTCCACTATGTATCGTCGTCAGACTCATGGTTATAAAACGCG

Coding sequence (CDS)

ATGATTTGTGCTCCGGGCTTTACTCCGTTAACGAAATTTGGATTTTCGTTTTCTTTATCTTCTGGACTGAAATCTAAGAGGCTTGGGTTTTCTGCTCCCCAATTGTGTAGTCGTTCGCCGGTAAATTTTTGCTTTATTGTTTCTCGTATTACTTGCAATCACCAGAATTCTACTTTCTCTGTTTCAAGAGCTGGTAAGTTTCGGGACCTAAGATTGTTCAAATCGGTTGAGTTGGACCAGTTCATCACGAGTGATGACGAAGATGAAATGGGAGATGGGTTTTTTGAGGCAATTGAGGAATTGGAACGAATGACGAGGGATCCATCGGATGTTCTTGAAGAAATGAACGACCGCTTATCGGCCAGGGAATTTCAGCTAGTGCTGGTGTACTTCTCTCAAGAAGGGAGGGATTCGTGGTGTGCTCTTGAGGTTTTTGAGTGGCTCCAAAAGGAAAATCGGGTCGACAAGGAGACCATGGAGCTGATGGTGTCTATAATGTGTAGTTGGATCAAGAAGTTGGTCGAGGGACAGCATAACGTCGGAGATGTGGTTGACCTTCTCGTGGATATGGATTGTGTAGGTTTGAAGCCCCATTTTAGCATGATAGAAAAGGTCATCTCTTTGTATTGGGATATGGGTGAGAAGGAAAAAGCAATTTCGTTCGTGAAGGAGGTCTTGGGACGCAAACTTGATTTTATGAAGGACAATTGGGAAGGGCATAAAGGAGGACCGAGTGGATATCTCGCATGGAAGATGATGGTTGATGGTGACTATAGGGGTGCAGTGAAAATGGTGCTGAATCTCAGAGAATCTGGATTAAAGCCAGAGGTTTACTGCTTTCTTATTGCCATGACTGCCGTGGTTAAAGAGCTGAATGAATTTGCAAAAGCTCTTCGCAAACTGAAAAGTTACGCAAGAGATGGGATGGTGGCTGAACTCGATAAAGACAATGTCGAACTTGTCAAGAGGTATCAGTCAGAGCTTCTAGCTGATGGAGTACGGTTATCCAACTGGGTGCTTGACGAGGGAAGCTCTTCGAGTCACGGGGTGGTTCATGAGAGACTCCTTGCAATGTACATTTGTGCTGGGCAAGGACTAGAGGCAGAGCGGCAGCTTTGGGAAATGAAGCTTGTAGGTAAGGAGGCTGATGCTGATCTCTACGATATCGTGCTAGCCATATGTGCTTCACAGAAGGAGACGAGAGCAATGAACCGGTTGCTTTCCAGGATTGAGATTACGAGTCCCCGGCTTAAGAAGAAGAGTTTAACATGGCTACTAAGGGGTTACATAAAAGGAGGTCATTTCCGTGATGCTGCAGAAACATTAGTAAAAATGGTCAATTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCCGTGCTGCAAGGGCTTAGAAAACGGATTCGGGAACCTGAAAACGTCGAGACTTACCTCGATCTCTGCAAGTGTCTCTCTGATGCTAATCTAATTGGACCCAGTCTTGTATATTTGCACTTACAGAAGTACAAGCTTTGGGTCATTAAAATGCTTTGA

Protein sequence

MICAPGFTPLTKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFSVSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNVGDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRKLKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYICAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKKSLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDLCKCLSDANLIGPSLVYLHLQKYKLWVIKML
BLAST of CmaCh20G003360 vs. Swiss-Prot
Match: PP176_ARATH (Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana GN=At2g30100 PE=2 SV=2)

HSP 1 Score: 600.9 bits (1548), Expect = 1.3e-170
Identity = 297/474 (62.66%), Postives = 376/474 (79.32%), Query Frame = 1

Query: 48  SRITCNHQNSTFSVSRAGKFRDLRLFKSVELDQFITSDDED----EMGDGFFEAIEELER 107
           SRI CN + +      AGKFR++ L +SVELDQFITS++E+    E+G+GFFEAIEELER
Sbjct: 34  SRIICNLKLNY----SAGKFREMGLSRSVELDQFITSEEEEGEAEEIGEGFFEAIEELER 93

Query: 108 MTRDPSDVLEEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMV 167
           MTR+PSD+LEEMN RLS+RE QL+LVYF+QEGRDSWC LEVFEWL+KENRVD+E MELMV
Sbjct: 94  MTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCTLEVFEWLKKENRVDEEIMELMV 153

Query: 168 SIMCSWIKKLVEGQHNVGDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVK 227
           SIMC W+KKL+E + N   V DLL++MDCVGLKP FSM++KVI+LY +MG+KE A+ FVK
Sbjct: 154 SIMCGWVKKLIEDECNAHQVFDLLIEMDCVGLKPGFSMMDKVIALYCEMGKKESAVLFVK 213

Query: 228 EVLGRKLDFMKD-----NWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVY 287
           EVL R+  F          EG KGGP GYLAWK MVDGDYR AV MV+ LR SGLKPE Y
Sbjct: 214 EVLRRRDGFGYSVVGGGGSEGRKGGPVGYLAWKFMVDGDYRKAVDMVMELRLSGLKPEAY 273

Query: 288 CFLIAMTAVVKELNEFAKALRKLKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNW 347
            +LIAMTA+VKELN   K LR+LK +AR G VAE+D  +  L+++YQSE L+ G++L+ W
Sbjct: 274 SYLIAMTAIVKELNSLGKTLRELKRFARAGFVAEIDDHDRVLIEKYQSETLSRGLQLATW 333

Query: 348 VLDEGSSSSH--GVVHERLLAMYICAGQGLEAERQLWEMKLVGKEADADLYDIVLAICAS 407
            ++EG  +    GVVHERLLAMYICAG+G EAE+QLW+MKL G+E +ADL+DIV+AICAS
Sbjct: 334 AVEEGQENDSIIGVVHERLLAMYICAGRGPEAEKQLWKMKLAGREPEADLHDIVMAICAS 393

Query: 408 QKETRAMNRLLSRIEITSPRLKKKSLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLD 467
           QKE  A++RLL+R+E    + KKK+L+WLLRGY+KGGHF +AAETLV M++ G  PEY+D
Sbjct: 394 QKEVNAVSRLLTRVEFMGSQRKKKTLSWLLRGYVKGGHFEEAAETLVSMIDSGLHPEYID 453

Query: 468 RVAVLQGLRKRIREPENVETYLDLCKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           RVAV+QG+ ++I+ P +VE Y+ LCK L DA L+GP LVY+++ KYKLW++KM+
Sbjct: 454 RVAVMQGMTRKIQRPRDVEAYMSLCKRLFDAGLVGPCLVYMYIDKYKLWIVKMM 503

BLAST of CmaCh20G003360 vs. TrEMBL
Match: A0A0A0KC35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182120 PE=4 SV=1)

HSP 1 Score: 902.5 bits (2331), Expect = 2.3e-259
Identity = 450/510 (88.24%), Postives = 480/510 (94.12%), Query Frame = 1

Query: 1   MICAPGFTPLTKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFS 60
           MICA GFTPLT+FGFSFSLSS L+S+R GFS P+L         ++VS I+CN+Q+STFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRL---------YMVSPISCNYQDSTFS 60

Query: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120
           VSRA KFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVLEEMNDRLS
Sbjct: 61  VSRAAKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180
           ARE QLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG+HNV
Sbjct: 121 AREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEKVISLYW+MGEKEKA+ FVKEVLGR L FMKD+WEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGH 240

Query: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRK 300
           KGGPSGYLAWKMMVDGDYRGAVKMVL+LRESGL+PEVY +LIAMTAVVKELNEFAKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYI 360
           LK YARDG VAELDK+NVELV +YQ+ELLADGV+LSNWVL+EGSSS  GVVHERLLAMYI
Sbjct: 301 LKGYARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYI 360

Query: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQKET+AM RLL+RIEITSP +KKK
Sbjct: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKK 420

Query: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480
           SLTWLLRGYIKGGHFRDAA TLVKM+NLGFLPEYLDRVAVLQGLRK IREPE+V TYLDL
Sbjct: 421 SLTWLLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           CKCLSDANLIGPSLVYLHLQK+KLW+IKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKHKLWIIKML 501

BLAST of CmaCh20G003360 vs. TrEMBL
Match: F6GUM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07010 PE=4 SV=1)

HSP 1 Score: 736.5 bits (1900), Expect = 2.2e-209
Identity = 362/500 (72.40%), Postives = 430/500 (86.00%), Query Frame = 1

Query: 11  TKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFSVSRAGKFRDL 70
           T+ GF+ S S  ++  RL    P+        +C   + I CNHQN  F V +  K R+ 
Sbjct: 15  TELGFTLSSSFSIQRPRL--IVPKFSRSFLGEYCSRATTI-CNHQNPRFVVPKRDKIREF 74

Query: 71  RLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLSAREFQLVLVY 130
           RLFKSVELDQF+TSDDEDEM +GFFEAIEELERMTR+PSDVLEEMNDRLSARE QLVLVY
Sbjct: 75  RLFKSVELDQFLTSDDEDEMSEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVLVY 134

Query: 131 FSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNVGDVVDLLVDM 190
           FSQEGRDSWCALEVFEWL+KENRVDKETMELMVSIMCSW+KKL+EG+H+VGDVVDLLVDM
Sbjct: 135 FSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEHDVGDVVDLLVDM 194

Query: 191 DCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGHKGGPSGYLAW 250
           DCVGLKP FSMIEKVISLYW+M EKEKA+ FVKEVL R++ + +D+ +GHKGGP+GYLAW
Sbjct: 195 DCVGLKPGFSMIEKVISLYWEMEEKEKAVLFVKEVLRREIAYSEDDGDGHKGGPTGYLAW 254

Query: 251 KMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRKLKSYARDGMV 310
           KMM +G+YRGAVK+V++LRESGLKPEVY +LIAMTAVVKELNEFAKALRKLK + + G++
Sbjct: 255 KMMAEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGFTKSGLI 314

Query: 311 AELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYICAGQGLEAER 370
           AELD +NVEL+++YQS+LLADGVRLS+WV+ EG S  HGVV+ERLLAMYICAG+GLEAER
Sbjct: 315 AELDAENVELIEKYQSDLLADGVRLSSWVIQEGRSPLHGVVYERLLAMYICAGRGLEAER 374

Query: 371 QLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKKSLTWLLRGYI 430
           QLWEMKLVGKEAD +LYDIVLAICAS+KE  A++RLL+ +E+TS   +KK+L+WLLRGYI
Sbjct: 375 QLWEMKLVGKEADRELYDIVLAICASKKEASAISRLLTGMEVTSSIRRKKTLSWLLRGYI 434

Query: 431 KGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDLCKCLSDANLI 490
           KG HF DA+ET++KM++LG  PEYLDR AVLQGLR RI++  NVETYL LCK LSDANLI
Sbjct: 435 KGSHFDDASETIIKMLDLGLCPEYLDRAAVLQGLRNRIQQTGNVETYLKLCKHLSDANLI 494

Query: 491 GPSLVYLHLQKYKLWVIKML 511
           GP LVYL+++KYKLW++K +
Sbjct: 495 GPCLVYLYIKKYKLWILKTI 511

BLAST of CmaCh20G003360 vs. TrEMBL
Match: B9HNB9_POPTR (Ubiquitin family protein OS=Populus trichocarpa GN=POPTR_0009s07900g PE=4 SV=1)

HSP 1 Score: 731.9 bits (1888), Expect = 5.4e-208
Identity = 358/470 (76.17%), Postives = 418/470 (88.94%), Query Frame = 1

Query: 44  CFIVSRITCNHQNS---TFSVSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEE 103
           C +VS I CN+Q      F V++  K R+ RLFKSVELDQ++TSDDE+EMG+GFFEAIEE
Sbjct: 31  CCMVSTIICNYQTPKRPNFVVAKTTKVREFRLFKSVELDQYVTSDDEEEMGEGFFEAIEE 90

Query: 104 LERMTRDPSDVLEEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETME 163
           LERMTR+PSD+LEEMNDRLSARE QLVLVYFSQEGRDSWCALEVFEWL+KENRVDKETME
Sbjct: 91  LERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETME 150

Query: 164 LMVSIMCSWIKKLVEGQHNVGDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAIS 223
           LMVSIMCSW+KKL+EG+ +VGDVVDLLVDMDCVGLKP FSMIEKVISLYWDMG+KE A+S
Sbjct: 151 LMVSIMCSWVKKLIEGEQDVGDVVDLLVDMDCVGLKPSFSMIEKVISLYWDMGKKEGAVS 210

Query: 224 FVKEVLGRKLDFMKDNWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCF 283
           FVKEVL R + +  D+ EG KGGP+GYL WKMMVDG+YR AVK+V++LRESGLKPE+Y +
Sbjct: 211 FVKEVLRRGIAYSGDDGEGQKGGPTGYLTWKMMVDGNYRNAVKLVIHLRESGLKPEIYAY 270

Query: 284 LIAMTAVVKELNEFAKALRKLKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVL 343
           LIAMTAVVKELNEF+KALRKLK Y+R GMV ELD +NVELV++YQS+LLADGV LS+WV+
Sbjct: 271 LIAMTAVVKELNEFSKALRKLKGYSRSGMVTELDAENVELVEKYQSDLLADGVCLSSWVI 330

Query: 344 DEGSSSSHGVVHERLLAMYICAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKET 403
            EGS + +GVVHERLLAMYICAG+GL+AERQLWEMKLVGKEAD DLYDIVLAICASQKE 
Sbjct: 331 QEGSPALYGVVHERLLAMYICAGRGLDAERQLWEMKLVGKEADGDLYDIVLAICASQKEA 390

Query: 404 RAMNRLLSRIEITSPRLKKKSLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAV 463
            A+ RLL+RIE+ S   KKKSL+WLLRGYIKGGH+ +AAETL+KM++LG  P+YLDRVAV
Sbjct: 391 SAVARLLTRIEVASSMRKKKSLSWLLRGYIKGGHYGEAAETLIKMLDLGLSPDYLDRVAV 450

Query: 464 LQGLRKRIREPENVETYLDLCKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           +QGLRKRI++  NVE+YL LCK LSD NLIGPSLVYL+++KYKLW++K+L
Sbjct: 451 MQGLRKRIQQWGNVESYLKLCKRLSDVNLIGPSLVYLYIKKYKLWIMKLL 500

BLAST of CmaCh20G003360 vs. TrEMBL
Match: M5VXS0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004609mg PE=4 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 1.3e-206
Identity = 362/483 (74.95%), Postives = 420/483 (86.96%), Query Frame = 1

Query: 29  GFSAPQLCSRSPVNFCFIVSRITCNHQNSTFSVSRAGKFRDLRLFKSVELDQFITSDDED 88
           GFSA Q C R       +  RI C HQ   F V+++ K RD RLFKSVELDQF+TSDDED
Sbjct: 27  GFSA-QSCGR-------VFPRI-CKHQKPNFIVAKSSKVRDFRLFKSVELDQFLTSDDED 86

Query: 89  EMGDGFFEAIEELERMTRDPSDVLEEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFEWL 148
           EMG+GFFEAIEELERMTR+PSDVLEEMNDRLSARE QLVLVYFSQEGRDSWCALEVFEWL
Sbjct: 87  EMGEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWL 146

Query: 149 QKENRVDKETMELMVSIMCSWIKKLVEGQHNVGDVVDLLVDMDCVGLKPHFSMIEKVISL 208
           +KENRVDKETM+LMVSIMCSW+KKL++ +H++GDVVDLLVDMDCVGLKP FSM+EKVISL
Sbjct: 147 RKENRVDKETMDLMVSIMCSWVKKLIQREHDIGDVVDLLVDMDCVGLKPSFSMMEKVISL 206

Query: 209 YWDMGEKEKAISFVKEVLGRKLDFMK-DNWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLN 268
           YW+MGEKEKA+ FVKEVL R + + + D+ +GHKGGP+GYLAWKMMV+G+YR +VK+V++
Sbjct: 207 YWEMGEKEKAVLFVKEVLKRGIVYSEEDDTDGHKGGPTGYLAWKMMVEGNYRDSVKLVIH 266

Query: 269 LRESGLKPEVYCFLIAMTAVVKELNEFAKALRKLKSYARDGMVAELDKDNVELVKRYQSE 328
           LRESGLKPEVY +LIAMTAVVKELNE AKALRKLK + R G++AE D +NV L+++YQS+
Sbjct: 267 LRESGLKPEVYSYLIAMTAVVKELNELAKALRKLKGFTRAGLIAEFDTENVGLIEKYQSD 326

Query: 329 LLADGVRLSNWVLDEGSSSSHGVVHERLLAMYICAGQGLEAERQLWEMKLVGKEADADLY 388
           LL+DGV+LSNWV+ EGSSS HGVVHERLLAMYIC+G GLEAERQLWEMKLVGKEADADLY
Sbjct: 327 LLSDGVQLSNWVIQEGSSSLHGVVHERLLAMYICSGHGLEAERQLWEMKLVGKEADADLY 386

Query: 389 DIVLAICASQKETRAMNRLLSRIEITSPRLKKKSLTWLLRGYIKGGHFRDAAETLVKMVN 448
           DIVLAICASQKE  A+ RLL+R E+TS   KKKSL+WLLRGYIKGGHF DAAET++KM++
Sbjct: 387 DIVLAICASQKEASAIGRLLTRTEVTSSLRKKKSLSWLLRGYIKGGHFDDAAETVIKMLD 446

Query: 449 LGFLPEYLDRVAVLQGLRKRIREPENVETYLDLCKCLSDANLIGPSLVYLHLQKYKLWVI 508
           LG  PE+LDR AVLQGLRK I+E   V+TYL LCK LSDA+LIGP LVYL ++KYKLW+ 
Sbjct: 447 LGLCPEFLDRAAVLQGLRKSIQESGGVDTYLKLCKRLSDASLIGPCLVYLFIRKYKLWIT 500

Query: 509 KML 511
           KML
Sbjct: 507 KML 500

BLAST of CmaCh20G003360 vs. TrEMBL
Match: W9R4F5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011688 PE=4 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 1.7e-206
Identity = 365/519 (70.33%), Postives = 433/519 (83.43%), Query Frame = 1

Query: 1   MICAPGFTPLTKFGF--SFSLSSGLKSKRLGFSAPQLC-------SRSPVNFCFIVSRIT 60
           M  A GFTPLT+ GF  S S SS   S  L  +   LC        R+   FC +   I 
Sbjct: 1   MASAQGFTPLTELGFPSSSSSSSSSSSNSLHRNRIFLCRMDENLWGRTSAKFCPV---IC 60

Query: 61  CNHQNSTFSVSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDV 120
           C  QN  F   +  K R+ RLF SVELDQF+TSDDE+EMG+GFFEAIEELERMTR+PSDV
Sbjct: 61  CKQQNPNFIAPKPSKLREFRLFTSVELDQFLTSDDEEEMGEGFFEAIEELERMTREPSDV 120

Query: 121 LEEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIK 180
           LEEMNDRLSARE QLVLVYFSQEGRDSWCALEVFEWL+KENRVDKETMELMV++MCSW+K
Sbjct: 121 LEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVTLMCSWVK 180

Query: 181 KLVEGQHNVGDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLD 240
           KL+EG+H+VGDVVDLLVDM CVGL+P FSM+E VI LYW+MGEK +A+SFVKEVL R + 
Sbjct: 181 KLIEGEHDVGDVVDLLVDMACVGLRPGFSMMENVILLYWEMGEKGRAVSFVKEVLRRGIA 240

Query: 241 FMKDNWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKEL 300
            ++D+ EG KGGP+GYLAWKMMV+G+Y  AVK+V+++RESGLKPEVY +LIAMTAVVKEL
Sbjct: 241 CLEDDGEGPKGGPTGYLAWKMMVEGNYMEAVKLVVDIRESGLKPEVYSYLIAMTAVVKEL 300

Query: 301 NEFAKALRKLKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVV 360
           NEFAKALRKLK + R G+ AELD+++VEL+++YQS+LL DGVRLSNWV++EG +S +GVV
Sbjct: 301 NEFAKALRKLKGFERAGLTAELDEESVELIEKYQSDLLDDGVRLSNWVIEEGITSLNGVV 360

Query: 361 HERLLAMYICAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIE 420
           HERLLAMYICAG+G+EAERQLW+MKLVGKEAD DLYDIVLAICASQKE RA+ RLL+R+ 
Sbjct: 361 HERLLAMYICAGRGIEAERQLWKMKLVGKEADGDLYDIVLAICASQKEGRAIARLLTRVN 420

Query: 421 ITSPRLKKKSLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREP 480
            +S   K+KSL+WLLRGYIKGGHF +AAET+VKM++LG  PEYLDR AVLQGLRKRI+ P
Sbjct: 421 FSSTLRKRKSLSWLLRGYIKGGHFDNAAETVVKMLDLGLCPEYLDRAAVLQGLRKRIKGP 480

Query: 481 ENVETYLDLCKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           + VETYL LCK LSD NLIGP L+YL+++KYKLW++KML
Sbjct: 481 DTVETYLKLCKHLSDYNLIGPCLIYLYIKKYKLWIMKML 516

BLAST of CmaCh20G003360 vs. TAIR10
Match: AT2G30100.1 (AT2G30100.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 600.9 bits (1548), Expect = 7.3e-172
Identity = 297/474 (62.66%), Postives = 376/474 (79.32%), Query Frame = 1

Query: 48  SRITCNHQNSTFSVSRAGKFRDLRLFKSVELDQFITSDDED----EMGDGFFEAIEELER 107
           SRI CN + +      AGKFR++ L +SVELDQFITS++E+    E+G+GFFEAIEELER
Sbjct: 34  SRIICNLKLNY----SAGKFREMGLSRSVELDQFITSEEEEGEAEEIGEGFFEAIEELER 93

Query: 108 MTRDPSDVLEEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMV 167
           MTR+PSD+LEEMN RLS+RE QL+LVYF+QEGRDSWC LEVFEWL+KENRVD+E MELMV
Sbjct: 94  MTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCTLEVFEWLKKENRVDEEIMELMV 153

Query: 168 SIMCSWIKKLVEGQHNVGDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVK 227
           SIMC W+KKL+E + N   V DLL++MDCVGLKP FSM++KVI+LY +MG+KE A+ FVK
Sbjct: 154 SIMCGWVKKLIEDECNAHQVFDLLIEMDCVGLKPGFSMMDKVIALYCEMGKKESAVLFVK 213

Query: 228 EVLGRKLDFMKD-----NWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVY 287
           EVL R+  F          EG KGGP GYLAWK MVDGDYR AV MV+ LR SGLKPE Y
Sbjct: 214 EVLRRRDGFGYSVVGGGGSEGRKGGPVGYLAWKFMVDGDYRKAVDMVMELRLSGLKPEAY 273

Query: 288 CFLIAMTAVVKELNEFAKALRKLKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNW 347
            +LIAMTA+VKELN   K LR+LK +AR G VAE+D  +  L+++YQSE L+ G++L+ W
Sbjct: 274 SYLIAMTAIVKELNSLGKTLRELKRFARAGFVAEIDDHDRVLIEKYQSETLSRGLQLATW 333

Query: 348 VLDEGSSSSH--GVVHERLLAMYICAGQGLEAERQLWEMKLVGKEADADLYDIVLAICAS 407
            ++EG  +    GVVHERLLAMYICAG+G EAE+QLW+MKL G+E +ADL+DIV+AICAS
Sbjct: 334 AVEEGQENDSIIGVVHERLLAMYICAGRGPEAEKQLWKMKLAGREPEADLHDIVMAICAS 393

Query: 408 QKETRAMNRLLSRIEITSPRLKKKSLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLD 467
           QKE  A++RLL+R+E    + KKK+L+WLLRGY+KGGHF +AAETLV M++ G  PEY+D
Sbjct: 394 QKEVNAVSRLLTRVEFMGSQRKKKTLSWLLRGYVKGGHFEEAAETLVSMIDSGLHPEYID 453

Query: 468 RVAVLQGLRKRIREPENVETYLDLCKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           RVAV+QG+ ++I+ P +VE Y+ LCK L DA L+GP LVY+++ KYKLW++KM+
Sbjct: 454 RVAVMQGMTRKIQRPRDVEAYMSLCKRLFDAGLVGPCLVYMYIDKYKLWIVKMM 503

BLAST of CmaCh20G003360 vs. NCBI nr
Match: gi|778713772|ref|XP_011657120.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucumis sativus])

HSP 1 Score: 902.5 bits (2331), Expect = 3.3e-259
Identity = 450/510 (88.24%), Postives = 480/510 (94.12%), Query Frame = 1

Query: 1   MICAPGFTPLTKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFS 60
           MICA GFTPLT+FGFSFSLSS L+S+R GFS P+L         ++VS I+CN+Q+STFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRL---------YMVSPISCNYQDSTFS 60

Query: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120
           VSRA KFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVLEEMNDRLS
Sbjct: 61  VSRAAKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180
           ARE QLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG+HNV
Sbjct: 121 AREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEKVISLYW+MGEKEKA+ FVKEVLGR L FMKD+WEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGH 240

Query: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRK 300
           KGGPSGYLAWKMMVDGDYRGAVKMVL+LRESGL+PEVY +LIAMTAVVKELNEFAKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYI 360
           LK YARDG VAELDK+NVELV +YQ+ELLADGV+LSNWVL+EGSSS  GVVHERLLAMYI
Sbjct: 301 LKGYARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYI 360

Query: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQKET+AM RLL+RIEITSP +KKK
Sbjct: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKK 420

Query: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480
           SLTWLLRGYIKGGHFRDAA TLVKM+NLGFLPEYLDRVAVLQGLRK IREPE+V TYLDL
Sbjct: 421 SLTWLLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           CKCLSDANLIGPSLVYLHLQK+KLW+IKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKHKLWIIKML 501

BLAST of CmaCh20G003360 vs. NCBI nr
Match: gi|659130631|ref|XP_008465268.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucumis melo])

HSP 1 Score: 898.7 bits (2321), Expect = 4.8e-258
Identity = 449/510 (88.04%), Postives = 479/510 (93.92%), Query Frame = 1

Query: 1   MICAPGFTPLTKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFS 60
           MICA GFTPLT+FGFSFSLSS L+++R GFS P+L         ++VS I+CN+Q+STFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLETQRYGFSTPRL---------YMVSPISCNYQDSTFS 60

Query: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120
           VSRA KFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVLEEMNDRLS
Sbjct: 61  VSRAAKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180
           ARE QLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWI KLVEG+HNV
Sbjct: 121 AREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWINKLVEGRHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEKVISLYW+MGEKEKAI FVKEVLGR L FMKD+WEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAIFFVKEVLGRNLAFMKDDWEGH 240

Query: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRK 300
           KGGPSGYLAWKMMVDGDYRGAVKMVL+LRESGL+PEVY +LIAMTAVVKELNEFAKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYI 360
           LKSYARDG VAELDK+NVELV +YQ+ELLADGVRLSNWVL+EGSSS HGVVHERLLAMYI
Sbjct: 301 LKSYARDGYVAELDKNNVELVAKYQTELLADGVRLSNWVLEEGSSSIHGVVHERLLAMYI 360

Query: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKK 420
           CAGQG+EAERQLWEMKL+GKEADADLYDIVLAICASQKE +AM RLL+RIEITSP +KKK
Sbjct: 361 CAGQGVEAERQLWEMKLLGKEADADLYDIVLAICASQKEIKAMKRLLTRIEITSPMIKKK 420

Query: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480
           SLTWLLRGYIKGGHFRDAA T+VKM+NLGFLPEYLDRVAVLQGLRK IREPE V TYLDL
Sbjct: 421 SLTWLLRGYIKGGHFRDAAGTVVKMINLGFLPEYLDRVAVLQGLRKGIREPEIVHTYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           CKCLSDANLIGPSLVYLHLQK+KLW+IKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKHKLWIIKML 501

BLAST of CmaCh20G003360 vs. NCBI nr
Match: gi|731391774|ref|XP_010650876.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 738.0 bits (1904), Expect = 1.1e-209
Identity = 363/500 (72.60%), Postives = 431/500 (86.20%), Query Frame = 1

Query: 11  TKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFSVSRAGKFRDL 70
           T+ GF+ S S  ++  RL    P+        +C   + I CNHQN  F V +  K R+ 
Sbjct: 15  TELGFTLSSSFSIQRPRL--IVPKFSRSFLGEYCSRATTI-CNHQNPRFVVPKRDKIREF 74

Query: 71  RLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLSAREFQLVLVY 130
           RLFKSVELDQF+TSDDEDEM +GFFEAIEELERMTR+PSDVLEEMNDRLSARE QLVLVY
Sbjct: 75  RLFKSVELDQFLTSDDEDEMSEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVLVY 134

Query: 131 FSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNVGDVVDLLVDM 190
           FSQEGRDSWCALEVFEWL+KENRVDKETMELMVSIMCSW+KKL+EG+H+VGDVVDLLVDM
Sbjct: 135 FSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEHDVGDVVDLLVDM 194

Query: 191 DCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGHKGGPSGYLAW 250
           DCVGLKP FSMIEKVISLYW+M EKEKA+ FVKEVL R++ + +D+ +GHKGGP+GYLAW
Sbjct: 195 DCVGLKPGFSMIEKVISLYWEMEEKEKAVLFVKEVLRREIAYSEDDGDGHKGGPTGYLAW 254

Query: 251 KMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRKLKSYARDGMV 310
           KMMV+G+YRGAVK+V++LRESGLKPEVY +LIAMTAVVKELNEFAKALRKLK + + G++
Sbjct: 255 KMMVEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGFTKSGLI 314

Query: 311 AELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYICAGQGLEAER 370
           AELD +NVEL+++YQS+LLADGVRLS+WV+ EG S  HGVV+ERLLAMYICAG+GLEAER
Sbjct: 315 AELDAENVELIEKYQSDLLADGVRLSSWVIQEGRSPLHGVVYERLLAMYICAGRGLEAER 374

Query: 371 QLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKKSLTWLLRGYI 430
           QLWEMKLVGKEAD +LYDIVLAICAS+KE  A++RLL+ +E+TS   +KK+L+WLLRGYI
Sbjct: 375 QLWEMKLVGKEADRELYDIVLAICASKKEASAISRLLTGMEVTSSIRRKKTLSWLLRGYI 434

Query: 431 KGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDLCKCLSDANLI 490
           KG HF DA+ET++KM++LG  PEYLDR AVLQGLR RI++  NVETYL LCK LSDANLI
Sbjct: 435 KGSHFDDASETIIKMLDLGLCPEYLDRAAVLQGLRNRIQQTGNVETYLKLCKHLSDANLI 494

Query: 491 GPSLVYLHLQKYKLWVIKML 511
           GP LVYL+++KYKLW++K +
Sbjct: 495 GPCLVYLYIKKYKLWILKTI 511

BLAST of CmaCh20G003360 vs. NCBI nr
Match: gi|225434512|ref|XP_002278434.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic isoform X1 [Vitis vinifera])

HSP 1 Score: 736.5 bits (1900), Expect = 3.2e-209
Identity = 362/500 (72.40%), Postives = 430/500 (86.00%), Query Frame = 1

Query: 11  TKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFSVSRAGKFRDL 70
           T+ GF+ S S  ++  RL    P+        +C   + I CNHQN  F V +  K R+ 
Sbjct: 15  TELGFTLSSSFSIQRPRL--IVPKFSRSFLGEYCSRATTI-CNHQNPRFVVPKRDKIREF 74

Query: 71  RLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLSAREFQLVLVY 130
           RLFKSVELDQF+TSDDEDEM +GFFEAIEELERMTR+PSDVLEEMNDRLSARE QLVLVY
Sbjct: 75  RLFKSVELDQFLTSDDEDEMSEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVLVY 134

Query: 131 FSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNVGDVVDLLVDM 190
           FSQEGRDSWCALEVFEWL+KENRVDKETMELMVSIMCSW+KKL+EG+H+VGDVVDLLVDM
Sbjct: 135 FSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEHDVGDVVDLLVDM 194

Query: 191 DCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGHKGGPSGYLAW 250
           DCVGLKP FSMIEKVISLYW+M EKEKA+ FVKEVL R++ + +D+ +GHKGGP+GYLAW
Sbjct: 195 DCVGLKPGFSMIEKVISLYWEMEEKEKAVLFVKEVLRREIAYSEDDGDGHKGGPTGYLAW 254

Query: 251 KMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRKLKSYARDGMV 310
           KMM +G+YRGAVK+V++LRESGLKPEVY +LIAMTAVVKELNEFAKALRKLK + + G++
Sbjct: 255 KMMAEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGFTKSGLI 314

Query: 311 AELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYICAGQGLEAER 370
           AELD +NVEL+++YQS+LLADGVRLS+WV+ EG S  HGVV+ERLLAMYICAG+GLEAER
Sbjct: 315 AELDAENVELIEKYQSDLLADGVRLSSWVIQEGRSPLHGVVYERLLAMYICAGRGLEAER 374

Query: 371 QLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKKSLTWLLRGYI 430
           QLWEMKLVGKEAD +LYDIVLAICAS+KE  A++RLL+ +E+TS   +KK+L+WLLRGYI
Sbjct: 375 QLWEMKLVGKEADRELYDIVLAICASKKEASAISRLLTGMEVTSSIRRKKTLSWLLRGYI 434

Query: 431 KGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDLCKCLSDANLI 490
           KG HF DA+ET++KM++LG  PEYLDR AVLQGLR RI++  NVETYL LCK LSDANLI
Sbjct: 435 KGSHFDDASETIIKMLDLGLCPEYLDRAAVLQGLRNRIQQTGNVETYLKLCKHLSDANLI 494

Query: 491 GPSLVYLHLQKYKLWVIKML 511
           GP LVYL+++KYKLW++K +
Sbjct: 495 GPCLVYLYIKKYKLWILKTI 511

BLAST of CmaCh20G003360 vs. NCBI nr
Match: gi|1009116101|ref|XP_015874593.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 732.6 bits (1890), Expect = 4.6e-208
Identity = 369/511 (72.21%), Postives = 427/511 (83.56%), Query Frame = 1

Query: 1   MICAPGFTPLTKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRIT-CNHQNSTF 60
           M  A GFT L + G S S SS     R    AP +C      F   V  I  C HQN  F
Sbjct: 1   MDSAHGFTSLIQLGLS-SPSSSFSLHRHPIFAPPICQNLAGRFYPRVCPIIYCRHQNPYF 60

Query: 61  SVSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRL 120
            V++  KFR+ RLFKSVELDQF+TSDDE+EMG+GFFEAIEELERMTR+PSDVLEEMN+RL
Sbjct: 61  IVTKQSKFREFRLFKSVELDQFLTSDDEEEMGEGFFEAIEELERMTREPSDVLEEMNERL 120

Query: 121 SAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHN 180
           SARE QLVLVYFSQEGRDSWCALEVFEWL+KENRVDKETMELMVSIMCSW+KKL+E + +
Sbjct: 121 SARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEEERD 180

Query: 181 VGDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEG 240
           VGDVVDLLVDMDCVGLKP FSM+EKVISLYW+MGEKE+++ FVKEVL R +   +D+ +G
Sbjct: 181 VGDVVDLLVDMDCVGLKPSFSMMEKVISLYWEMGEKERSVLFVKEVLRRGIACSEDDGDG 240

Query: 241 HKGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALR 300
           HKGGP+GYLAWKMM +G+Y GAVK+V+N+RESGLKPEVY +LIAMTAVVKELNEFAKALR
Sbjct: 241 HKGGPTGYLAWKMMAEGNYMGAVKLVVNIRESGLKPEVYSYLIAMTAVVKELNEFAKALR 300

Query: 301 KLKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMY 360
           KLK +A+DG+VAE+D +N  L+K+YQS+LLA GVRLSNW+  EGSSS  GVVHERLLAMY
Sbjct: 301 KLKGFAKDGLVAEVDTENAGLIKKYQSDLLAVGVRLSNWITQEGSSSLSGVVHERLLAMY 360

Query: 361 ICAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKK 420
           +CAG+GLEAERQLWEMKLVGKEAD DLYDIVLAICASQKE  A+ RLL+R+E TS   KK
Sbjct: 361 VCAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQKEASAIARLLTRLEATSSLRKK 420

Query: 421 KSLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLD 480
           KSL+WLLRGYIKGGHF +AAET+ KM++LG  PEYLDR AVLQGLR+RI     +ETYL 
Sbjct: 421 KSLSWLLRGYIKGGHFDNAAETVFKMLDLGLPPEYLDRAAVLQGLRRRIHRSGGLETYLK 480

Query: 481 LCKCLSDANLIGPSLVYLHLQKYKLWVIKML 511
           LCK LSD NLIGP L+YL+++KYKLW+IKM+
Sbjct: 481 LCKRLSDNNLIGPCLLYLYIKKYKLWIIKMI 510

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP176_ARATH1.3e-17062.66Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0KC35_CUCSA2.3e-25988.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182120 PE=4 SV=1[more]
F6GUM4_VITVI2.2e-20972.40Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07010 PE=4 SV=... [more]
B9HNB9_POPTR5.4e-20876.17Ubiquitin family protein OS=Populus trichocarpa GN=POPTR_0009s07900g PE=4 SV=1[more]
M5VXS0_PRUPE1.3e-20674.95Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004609mg PE=4 SV=1[more]
W9R4F5_9ROSA1.7e-20670.33Uncharacterized protein OS=Morus notabilis GN=L484_011688 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G30100.17.3e-17262.66 pentatricopeptide (PPR) repeat-containing protein[more]
Match NameE-valueIdentityDescription
gi|778713772|ref|XP_011657120.1|3.3e-25988.24PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ... [more]
gi|659130631|ref|XP_008465268.1|4.8e-25888.04PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ... [more]
gi|731391774|ref|XP_010650876.1|1.1e-20972.60PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ... [more]
gi|225434512|ref|XP_002278434.1|3.2e-20972.40PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ... [more]
gi|1009116101|ref|XP_015874593.1|4.6e-20872.21PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003674 molecular_function
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G003360.1CmaCh20G003360.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 418..452
score: 8
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 41..297
score: 9.2E-97coord: 347..453
score: 9.2
NoneNo IPR availablePANTHERPTHR24015:SF683SUBFAMILY NOT NAMEDcoord: 41..297
score: 9.2E-97coord: 347..453
score: 9.2

The following gene(s) are paralogous to this gene:

None