CSPI06G13590 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G13590
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pentatricopeptide repeat-containing protein, chloroplastic
Location	Chr6 : 12079923 .. 12083269 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTGTCTTCCAGTGGCGCCAAAAACGCTGCCATTGCGACCACTCACTCCGACCTCCCACCCTTCACCCTTCACCCCTCTCTCTATTCTCCCCCACAACCTTAGGGTTCCTTTCTTTTCTTCTCCGATCATCAATTCACTTTAATTCAATCCAATTCACCGCTTCTTCAACCCCCTTCTCTCTCTCTCTATTCTTCTCTCTTCTCTCTTCCGCTTTTCGTTTCCTTCATTTTCTGTTTCTTTTGTTACTGTTTTTTAACTGCTTCAAATTTCTCTCCTAATTCATGCGCCGGGAAACCCTTTTCTTCATTTCTTCCTTTCTTTACTTTCAAGTTTAGTGCCTTTGGATTCAAACTTCGAAATGATTTGTGCCCAGGGCTTTACTCCCTTAACCCAATTTGGGTTTTCATTTTCTTTATCTTCTCCATTGGAATCTCAGAGATGTGGGTTTTCTACTCCCCGATTGTATATGGTTTCTCCTATTTCTTGCAATTACCAGGATTCTACTTTCTCTCTTTCCAGAGCTGCTAAGTTTCGGGATTTAAGGTTGTTCAAATCGGTTGAGTTGGACCAGTTCATCACCAGTGATGATGAAGATGAAATGGGTGATGGGTTTTTTGAGGCCATTGAGGAATTGGAACGGATGACGAGGGAACCATCGGATGTTCTTGAAGAAATGAACGATCGCCTTTCCGCTAGGGAAATTCAGCTTGTGTTGGTCTACTTCTCTCAAGAAGGTAGAGATTCATGGTGTGCTCTTGAGGTTTTTGAGTGGCTTCAAAAGGAAAATCGGGTTGATAAGGAGACCATGGAGCTTATGGTGTCTATAATGTGTAGTTGGATCAAGAAGTTGGTGGAGGGACGACATAATGTTGGAGATGTTGTTGACCTTCTTGTGGATATGGATTGTGTTGGTTTGAAACCTCATTTTAGCATGATAGAAAAGGTTATCTCTTTGTACTGGGAAATGGGTGAGAAGGAAAAAGCGGTTTTCTTTGTGAAAGAGGTTTTGGGGCGCAATCTTGCTTTTATGAAGGATGATTGGGAGGGGCATAAAGGAGGACCGAGCGGTTATCTTGCATGGAAGATGATGGTAAGCCTTCAGCTAATCAAGATTTTCGTATCTTTAGCCATTAACTTGCTTCAGAGTCAACAATGGTATTCTTTTGCTGTGTCTATCTATTATTGCATTGAAAATTCATATCATGAAATCTAAATATCTTCAATCAATGTTTACTAGCTTTGAATGTCATATTTTGAATCTTGAAATTCCTGATTTTAGAGATTCCTTACGTTTACATTCTTTATTTTACTCCTGTAGTTTAATCATTTAGGTTAGTATCTTGATCTTATTAGATTTTTTTTTGTTATTTGAGCATCAGATTTTTGTTGTTATTTGAGCATCAGATTTTTGTTGTGGTGACTTTGGTCAGTGTTGAAAAGAATATTTTCTGGGGTTGTGTTTGTATAATCATAATTGGAGGGGTTCAGGAAGAACTATGTAGGTTTTCTTTTTTATCAGAGAGCTAGGTGGGCGTTCAGTATGTACTATGATTTGGTATTAGTACTTTTGATACATATGGTTAAGCATGTTTGAGTCTATTGTTATGTGTGCCTCAAAAAAGAAAAAGAGAATCAGTGTTGGTGATACTGAAGTTTATTCCTGCAGACGTAGGATTTGGGAAACCCATGAGTATCTTAGGGACCTTTTCACTTGAACTTTGTTGTCGTTAGTTTCATTTATTGAGAACTTTTGGGCTTATCTTTGTTCATTGTCAATTTCTTTGGAGCTTCATCTATCATCAGTGAAAGTATCCATCTTTATGGTCTCTTCTAGAAGCCATTTTTAGATTGTTGAATTGCCTTTCTATGTTAGTATATGCGGTGTATTAAACTTCCATATCATAGTGCTACTTCTGGTATTCTCTTGCTTCTATTAGTTGCACTCCTGCATACATGATTTATTTTGAACAACATCGAGTAACTGTATGTGGCGCTGGAATCTAGTATTATAGCACACTACTGATACTTTTGTTCCCTTCACCAGTTAATGGTAGTTGATTAGTTGCACAAGGATTTTAAAAAGTTTTATCAAATTGTTATGTTTGTCCAGCACGACCCCAAGTGAAAATTCAATTGCTAATGATCTCGAAAATAAATTCTCTTAGGTTGATGGTGACTACAGAGGTGCAGTGAAAATGGTGCTGCATCTTAGAGAATCTGGGTTAAGGCCAGAGGTTTACTCCTATCTTATTGCCATGACTGCTGTGGTTAAAGAGCTGAATGAATTTGCAAAAGCTCTTCGGAAACTCAAAGGCTATGCAAGAGACGGGTTTGTGGCTGAACTTGATAAAAACAATGTTGAACTTGTTGCAAAGTATCAGACAGAGCTTCTAGCTGATGGAGTGCAGTTATCCAACTGGGTACTTGAAGAGGGAAGCTCTTCAATTCGTGGGGTGGTTCACGAGAGACTCCTTGCAATGTACATTTGTGCTGGGCAAGGAGTCGAGGCAGAGAGACAGCTTTGGGAAATGAAGCTTGTTGGCAAGGAGGCCGATGCTGATCTCTACGATATTGTTCTAGCCATTTGTGCTTCACAGAAGGAGACAAAAGCAATGAAACGGTTGCTTACCAGGATCGAGATTACGAGTCCCATGATTAAGAAAAAGAGTTTGACATGGCTACTTAGGGGTTACATCAAAGGAGGGCATTTCCGTGATGCTGCAGGAACATTAGTAAAAATGATCAATTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCTGTACTGCAAGGATTAAGAAAAGAAATTCGTGAACCAGAAAGTGTTCATACGTACCTCGATCTCTGCAAGTGTCTTTCTGATGCCAATCTAATTGGACCTAGTCTTGTATATTTGCACTTACAGAAACACAAGCTCTGGATCATTAAAATGCTTTGAAGAAACTCCTCAACACCTACCTCTTTGCACAGGCAGCTAATAAAAGTGGATCAAAAACCATATTCATATCATACAGCACCAGCTCTTTTTTAGGTGCTTTTACATGTTGATCTTGTATAGTTTGAAGCTCTGTAAGCTGACCTTGAAGAGGAATACTTGTGTATATATATAAATATACATGTATGAGCAACGACTGTGCACAAAGAACCAATGTTTCAATGTATAGATTGTATAAAGAAATTACATATTCTGATATTTTTAGTGTACATGCCTTGGTTTCTTCCGTGTTTTCATGTGTGAAGAATCTGGTTTTCATTGTAAAAGGAAAAAGACAACCAAATGGAGAAGAAGGAGAAGGAGAAGTTTGTGAACTGTCGTGGCCATATTTTGCTTCTTCCTGCCCAG

mRNA sequence

ATGATTTGTGCCCAGGGCTTTACTCCCTTAACCCAATTTGGGTTTTCATTTTCTTTATCTTCTCCATTGGAATCTCAGAGATGTGGGTTTTCTACTCCCCGATTGTATATGGTTTCTCCTATTTCTTGCAATTACCAGGATTCTACTTTCTCTCTTTCCAGAGCTGCTAAGTTTCGGGATTTAAGGTTGTTCAAATCGGTTGAGTTGGACCAGTTCATCACCAGTGATGATGAAGATGAAATGGGTGATGGGTTTTTTGAGGCCATTGAGGAATTGGAACGGATGACGAGGGAACCATCGGATGTTCTTGAAGAAATGAACGATCGCCTTTCCGCTAGGGAAATTCAGCTTGTGTTGGTCTACTTCTCTCAAGAAGGTAGAGATTCATGGTGTGCTCTTGAGGTTTTTGAGTGGCTTCAAAAGGAAAATCGGGTTGATAAGGAGACCATGGAGCTTATGGTGTCTATAATGTGTAGTTGGATCAAGAAGTTGGTGGAGGGACGACATAATGTTGGAGATGTTGTTGACCTTCTTGTGGATATGGATTGTGTTGGTTTGAAACCTCATTTTAGCATGATAGAAAAGGTTATCTCTTTGTACTGGGAAATGGGTGAGAAGGAAAAAGCGGTTTTCTTTGTGAAAGAGGTTTTGGGGCGCAATCTTGCTTTTATGAAGGATGATTGGGAGGGGCATAAAGGAGGACCGAGCGGTTATCTTGCATGGAAGATGATGGTTGATGGTGACTACAGAGGTGCAGTGAAAATGGTGCTGCATCTTAGAGAATCTGGGTTAAGGCCAGAGGTTTACTCCTATCTTATTGCCATGACTGCTGTGGTTAAAGAGCTGAATGAATTTGCAAAAGCTCTTCGGAAACTCAAAGGCTATGCAAGAGACGGGTTTGTGGCTGAACTTGATAAAAACAATGTTGAACTTGTTGCAAAGTATCAGACAGAGCTTCTAGCTGATGGAGTGCAGTTATCCAACTGGGTACTTGAAGAGGGAAGCTCTTCAATTCGTGGGGTGGTTCACGAGAGACTCCTTGCAATGTACATTTGTGCTGGGCAAGGAGTCGAGGCAGAGAGACAGCTTTGGGAAATGAAGCTTGTTGGCAAGGAGGCCGATGCTGATCTCTACGATATTGTTCTAGCCATTTGTGCTTCACAGAAGGAGACAAAAGCAATGAAACGGTTGCTTACCAGGATCGAGATTACGAGTCCCATGATTAAGAAAAAGAGTTTGACATGGCTACTTAGGGGTTACATCAAAGGAGGGCATTTCCGTGATGCTGCAGGAACATTAGTAAAAATGATCAATTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCTGTACTGCAAGGATTAAGAAAAGAAATTCGTGAACCAGAAAGTGTTCATACGTACCTCGATCTCTGCAAGTGTCTTTCTGATGCCAATCTAATTGGACCTAGTCTTGTATATTTGCACTTACAGAAACACAAGCTCTGGATCATTAAAATGCTTTGA

Coding sequence (CDS)

ATGATTTGTGCCCAGGGCTTTACTCCCTTAACCCAATTTGGGTTTTCATTTTCTTTATCTTCTCCATTGGAATCTCAGAGATGTGGGTTTTCTACTCCCCGATTGTATATGGTTTCTCCTATTTCTTGCAATTACCAGGATTCTACTTTCTCTCTTTCCAGAGCTGCTAAGTTTCGGGATTTAAGGTTGTTCAAATCGGTTGAGTTGGACCAGTTCATCACCAGTGATGATGAAGATGAAATGGGTGATGGGTTTTTTGAGGCCATTGAGGAATTGGAACGGATGACGAGGGAACCATCGGATGTTCTTGAAGAAATGAACGATCGCCTTTCCGCTAGGGAAATTCAGCTTGTGTTGGTCTACTTCTCTCAAGAAGGTAGAGATTCATGGTGTGCTCTTGAGGTTTTTGAGTGGCTTCAAAAGGAAAATCGGGTTGATAAGGAGACCATGGAGCTTATGGTGTCTATAATGTGTAGTTGGATCAAGAAGTTGGTGGAGGGACGACATAATGTTGGAGATGTTGTTGACCTTCTTGTGGATATGGATTGTGTTGGTTTGAAACCTCATTTTAGCATGATAGAAAAGGTTATCTCTTTGTACTGGGAAATGGGTGAGAAGGAAAAAGCGGTTTTCTTTGTGAAAGAGGTTTTGGGGCGCAATCTTGCTTTTATGAAGGATGATTGGGAGGGGCATAAAGGAGGACCGAGCGGTTATCTTGCATGGAAGATGATGGTTGATGGTGACTACAGAGGTGCAGTGAAAATGGTGCTGCATCTTAGAGAATCTGGGTTAAGGCCAGAGGTTTACTCCTATCTTATTGCCATGACTGCTGTGGTTAAAGAGCTGAATGAATTTGCAAAAGCTCTTCGGAAACTCAAAGGCTATGCAAGAGACGGGTTTGTGGCTGAACTTGATAAAAACAATGTTGAACTTGTTGCAAAGTATCAGACAGAGCTTCTAGCTGATGGAGTGCAGTTATCCAACTGGGTACTTGAAGAGGGAAGCTCTTCAATTCGTGGGGTGGTTCACGAGAGACTCCTTGCAATGTACATTTGTGCTGGGCAAGGAGTCGAGGCAGAGAGACAGCTTTGGGAAATGAAGCTTGTTGGCAAGGAGGCCGATGCTGATCTCTACGATATTGTTCTAGCCATTTGTGCTTCACAGAAGGAGACAAAAGCAATGAAACGGTTGCTTACCAGGATCGAGATTACGAGTCCCATGATTAAGAAAAAGAGTTTGACATGGCTACTTAGGGGTTACATCAAAGGAGGGCATTTCCGTGATGCTGCAGGAACATTAGTAAAAATGATCAATTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCTGTACTGCAAGGATTAAGAAAAGAAATTCGTGAACCAGAAAGTGTTCATACGTACCTCGATCTCTGCAAGTGTCTTTCTGATGCCAATCTAATTGGACCTAGTCTTGTATATTTGCACTTACAGAAACACAAGCTCTGGATCATTAAAATGCTTTGA

Homology

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BLAST of CSPI06G13590 vs. Swiss-Prot
Match: PP176_ARATH (Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana GN=At2g30100 PE=2 SV=2)

HSP 1 Score: 602.8 bits (1553), Expect = 3.4e-171
Identity = 300/458 (65.50%), Postives = 366/458 (79.91%), Query Frame = 1


Query: 55  AAKFRDLRLFKSVELDQFITSDDED----EMGDGFFEAIEELERMTREPSDVLEEMNDRL 114
           A KFR++ L +SVELDQFITS++E+    E+G+GFFEAIEELERMTREPSD+LEEMN RL
Sbjct: 46  AGKFREMGLSRSVELDQFITSEEEEGEAEEIGEGFFEAIEELERMTREPSDILEEMNHRL 105

Query: 115 SAREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHN 174
           S+RE+QL+LVYF+QEGRDSWC LEVFEWL+KENRVD+E MELMVSIMC W+KKL+E   N
Sbjct: 106 SSRELQLMLVYFAQEGRDSWCTLEVFEWLKKENRVDEEIMELMVSIMCGWVKKLIEDECN 165

Query: 175 VGDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKD---- 234
              V DLL++MDCVGLKP FSM++KVI+LY EMG+KE AV FVKEVL R   F       
Sbjct: 166 AHQVFDLLIEMDCVGLKPGFSMMDKVIALYCEMGKKESAVLFVKEVLRRRDGFGYSVVGG 225

Query: 235 -DWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEF 294
              EG KGGP GYLAWK MVDGDYR AV MV+ LR SGL+PE YSYLIAMTA+VKELN  
Sbjct: 226 GGSEGRKGGPVGYLAWKFMVDGDYRKAVDMVMELRLSGLKPEAYSYLIAMTAIVKELNSL 285

Query: 295 AKALRKLKGYARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEG--SSSIRGVVH 354
            K LR+LK +AR GFVAE+D ++  L+ KYQ+E L+ G+QL+ W +EEG  + SI GVVH
Sbjct: 286 GKTLRELKRFARAGFVAEIDDHDRVLIEKYQSETLSRGLQLATWAVEEGQENDSIIGVVH 345

Query: 355 ERLLAMYICAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEI 414
           ERLLAMYICAG+G EAE+QLW+MKL G+E +ADL+DIV+AICASQKE  A+ RLLTR+E 
Sbjct: 346 ERLLAMYICAGRGPEAEKQLWKMKLAGREPEADLHDIVMAICASQKEVNAVSRLLTRVEF 405

Query: 415 TSPMIKKKSLTWLLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPE 474
                KKK+L+WLLRGY+KGGHF +AA TLV MI+ G  PEY+DRVAV+QG+ ++I+ P 
Sbjct: 406 MGSQRKKKTLSWLLRGYVKGGHFEEAAETLVSMIDSGLHPEYIDRVAVMQGMTRKIQRPR 465

Query: 475 SVHTYLDLCKCLSDANLIGPSLVYLHLQKHKLWIIKML 502
            V  Y+ LCK L DA L+GP LVY+++ K+KLWI+KM+
Sbjct: 466 DVEAYMSLCKRLFDAGLVGPCLVYMYIDKYKLWIVKMM 503

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BLAST of CSPI06G13590 vs. Swiss-Prot
Match: PPR31_ARATH (Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-06
Identity = 49/225 (21.78%), Postives = 98/225 (43.56%), Query Frame = 1


Query: 243 MMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGFVA 302
           ++ +G     +K+   ++  GL+P+V +Y   +   +K  N + KA              
Sbjct: 176 LVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKA-------------- 235

Query: 303 ELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAERQ 362
                 +EL+     EL  +G+Q+ +            V++  +LA+    G+  EAE  
Sbjct: 236 ------IELIG----ELPHNGIQMDS------------VMYGTVLAICASNGRSEEAENF 295

Query: 363 LWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGYIK 422
           + +MK+ G   +   Y  +L   + + + K    L+T ++    +  K  +T LL+ YIK
Sbjct: 296 IQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIK 355

Query: 423 GGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRK--EIREPESV 466
           GG F  +   L ++ + G+    +    ++ GL K  ++ E  S+
Sbjct: 356 GGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSI 364

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BLAST of CSPI06G13590 vs. TrEMBL
Match: A0A0A0KC35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182120 PE=4 SV=1)

HSP 1 Score: 1002.3 bits (2590), Expect = 2.1e-289
Identity = 500/501 (99.80%), Postives = 501/501 (100.00%), Query Frame = 1


Query: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSLSRAAKFRD 60
           MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFS+SRAAKFRD
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSVSRAAKFRD 60

Query: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120
           LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV
Sbjct: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120

Query: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180
           YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD
Sbjct: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180

Query: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA 240
           MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA
Sbjct: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA 240

Query: 241 WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGF 300
           WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGF
Sbjct: 241 WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGF 300

Query: 301 VAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAE 360
           VAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAE
Sbjct: 301 VAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAE 360

Query: 361 RQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGY 420
           RQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGY
Sbjct: 361 RQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGY 420

Query: 421 IKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANL 480
           IKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANL
Sbjct: 421 IKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANL 480

Query: 481 IGPSLVYLHLQKHKLWIIKML 502
           IGPSLVYLHLQKHKLWIIKML
Sbjct: 481 IGPSLVYLHLQKHKLWIIKML 501

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BLAST of CSPI06G13590 vs. TrEMBL
Match: M5VXS0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004609mg PE=4 SV=1)

HSP 1 Score: 738.8 bits (1906), Expect = 4.4e-210
Identity = 369/502 (73.51%), Postives = 425/502 (84.66%), Query Frame = 1


Query: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSLSRAAKFRD 60
           M  AQG   LT   F+      +  +  GFS      V P  C +Q   F +++++K RD
Sbjct: 1   MASAQGLASLTHSLFAVKRQRFMGLR--GFSAQSCGRVFPRICKHQKPNFIVAKSSKVRD 60

Query: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120
            RLFKSVELDQF+TSDDEDEMG+GFFEAIEELERMTREPSDVLEEMNDRLSARE+QLVLV
Sbjct: 61  FRLFKSVELDQFLTSDDEDEMGEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVLV 120

Query: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180
           YFSQEGRDSWCALEVFEWL+KENRVDKETM+LMVSIMCSW+KKL++  H++GDVVDLLVD
Sbjct: 121 YFSQEGRDSWCALEVFEWLRKENRVDKETMDLMVSIMCSWVKKLIQREHDIGDVVDLLVD 180

Query: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMK-DDWEGHKGGPSGYL 240
           MDCVGLKP FSM+EKVISLYWEMGEKEKAV FVKEVL R + + + DD +GHKGGP+GYL
Sbjct: 181 MDCVGLKPSFSMMEKVISLYWEMGEKEKAVLFVKEVLKRGIVYSEEDDTDGHKGGPTGYL 240

Query: 241 AWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDG 300
           AWKMMV+G+YR +VK+V+HLRESGL+PEVYSYLIAMTAVVKELNE AKALRKLKG+ R G
Sbjct: 241 AWKMMVEGNYRDSVKLVIHLRESGLKPEVYSYLIAMTAVVKELNELAKALRKLKGFTRAG 300

Query: 301 FVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEA 360
            +AE D  NV L+ KYQ++LL+DGVQLSNWV++EGSSS+ GVVHERLLAMYIC+G G+EA
Sbjct: 301 LIAEFDTENVGLIEKYQSDLLSDGVQLSNWVIQEGSSSLHGVVHERLLAMYICSGHGLEA 360

Query: 361 ERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRG 420
           ERQLWEMKLVGKEADADLYDIVLAICASQKE  A+ RLLTR E+TS + KKKSL+WLLRG
Sbjct: 361 ERQLWEMKLVGKEADADLYDIVLAICASQKEASAIGRLLTRTEVTSSLRKKKSLSWLLRG 420

Query: 421 YIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDAN 480
           YIKGGHF DAA T++KM++LG  PE+LDR AVLQGLRK I+E   V TYL LCK LSDA+
Sbjct: 421 YIKGGHFDDAAETVIKMLDLGLCPEFLDRAAVLQGLRKSIQESGGVDTYLKLCKRLSDAS 480

Query: 481 LIGPSLVYLHLQKHKLWIIKML 502
           LIGP LVYL ++K+KLWI KML
Sbjct: 481 LIGPCLVYLFIRKYKLWITKML 500

[Close]

BLAST of CSPI06G13590 vs. TrEMBL
Match: B9HNB9_POPTR (Ubiquitin family protein OS=Populus trichocarpa GN=POPTR_0009s07900g PE=4 SV=1)

HSP 1 Score: 731.1 bits (1886), Expect = 9.1e-208
Identity = 358/468 (76.50%), Postives = 415/468 (88.68%), Query Frame = 1


Query: 37  MVSPISCNYQDS---TFSLSRAAKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELE 96
           MVS I CNYQ      F +++  K R+ RLFKSVELDQ++TSDDE+EMG+GFFEAIEELE
Sbjct: 33  MVSTIICNYQTPKRPNFVVAKTTKVREFRLFKSVELDQYVTSDDEEEMGEGFFEAIEELE 92

Query: 97  RMTREPSDVLEEMNDRLSAREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELM 156
           RMTREPSD+LEEMNDRLSARE+QLVLVYFSQEGRDSWCALEVFEWL+KENRVDKETMELM
Sbjct: 93  RMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETMELM 152

Query: 157 VSIMCSWIKKLVEGRHNVGDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFV 216
           VSIMCSW+KKL+EG  +VGDVVDLLVDMDCVGLKP FSMIEKVISLYW+MG+KE AV FV
Sbjct: 153 VSIMCSWVKKLIEGEQDVGDVVDLLVDMDCVGLKPSFSMIEKVISLYWDMGKKEGAVSFV 212

Query: 217 KEVLGRNLAFMKDDWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLI 276
           KEVL R +A+  DD EG KGGP+GYL WKMMVDG+YR AVK+V+HLRESGL+PE+Y+YLI
Sbjct: 213 KEVLRRGIAYSGDDGEGQKGGPTGYLTWKMMVDGNYRNAVKLVIHLRESGLKPEIYAYLI 272

Query: 277 AMTAVVKELNEFAKALRKLKGYARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEE 336
           AMTAVVKELNEF+KALRKLKGY+R G V ELD  NVELV KYQ++LLADGV LS+WV++E
Sbjct: 273 AMTAVVKELNEFSKALRKLKGYSRSGMVTELDAENVELVEKYQSDLLADGVCLSSWVIQE 332

Query: 337 GSSSIRGVVHERLLAMYICAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKA 396
           GS ++ GVVHERLLAMYICAG+G++AERQLWEMKLVGKEAD DLYDIVLAICASQKE  A
Sbjct: 333 GSPALYGVVHERLLAMYICAGRGLDAERQLWEMKLVGKEADGDLYDIVLAICASQKEASA 392

Query: 397 MKRLLTRIEITSPMIKKKSLTWLLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQ 456
           + RLLTRIE+ S M KKKSL+WLLRGYIKGGH+ +AA TL+KM++LG  P+YLDRVAV+Q
Sbjct: 393 VARLLTRIEVASSMRKKKSLSWLLRGYIKGGHYGEAAETLIKMLDLGLSPDYLDRVAVMQ 452

Query: 457 GLRKEIREPESVHTYLDLCKCLSDANLIGPSLVYLHLQKHKLWIIKML 502
           GLRK I++  +V +YL LCK LSD NLIGPSLVYL+++K+KLWI+K+L
Sbjct: 453 GLRKRIQQWGNVESYLKLCKRLSDVNLIGPSLVYLYIKKYKLWIMKLL 500

[Close]

BLAST of CSPI06G13590 vs. TrEMBL
Match: F6GUM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07010 PE=4 SV=1)

HSP 1 Score: 729.9 bits (1883), Expect = 2.0e-207
Identity = 362/506 (71.54%), Postives = 425/506 (83.99%), Query Frame = 1


Query: 14  GFSFSLSSPLE---SQRCGFSTPRLYMVSP---------------ISCNYQDSTFSLSRA 73
           GF+ SL SP E   +    FS  R  ++ P                 CN+Q+  F + + 
Sbjct: 6   GFASSLMSPTELGFTLSSSFSIQRPRLIVPKFSRSFLGEYCSRATTICNHQNPRFVVPKR 65

Query: 74  AKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREI 133
            K R+ RLFKSVELDQF+TSDDEDEM +GFFEAIEELERMTREPSDVLEEMNDRLSARE+
Sbjct: 66  DKIREFRLFKSVELDQFLTSDDEDEMSEGFFEAIEELERMTREPSDVLEEMNDRLSAREL 125

Query: 134 QLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVV 193
           QLVLVYFSQEGRDSWCALEVFEWL+KENRVDKETMELMVSIMCSW+KKL+EG H+VGDVV
Sbjct: 126 QLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEHDVGDVV 185

Query: 194 DLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGP 253
           DLLVDMDCVGLKP FSMIEKVISLYWEM EKEKAV FVKEVL R +A+ +DD +GHKGGP
Sbjct: 186 DLLVDMDCVGLKPGFSMIEKVISLYWEMEEKEKAVLFVKEVLRREIAYSEDDGDGHKGGP 245

Query: 254 SGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGY 313
           +GYLAWKMM +G+YRGAVK+V+HLRESGL+PEVYSYLIAMTAVVKELNEFAKALRKLKG+
Sbjct: 246 TGYLAWKMMAEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGF 305

Query: 314 ARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQ 373
            + G +AELD  NVEL+ KYQ++LLADGV+LS+WV++EG S + GVV+ERLLAMYICAG+
Sbjct: 306 TKSGLIAELDAENVELIEKYQSDLLADGVRLSSWVIQEGRSPLHGVVYERLLAMYICAGR 365

Query: 374 GVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTW 433
           G+EAERQLWEMKLVGKEAD +LYDIVLAICAS+KE  A+ RLLT +E+TS + +KK+L+W
Sbjct: 366 GLEAERQLWEMKLVGKEADRELYDIVLAICASKKEASAISRLLTGMEVTSSIRRKKTLSW 425

Query: 434 LLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCL 493
           LLRGYIKG HF DA+ T++KM++LG  PEYLDR AVLQGLR  I++  +V TYL LCK L
Sbjct: 426 LLRGYIKGSHFDDASETIIKMLDLGLCPEYLDRAAVLQGLRNRIQQTGNVETYLKLCKHL 485

Query: 494 SDANLIGPSLVYLHLQKHKLWIIKML 502
           SDANLIGP LVYL+++K+KLWI+K +
Sbjct: 486 SDANLIGPCLVYLYIKKYKLWILKTI 511

[Close]

BLAST of CSPI06G13590 vs. TrEMBL
Match: W9R4F5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011688 PE=4 SV=1)

HSP 1 Score: 726.5 bits (1874), Expect = 2.2e-206
Identity = 362/516 (70.16%), Postives = 426/516 (82.56%), Query Frame = 1


Query: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSP---------------ISCNY 60
           M  AQGFTPLT+ GF  S SS   S        R+++                  I C  
Sbjct: 1   MASAQGFTPLTELGFPSSSSSSSSSSSNSLHRNRIFLCRMDENLWGRTSAKFCPVICCKQ 60

Query: 61  QDSTFSLSRAAKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEE 120
           Q+  F   + +K R+ RLF SVELDQF+TSDDE+EMG+GFFEAIEELERMTREPSDVLEE
Sbjct: 61  QNPNFIAPKPSKLREFRLFTSVELDQFLTSDDEEEMGEGFFEAIEELERMTREPSDVLEE 120

Query: 121 MNDRLSAREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLV 180
           MNDRLSARE+QLVLVYFSQEGRDSWCALEVFEWL+KENRVDKETMELMV++MCSW+KKL+
Sbjct: 121 MNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVTLMCSWVKKLI 180

Query: 181 EGRHNVGDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMK 240
           EG H+VGDVVDLLVDM CVGL+P FSM+E VI LYWEMGEK +AV FVKEVL R +A ++
Sbjct: 181 EGEHDVGDVVDLLVDMACVGLRPGFSMMENVILLYWEMGEKGRAVSFVKEVLRRGIACLE 240

Query: 241 DDWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEF 300
           DD EG KGGP+GYLAWKMMV+G+Y  AVK+V+ +RESGL+PEVYSYLIAMTAVVKELNEF
Sbjct: 241 DDGEGPKGGPTGYLAWKMMVEGNYMEAVKLVVDIRESGLKPEVYSYLIAMTAVVKELNEF 300

Query: 301 AKALRKLKGYARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHER 360
           AKALRKLKG+ R G  AELD+ +VEL+ KYQ++LL DGV+LSNWV+EEG +S+ GVVHER
Sbjct: 301 AKALRKLKGFERAGLTAELDEESVELIEKYQSDLLDDGVRLSNWVIEEGITSLNGVVHER 360

Query: 361 LLAMYICAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITS 420
           LLAMYICAG+G+EAERQLW+MKLVGKEAD DLYDIVLAICASQKE +A+ RLLTR+  +S
Sbjct: 361 LLAMYICAGRGIEAERQLWKMKLVGKEADGDLYDIVLAICASQKEGRAIARLLTRVNFSS 420

Query: 421 PMIKKKSLTWLLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESV 480
            + K+KSL+WLLRGYIKGGHF +AA T+VKM++LG  PEYLDR AVLQGLRK I+ P++V
Sbjct: 421 TLRKRKSLSWLLRGYIKGGHFDNAAETVVKMLDLGLCPEYLDRAAVLQGLRKRIKGPDTV 480

Query: 481 HTYLDLCKCLSDANLIGPSLVYLHLQKHKLWIIKML 502
            TYL LCK LSD NLIGP L+YL+++K+KLWI+KML
Sbjct: 481 ETYLKLCKHLSDYNLIGPCLIYLYIKKYKLWIMKML 516

[Close]

BLAST of CSPI06G13590 vs. TAIR10
Match: AT2G30100.1 (AT2G30100.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 602.8 bits (1553), Expect = 1.9e-172
Identity = 300/458 (65.50%), Postives = 366/458 (79.91%), Query Frame = 1


Query: 55  AAKFRDLRLFKSVELDQFITSDDED----EMGDGFFEAIEELERMTREPSDVLEEMNDRL 114
           A KFR++ L +SVELDQFITS++E+    E+G+GFFEAIEELERMTREPSD+LEEMN RL
Sbjct: 46  AGKFREMGLSRSVELDQFITSEEEEGEAEEIGEGFFEAIEELERMTREPSDILEEMNHRL 105

Query: 115 SAREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHN 174
           S+RE+QL+LVYF+QEGRDSWC LEVFEWL+KENRVD+E MELMVSIMC W+KKL+E   N
Sbjct: 106 SSRELQLMLVYFAQEGRDSWCTLEVFEWLKKENRVDEEIMELMVSIMCGWVKKLIEDECN 165

Query: 175 VGDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKD---- 234
              V DLL++MDCVGLKP FSM++KVI+LY EMG+KE AV FVKEVL R   F       
Sbjct: 166 AHQVFDLLIEMDCVGLKPGFSMMDKVIALYCEMGKKESAVLFVKEVLRRRDGFGYSVVGG 225

Query: 235 -DWEGHKGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEF 294
              EG KGGP GYLAWK MVDGDYR AV MV+ LR SGL+PE YSYLIAMTA+VKELN  
Sbjct: 226 GGSEGRKGGPVGYLAWKFMVDGDYRKAVDMVMELRLSGLKPEAYSYLIAMTAIVKELNSL 285

Query: 295 AKALRKLKGYARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEG--SSSIRGVVH 354
            K LR+LK +AR GFVAE+D ++  L+ KYQ+E L+ G+QL+ W +EEG  + SI GVVH
Sbjct: 286 GKTLRELKRFARAGFVAEIDDHDRVLIEKYQSETLSRGLQLATWAVEEGQENDSIIGVVH 345

Query: 355 ERLLAMYICAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEI 414
           ERLLAMYICAG+G EAE+QLW+MKL G+E +ADL+DIV+AICASQKE  A+ RLLTR+E 
Sbjct: 346 ERLLAMYICAGRGPEAEKQLWKMKLAGREPEADLHDIVMAICASQKEVNAVSRLLTRVEF 405

Query: 415 TSPMIKKKSLTWLLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPE 474
                KKK+L+WLLRGY+KGGHF +AA TLV MI+ G  PEY+DRVAV+QG+ ++I+ P 
Sbjct: 406 MGSQRKKKTLSWLLRGYVKGGHFEEAAETLVSMIDSGLHPEYIDRVAVMQGMTRKIQRPR 465

Query: 475 SVHTYLDLCKCLSDANLIGPSLVYLHLQKHKLWIIKML 502
            V  Y+ LCK L DA L+GP LVY+++ K+KLWI+KM+
Sbjct: 466 DVEAYMSLCKRLFDAGLVGPCLVYMYIDKYKLWIVKMM 503

[Close]

BLAST of CSPI06G13590 vs. TAIR10
Match: AT1G10910.1 (AT1G10910.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-07
Identity = 49/225 (21.78%), Postives = 98/225 (43.56%), Query Frame = 1


Query: 243 MMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGFVA 302
           ++ +G     +K+   ++  GL+P+V +Y   +   +K  N + KA              
Sbjct: 176 LVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKA-------------- 235

Query: 303 ELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAERQ 362
                 +EL+     EL  +G+Q+ +            V++  +LA+    G+  EAE  
Sbjct: 236 ------IELIG----ELPHNGIQMDS------------VMYGTVLAICASNGRSEEAENF 295

Query: 363 LWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGYIK 422
           + +MK+ G   +   Y  +L   + + + K    L+T ++    +  K  +T LL+ YIK
Sbjct: 296 IQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIK 355

Query: 423 GGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRK--EIREPESV 466
           GG F  +   L ++ + G+    +    ++ GL K  ++ E  S+
Sbjct: 356 GGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSI 364

[Close]

BLAST of CSPI06G13590 vs. NCBI nr
Match: gi|778713772|ref|XP_011657120.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucumis sativus])

HSP 1 Score: 1002.3 bits (2590), Expect = 3.0e-289
Identity = 500/501 (99.80%), Postives = 501/501 (100.00%), Query Frame = 1


Query: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSLSRAAKFRD 60
           MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFS+SRAAKFRD
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSVSRAAKFRD 60

Query: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120
           LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV
Sbjct: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120

Query: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180
           YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD
Sbjct: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180

Query: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA 240
           MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA
Sbjct: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA 240

Query: 241 WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGF 300
           WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGF
Sbjct: 241 WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGF 300

Query: 301 VAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAE 360
           VAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAE
Sbjct: 301 VAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAE 360

Query: 361 RQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGY 420
           RQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGY
Sbjct: 361 RQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGY 420

Query: 421 IKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANL 480
           IKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANL
Sbjct: 421 IKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANL 480

Query: 481 IGPSLVYLHLQKHKLWIIKML 502
           IGPSLVYLHLQKHKLWIIKML
Sbjct: 481 IGPSLVYLHLQKHKLWIIKML 501

[Close]

BLAST of CSPI06G13590 vs. NCBI nr
Match: gi|659130631|ref|XP_008465268.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucumis melo])

HSP 1 Score: 978.0 bits (2527), Expect = 6.2e-282
Identity = 487/501 (97.21%), Postives = 494/501 (98.60%), Query Frame = 1


Query: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSLSRAAKFRD 60
           MICAQGFTPLTQFGFSFSLSSPLE+QR GFSTPRLYMVSPISCNYQDSTFS+SRAAKFRD
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLETQRYGFSTPRLYMVSPISCNYQDSTFSVSRAAKFRD 60

Query: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120
           LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV
Sbjct: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120

Query: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180
           YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWI KLVEGRHNVGDVVDLLVD
Sbjct: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWINKLVEGRHNVGDVVDLLVD 180

Query: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA 240
           MDCVGLKPHFSMIEKVISLYWEMGEKEKA+FFVKEVLGRNLAFMKDDWEGHKGGPSGYLA
Sbjct: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAIFFVKEVLGRNLAFMKDDWEGHKGGPSGYLA 240

Query: 241 WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGF 300
           WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLK YARDG+
Sbjct: 241 WKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKSYARDGY 300

Query: 301 VAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAE 360
           VAELDKNNVELVAKYQTELLADGV+LSNWVLEEGSSSI GVVHERLLAMYICAGQGVEAE
Sbjct: 301 VAELDKNNVELVAKYQTELLADGVRLSNWVLEEGSSSIHGVVHERLLAMYICAGQGVEAE 360

Query: 361 RQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGY 420
           RQLWEMKL+GKEADADLYDIVLAICASQKE KAMKRLLTRIEITSPMIKKKSLTWLLRGY
Sbjct: 361 RQLWEMKLLGKEADADLYDIVLAICASQKEIKAMKRLLTRIEITSPMIKKKSLTWLLRGY 420

Query: 421 IKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANL 480
           IKGGHFRDAAGT+VKMINLGFLPEYLDRVAVLQGLRK IREPE VHTYLDLCKCLSDANL
Sbjct: 421 IKGGHFRDAAGTVVKMINLGFLPEYLDRVAVLQGLRKGIREPEIVHTYLDLCKCLSDANL 480

Query: 481 IGPSLVYLHLQKHKLWIIKML 502
           IGPSLVYLHLQKHKLWIIKML
Sbjct: 481 IGPSLVYLHLQKHKLWIIKML 501

[Close]

BLAST of CSPI06G13590 vs. NCBI nr
Match: gi|645216496|ref|XP_008221415.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Prunus mume])

HSP 1 Score: 741.9 bits (1914), Expect = 7.4e-211
Identity = 370/502 (73.71%), Postives = 427/502 (85.06%), Query Frame = 1


Query: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSLSRAAKFRD 60
           M  AQG   LT   F+      +  +  GFS      V P  C +Q   F +++++K RD
Sbjct: 1   MASAQGLASLTHSLFAVKRQRFMGLR--GFSAQSCARVFPRICKHQKPNFIVAKSSKVRD 60

Query: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120
            RLFKSVELDQF+TSDDEDEMG+GFFEAIEELERMTREPSDVLEEMNDRLSARE+QLVLV
Sbjct: 61  FRLFKSVELDQFLTSDDEDEMGEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVLV 120

Query: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180
           YFSQEGRDSWCALEVFEWL+KENRVDKETM+LMVSIMCSW+KKL++G H++GDVVDLLVD
Sbjct: 121 YFSQEGRDSWCALEVFEWLRKENRVDKETMDLMVSIMCSWVKKLIQGEHDIGDVVDLLVD 180

Query: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDD-WEGHKGGPSGYL 240
           MDCVGLKP FSM+EKVISLYWEMGEKEKAV FVKEVL R + + +DD  +GHKGGP+GYL
Sbjct: 181 MDCVGLKPSFSMMEKVISLYWEMGEKEKAVLFVKEVLRRGIVYSEDDDTDGHKGGPTGYL 240

Query: 241 AWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDG 300
           AWKMMV+G+YR +VK+V+HLRESGL+PEVYSYLIAMTAVVKELNE AKALRKLKG+ R G
Sbjct: 241 AWKMMVEGNYRDSVKLVIHLRESGLKPEVYSYLIAMTAVVKELNELAKALRKLKGFTRAG 300

Query: 301 FVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEA 360
            +AE D  NV L+ KYQ++LL+DGVQLSNWV++EGSSS+ GVVHERLLAMYIC+G+G+EA
Sbjct: 301 LIAEFDTENVGLIEKYQSDLLSDGVQLSNWVIQEGSSSLHGVVHERLLAMYICSGRGLEA 360

Query: 361 ERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRG 420
           ERQLWEMKLVGKEADA LYDIVLAICASQKE  A+ RLLTR E+TS + KKKSL+WLLRG
Sbjct: 361 ERQLWEMKLVGKEADAGLYDIVLAICASQKEASAIGRLLTRTEVTSSLRKKKSLSWLLRG 420

Query: 421 YIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDAN 480
           YIKGGHF DAA T++KM++LG  PE+LDR AVLQGLRK I+E   V TYL LCK LSDA+
Sbjct: 421 YIKGGHFDDAAETVIKMLDLGLCPEFLDRAAVLQGLRKSIQESGGVDTYLKLCKRLSDAS 480

Query: 481 LIGPSLVYLHLQKHKLWIIKML 502
           LIGP LVYL ++K+KLWIIKML
Sbjct: 481 LIGPCLVYLFIRKYKLWIIKML 500

[Close]

BLAST of CSPI06G13590 vs. NCBI nr
Match: gi|595823302|ref|XP_007205048.1| (hypothetical protein PRUPE_ppa004609mg [Prunus persica])

HSP 1 Score: 738.8 bits (1906), Expect = 6.3e-210
Identity = 369/502 (73.51%), Postives = 425/502 (84.66%), Query Frame = 1


Query: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSPISCNYQDSTFSLSRAAKFRD 60
           M  AQG   LT   F+      +  +  GFS      V P  C +Q   F +++++K RD
Sbjct: 1   MASAQGLASLTHSLFAVKRQRFMGLR--GFSAQSCGRVFPRICKHQKPNFIVAKSSKVRD 60

Query: 61  LRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLV 120
            RLFKSVELDQF+TSDDEDEMG+GFFEAIEELERMTREPSDVLEEMNDRLSARE+QLVLV
Sbjct: 61  FRLFKSVELDQFLTSDDEDEMGEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVLV 120

Query: 121 YFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVD 180
           YFSQEGRDSWCALEVFEWL+KENRVDKETM+LMVSIMCSW+KKL++  H++GDVVDLLVD
Sbjct: 121 YFSQEGRDSWCALEVFEWLRKENRVDKETMDLMVSIMCSWVKKLIQREHDIGDVVDLLVD 180

Query: 181 MDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMK-DDWEGHKGGPSGYL 240
           MDCVGLKP FSM+EKVISLYWEMGEKEKAV FVKEVL R + + + DD +GHKGGP+GYL
Sbjct: 181 MDCVGLKPSFSMMEKVISLYWEMGEKEKAVLFVKEVLKRGIVYSEEDDTDGHKGGPTGYL 240

Query: 241 AWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDG 300
           AWKMMV+G+YR +VK+V+HLRESGL+PEVYSYLIAMTAVVKELNE AKALRKLKG+ R G
Sbjct: 241 AWKMMVEGNYRDSVKLVIHLRESGLKPEVYSYLIAMTAVVKELNELAKALRKLKGFTRAG 300

Query: 301 FVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEA 360
            +AE D  NV L+ KYQ++LL+DGVQLSNWV++EGSSS+ GVVHERLLAMYIC+G G+EA
Sbjct: 301 LIAEFDTENVGLIEKYQSDLLSDGVQLSNWVIQEGSSSLHGVVHERLLAMYICSGHGLEA 360

Query: 361 ERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRG 420
           ERQLWEMKLVGKEADADLYDIVLAICASQKE  A+ RLLTR E+TS + KKKSL+WLLRG
Sbjct: 361 ERQLWEMKLVGKEADADLYDIVLAICASQKEASAIGRLLTRTEVTSSLRKKKSLSWLLRG 420

Query: 421 YIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDAN 480
           YIKGGHF DAA T++KM++LG  PE+LDR AVLQGLRK I+E   V TYL LCK LSDA+
Sbjct: 421 YIKGGHFDDAAETVIKMLDLGLCPEFLDRAAVLQGLRKSIQESGGVDTYLKLCKRLSDAS 480

Query: 481 LIGPSLVYLHLQKHKLWIIKML 502
           LIGP LVYL ++K+KLWI KML
Sbjct: 481 LIGPCLVYLFIRKYKLWITKML 500

[Close]

BLAST of CSPI06G13590 vs. NCBI nr
Match: gi|731391774|ref|XP_010650876.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 731.5 bits (1887), Expect = 1.0e-207
Identity = 363/506 (71.74%), Postives = 426/506 (84.19%), Query Frame = 1


Query: 14  GFSFSLSSPLE---SQRCGFSTPRLYMVSP---------------ISCNYQDSTFSLSRA 73
           GF+ SL SP E   +    FS  R  ++ P                 CN+Q+  F + + 
Sbjct: 6   GFASSLMSPTELGFTLSSSFSIQRPRLIVPKFSRSFLGEYCSRATTICNHQNPRFVVPKR 65

Query: 74  AKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREI 133
            K R+ RLFKSVELDQF+TSDDEDEM +GFFEAIEELERMTREPSDVLEEMNDRLSARE+
Sbjct: 66  DKIREFRLFKSVELDQFLTSDDEDEMSEGFFEAIEELERMTREPSDVLEEMNDRLSAREL 125

Query: 134 QLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVV 193
           QLVLVYFSQEGRDSWCALEVFEWL+KENRVDKETMELMVSIMCSW+KKL+EG H+VGDVV
Sbjct: 126 QLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEHDVGDVV 185

Query: 194 DLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGP 253
           DLLVDMDCVGLKP FSMIEKVISLYWEM EKEKAV FVKEVL R +A+ +DD +GHKGGP
Sbjct: 186 DLLVDMDCVGLKPGFSMIEKVISLYWEMEEKEKAVLFVKEVLRREIAYSEDDGDGHKGGP 245

Query: 254 SGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGY 313
           +GYLAWKMMV+G+YRGAVK+V+HLRESGL+PEVYSYLIAMTAVVKELNEFAKALRKLKG+
Sbjct: 246 TGYLAWKMMVEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGF 305

Query: 314 ARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQ 373
            + G +AELD  NVEL+ KYQ++LLADGV+LS+WV++EG S + GVV+ERLLAMYICAG+
Sbjct: 306 TKSGLIAELDAENVELIEKYQSDLLADGVRLSSWVIQEGRSPLHGVVYERLLAMYICAGR 365

Query: 374 GVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTW 433
           G+EAERQLWEMKLVGKEAD +LYDIVLAICAS+KE  A+ RLLT +E+TS + +KK+L+W
Sbjct: 366 GLEAERQLWEMKLVGKEADRELYDIVLAICASKKEASAISRLLTGMEVTSSIRRKKTLSW 425

Query: 434 LLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCL 493
           LLRGYIKG HF DA+ T++KM++LG  PEYLDR AVLQGLR  I++  +V TYL LCK L
Sbjct: 426 LLRGYIKGSHFDDASETIIKMLDLGLCPEYLDRAAVLQGLRNRIQQTGNVETYLKLCKHL 485

Query: 494 SDANLIGPSLVYLHLQKHKLWIIKML 502
           SDANLIGP LVYL+++K+KLWI+K +
Sbjct: 486 SDANLIGPCLVYLYIKKYKLWILKTI 511

The following BLAST results are available for this feature:

BLAST of CSPI06G13590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP176_ARATH	3.4e-171	65.50	Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidop...	[more]
PPR31_ARATH	3.4e-06	21.78	Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidop...	[more]

BLAST of CSPI06G13590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC35_CUCSA	2.1e-289	99.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G182120 PE=4 SV=1	[more]
M5VXS0_PRUPE	4.4e-210	73.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004609mg PE=4 SV=1	[more]
B9HNB9_POPTR	9.1e-208	76.50	Ubiquitin family protein OS=Populus trichocarpa GN=POPTR_0009s07900g PE=4 SV=1	[more]
F6GUM4_VITVI	2.0e-207	71.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07010 PE=4 SV=...	[more]
W9R4F5_9ROSA	2.2e-206	70.16	Uncharacterized protein OS=Morus notabilis GN=L484_011688 PE=4 SV=1	[more]

BLAST of CSPI06G13590 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30100.1	1.9e-172	65.50	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G10910.1	1.9e-07	21.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CSPI06G13590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778713772\|ref\|XP_011657120.1\|	3.0e-289	99.80	PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ...	[more]
gi\|659130631\|ref\|XP_008465268.1\|	6.2e-282	97.21	PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ...	[more]
gi\|645216496\|ref\|XP_008221415.1\|	7.4e-211	73.71	PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ...	[more]
gi\|595823302\|ref\|XP_007205048.1\|	6.3e-210	73.51	hypothetical protein PRUPE_ppa004609mg [Prunus persica]	[more]
gi\|731391774\|ref\|XP_010650876.1\|	1.0e-207	71.74	PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G13590.1	CSPI06G13590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 87..288 score: 1.6E-94coord: 338..444 score: 1.6
None	No IPR available	PANTHER	PTHR24015:SF683	SUBFAMILY NOT NAMED	coord: 338..444 score: 1.6E-94coord: 87..288 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G13590	Cla013378	Watermelon (97103) v1	cpiwmB530
CSPI06G13590	Csa6G182120	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G13590	MELO3C026835	Melon (DHL92) v3.5.1	cpimeB411
CSPI06G13590	ClCG02G019390	Watermelon (Charleston Gray)	cpiwcgB458
CSPI06G13590	Lsi10G014490	Bottle gourd (USVL1VR-Ls)	cpilsiB416
CSPI06G13590	MELO3C026835.2	Melon (DHL92) v3.6.1	cpimedB432
CSPI06G13590	CsaV3_6G016010	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G13590	Cla97C02G045380	Watermelon (97103) v2	cpiwmbB451
CSPI06G13590	Bhi10G000650	Wax gourd	cpiwgoB610
CSPI06G13590	Cucsa.139390	Cucumber (Gy14) v1	cgycpiB205
CSPI06G13590	CmaCh20G003360	Cucurbita maxima (Rimu)	cmacpiB559
CSPI06G13590	CmoCh20G003610	Cucurbita moschata (Rifu)	cmocpiB548
CSPI06G13590	Cp4.1LG16g06550	Cucurbita pepo (Zucchini)	cpecpiB292
CSPI06G13590	CsGy6G013570	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G13590	Carg23865	Silver-seed gourd	carcpiB0551
CSPI06G13590	Carg03372	Silver-seed gourd	carcpiB0373

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G13590	Cucumber (Chinese Long) v2	cpicuB311
CSPI06G13590	Watermelon (Charleston Gray)	cpiwcgB519
CSPI06G13590	Watermelon (97103) v1	cpiwmB507
CSPI06G13590	Cucurbita pepo (Zucchini)	cpecpiB755
CSPI06G13590	Silver-seed gourd	carcpiB0426
CSPI06G13590	Cucumber (Chinese Long) v3	cpicucB360
CSPI06G13590	Watermelon (97103) v2	cpiwmbB510
CSPI06G13590	Wax gourd	cpiwgoB648
CSPI06G13590	Wild cucumber (PI 183967)	cpicpiB184
CSPI06G13590	Cucurbita maxima (Rimu)	cmacpiB622
CSPI06G13590	Cucurbita moschata (Rifu)	cmocpiB615