Carg23865 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23865
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_345 : 174460 .. 175812 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATATATCGTTCGCCGGTAACATTTTTCTTTATGCTTCCTCGTATTACTTGCAACCACCAGAATTCTACTTTGTTTTGATAGCCGCTAAGTTTCGGGACCTAAGGTTGTTCTAATCAGTTGAGCTGGACCTTACGAGTGACAGATGAAGACGAAATGGAAGATGGATATTTTAGGCAATCAAGGAATTGGAAGAACGATTGTTAAAAAATCATCACTAGGACATAGGATCAAGCCCAATATAATTGTACGAGCCAATGTCTATAAATATTTAGACATTTTAGAAATAAATCTACAAGTTTTTGATCCCAAGCGTAATATCTACAGAGTTGTGTTCAACAACCATTCGAGGTTCTTGGAGAAATGAATGACCGTGTTTCAGCGAGGGAATCAGAGCTCGTGCTTGTGTGCTTCTCTCAGGAAGGGAGAGATTTATGGTGTGCTCTTGAGGCTTTAGCTCTTCAATCATTGTTTACTAGCTTTGGATGTCATATTTTGAATCCTCAATTTCTGATCATTGAGATTGCTTAGTCTACCTTCTTTAATCTACTCCTCTAGTTTACTCATTTAGGTGGTTAGTATCTTGATCTTATTGGATTTTGATTATGATCACTGTATTGAGACCAGATTTTTGTTGTGGTGACTTTCTTCAATGTGATAAAGGATATTTTCTGGCGTTGTGTTTGTGTAGTCACAATTGAAGGGGTTCTGGAAGAACTGTGCAAGTTTTTAACATAGAGCTAGATGGGCGTCCACTTGGGACGATGTATGGTTAAGCTGCATTCTAATATGGGTATGCATGTTTGAACCTACTGTTATGTTAGTGTTGGATATAAGTTTATTTCTGCAGACAAGGATTTGGAAAAACCATGAATAACTTCCTTCGGGTTTTTTTTTTTCACTTGAACCTTGTTGTTGTTAGTTTCATTCACTGAAATTTTTTTGTTTATTGTCATCTTCTTTGGAGCTTATTCCCCCAGTAGTCACAGTATACCTCGTTCTGATCTCTTCCATAAGTCATTTTTCAGTTGTTGAATTGGCTTTTAATGTCGCTATTTATGTTGTAATGGTAGTGGATTGGTTGCCCAGGGATCTTAAATAAGTTCTTTCAAATTGCTATGCTTGTTCAGTACAACTTCAAGTGAAAATTCAATTGCTAATGATGATAATCAATCCTCCTAGGTTGATGCTGACTATAGAGGTGCAGAGAAAATGCTGCTGCATCTTAGACATTCTGGATTAAACCCAGAGGTATATAGCTATCTCATCGCCATGACTGTTTTGGTTAAAGAGTTTAATGAATTAGCAAAAGCTCTACACGAACTCAAAGTTGTGCAAGAGAGGGGATAG

mRNA sequence

ATGATTATATATCGTTCGCCGGTTGATGCTGACTATAGAGGTGCAGAGAAAATGCTGCTGCATCTTAGACATTCTGGATTAAACCCAGAGGTATATAGCTATCTCATCGCCATGACTGTTTTGGTTAAAGAGTTTAATGAATTAGCAAAAGCTCTACACGAACTCAAAGTTGTGCAAGAGAGGGGATAG

Coding sequence (CDS)

ATGATTATATATCGTTCGCCGGTTGATGCTGACTATAGAGGTGCAGAGAAAATGCTGCTGCATCTTAGACATTCTGGATTAAACCCAGAGGTATATAGCTATCTCATCGCCATGACTGTTTTGGTTAAAGAGTTTAATGAATTAGCAAAAGCTCTACACGAACTCAAAGTTGTGCAAGAGAGGGGATAG

Protein sequence

MIIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG

Homology

[Close]

BLAST of Carg23865 vs. NCBI nr
Match: XP_022947356.1 (uncharacterized protein LOC111451243 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 13  RGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQERG 63
           RGAEKMLLH R SGLNPEVY YLIAMTVLVKEFNELAKALH+L+VVQERG
Sbjct: 76  RGAEKMLLHRRLSGLNPEVYGYLIAMTVLVKEFNELAKALHKLEVVQERG 125

[Close]

BLAST of Carg23865 vs. NCBI nr
Match: XP_022148369.1 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYRGA K++LHLR SGLNPEVYSYLIAMT +VKE NE AKAL +LK
Sbjct: 249 LAWKMMVDGDYRGAVKLVLHLRESGLNPEVYSYLIAMTAVVKELNEFAKALRKLK 303

[Close]

BLAST of Carg23865 vs. NCBI nr
Match: XP_008465268.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Sbjct: 239 LAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLK 293

[Close]

BLAST of Carg23865 vs. NCBI nr
Match: XP_011657120.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucumis sativus] >KGN47058.1 hypothetical protein Csa_6G182120 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Sbjct: 239 LAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLK 293

[Close]

BLAST of Carg23865 vs. NCBI nr
Match: XP_022944005.1 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYRGA KM+L+LR SGL PEVY YLIAMT +VKE NE AKAL +LK
Sbjct: 248 LAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCYLIAMTAVVKELNEFAKALRKLK 302

[Close]

BLAST of Carg23865 vs. TAIR10
Match: AT2G30100.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-11
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYR A  M++ LR SGL PE YSYLIAMT +VKE N L K L ELK
Sbjct: 239 LAWKFMVDGDYRKAVDMVMELRLSGLKPEAYSYLIAMTAIVKELNSLGKTLRELK 293

[Close]

BLAST of Carg23865 vs. Swiss-Prot
Match: sp|Q0WNN7|PP176_ARATH (Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g30100 PE=2 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-10
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYR A  M++ LR SGL PE YSYLIAMT +VKE N L K L ELK
Sbjct: 239 LAWKFMVDGDYRKAVDMVMELRLSGLKPEAYSYLIAMTAIVKELNSLGKTLRELK 293

[Close]

BLAST of Carg23865 vs. TrEMBL
Match: tr|A0A1S3CNE0|A0A1S3CNE0_CUCME (pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502924 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-12
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Sbjct: 239 LAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLK 293

[Close]

BLAST of Carg23865 vs. TrEMBL
Match: tr|A0A0A0KC35|A0A0A0KC35_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G182120 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-12
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELK 57
           + ++  VD DYRGA KM+LHLR SGL PEVYSYLIAMT +VKE NE AKAL +LK
Sbjct: 239 LAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLK 293

[Close]

BLAST of Carg23865 vs. TrEMBL
Match: tr|F6GUM4|F6GUM4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07010 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQER 61
           + ++   + +YRGA K+++HLR SGL PEVYSYLIAMT +VKE NE AKAL +LK   + 
Sbjct: 249 LAWKMMAEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGFTKS 308

Query: 62  G 63
           G
Sbjct: 309 G 309

[Close]

BLAST of Carg23865 vs. TrEMBL
Match: tr|A0A059D4A9|A0A059D4A9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02230 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-10
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQER 61
           + ++  VD  YR A K+++HLR SGL PEVYSYLIAMT +VKE NE AKAL  LK + + 
Sbjct: 247 LAWKMMVDGKYRDAVKLVIHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRRLKGLAKD 306

Query: 62  G 63
           G
Sbjct: 307 G 307

[Close]

BLAST of Carg23865 vs. TrEMBL
Match: tr|A0A2P4NAQ4|A0A2P4NAQ4_QUESU (Pentatricopeptide repeat-containing protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_45596 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-10
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 2   IIYRSPVDADYRGAEKMLLHLRHSGLNPEVYSYLIAMTVLVKEFNELAKALHELKVVQER 61
           + ++  VD +YR A K++++LR SGL PEVYSYLIAMT +VKE NELAKAL +LK     
Sbjct: 253 LAWKMMVDGNYRDAVKLVINLRESGLKPEVYSYLIAMTAVVKELNELAKALRKLKSFARA 312

Query: 62  G 63
           G
Sbjct: 313 G 313

The following BLAST results are available for this feature:

BLAST of Carg23865 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947356.1	6.3e-15	90.00	uncharacterized protein LOC111451243 [Cucurbita moschata]	[more]
XP_022148369.1	2.9e-12	69.09	pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Momordica ...	[more]
XP_008465268.1	6.5e-12	69.09	PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ...	[more]
XP_011657120.1	6.5e-12	69.09	PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic ...	[more]
XP_022944005.1	1.6e-10	65.45	pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucurbita ...	[more]

BLAST of Carg23865 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30100.1	1.8e-11	58.18	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of Carg23865 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0WNN7\|PP176_ARATH	3.2e-10	58.18	Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidop...	[more]

BLAST of Carg23865 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CNE0\|A0A1S3CNE0_CUCME	4.3e-12	69.09	pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucumis ...	[more]
tr\|A0A0A0KC35\|A0A0A0KC35_CUCSA	4.3e-12	69.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G182120 PE=4 SV=1	[more]
tr\|F6GUM4\|F6GUM4_VITVI	4.0e-10	55.74	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07010 PE=4 SV=...	[more]
tr\|A0A059D4A9\|A0A059D4A9_EUCGR	5.3e-10	57.38	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02230 PE=4 SV...	[more]
tr\|A0A2P4NAQ4\|A0A2P4NAQ4_QUESU	6.9e-10	57.38	Pentatricopeptide repeat-containing protein, chloroplastic OS=Quercus suber OX=5...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23865-RA	Carg23865-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23865	Cla013378	Watermelon (97103) v1	carwmB0512
Carg23865	Csa6G182120	Cucumber (Chinese Long) v2	carcuB0544
Carg23865	MELO3C026835	Melon (DHL92) v3.5.1	carmeB0519
Carg23865	ClCG02G019390	Watermelon (Charleston Gray)	carwcgB0501
Carg23865	CSPI06G13590	Wild cucumber (PI 183967)	carcpiB0551
Carg23865	Cucsa.139390	Cucumber (Gy14) v1	carcgyB0591
Carg23865	CmaCh20G003360	Cucurbita maxima (Rimu)	carcmaB0723
Carg23865	CmoCh20G003610	Cucurbita moschata (Rifu)	carcmoB0700
Carg23865	Lsi10G014490	Bottle gourd (USVL1VR-Ls)	carlsiB469
Carg23865	Cp4.1LG16g06550	Cucurbita pepo (Zucchini)	carcpeB0727
Carg23865	CsGy6G013570	Cucumber (Gy14) v2	carcgybB0520
Carg23865	MELO3C026835.2	Melon (DHL92) v3.6.1	carmedB0525
Carg23865	CsaV3_6G016010	Cucumber (Chinese Long) v3	carcucB0550
Carg23865	Cla97C02G045380	Watermelon (97103) v2	carwmbB0539
Carg23865	Bhi10G000650	Wax gourd	carwgoB0626

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23865	Carg03372	Silver-seed gourd	carcarB357

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23865	Cucurbita maxima (Rimu)	carcmaB0724
Carg23865	Cucurbita moschata (Rifu)	carcmoB0701
Carg23865	Cucurbita pepo (Zucchini)	carcpeB0728
Carg23865	Watermelon (97103) v2	carwmbB0540
Carg23865	Wax gourd	carwgoB0627