CmaCh19G008560 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G008560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGenomic DNA, chromosome 3, P1 clone:MJG19
LocationCma_Chr19 : 8026201 .. 8026710 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAGTGATTTCAGCTTCTGTGCTCTCTGCAATGGTGTTTTACTCATCTCTCCTCCCTTTCCTCCACTCTTTGAACCTTTATATCTCTGCAACAATCCATAAAAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAACTCCGGTCTTATCAGTAGCTCTGGCCGCGAACAGTGCGGCGGACATGGCAGCAGAGAAGCTGAAGCTCTAGGGGCTGCAATGGAGGATTCCACCACAATAATTGAGAGAAAAGTTGAAGATGGAGAAGAAAGGGAAAATGGGTTTATTGCAGAAGAAGAACAAGAAAGTGAAAGATTGGTTACAGAAGAAGAACAACAACAAGAACACGAAGAAGAACAAGAAGAAGAAAAAGCAGAAGCAGAAGAAGTTGGGGCTTTGAGCAATGAAGAATTGGACAAGAAATTTGAAGAATTTATCAGAAAAATGAAGGCAGGAATCAAACTGGAATCACAACAAGTGCTTATTTTGTAA

mRNA sequence

ATGAAGTTAGTGATTTCAGCTTCTGTGCTCTCTGCAATGGTGTTTTACTCATCTCTCCTCCCTTTCCTCCACTCTTTGAACCTTTATATCTCTGCAACAATCCATAAAAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAACTCCGGTCTTATCAGTAGCTCTGGCCGCGAACAGTGCGGCGGACATGGCAGCAGAGAAGCTGAAGCTCTAGGGGCTGCAATGGAGGATTCCACCACAATAATTGAGAGAAAAGTTGAAGATGGAGAAGAAAGGGAAAATGGGTTTATTGCAGAAGAAGAACAAGAAAGTGAAAGATTGGTTACAGAAGAAGAACAACAACAAGAACACGAAGAAGAACAAGAAGAAGAAAAAGCAGAAGCAGAAGAAGTTGGGGCTTTGAGCAATGAAGAATTGGACAAGAAATTTGAAGAATTTATCAGAAAAATGAAGGCAGGAATCAAACTGGAATCACAACAAGTGCTTATTTTGTAA

Coding sequence (CDS)

ATGAAGTTAGTGATTTCAGCTTCTGTGCTCTCTGCAATGGTGTTTTACTCATCTCTCCTCCCTTTCCTCCACTCTTTGAACCTTTATATCTCTGCAACAATCCATAAAAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAACTCCGGTCTTATCAGTAGCTCTGGCCGCGAACAGTGCGGCGGACATGGCAGCAGAGAAGCTGAAGCTCTAGGGGCTGCAATGGAGGATTCCACCACAATAATTGAGAGAAAAGTTGAAGATGGAGAAGAAAGGGAAAATGGGTTTATTGCAGAAGAAGAACAAGAAAGTGAAAGATTGGTTACAGAAGAAGAACAACAACAAGAACACGAAGAAGAACAAGAAGAAGAAAAAGCAGAAGCAGAAGAAGTTGGGGCTTTGAGCAATGAAGAATTGGACAAGAAATTTGAAGAATTTATCAGAAAAATGAAGGCAGGAATCAAACTGGAATCACAACAAGTGCTTATTTTGTAA

Protein sequence

MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSSGREQCGGHGSREAEALGAAMEDSTTIIERKVEDGEERENGFIAEEEQESERLVTEEEQQQEHEEEQEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL
BLAST of CmaCh19G008560 vs. TrEMBL
Match: A0A0A0K349_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G032240 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34
Identity = 110/170 (64.71%), Postives = 127/170 (74.71%), Query Frame = 1

Query: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI ++
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60

Query: 61  GREQCGGHGSREAEALGAA-MEDSTTIIERKVEDGEERENGFIAEEEQESERLVTEEEQQ 120
             E+  G+     EALGAA M D    IE KVE  EER NG +  E++  E L+T+ E +
Sbjct: 61  SDERSSGN-----EALGAATMADGNRKIESKVEIEEERGNGLVVNEDK-IENLITDNEVE 120

Query: 121 QEHEEEQEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 170
           +E     EEE  E EE+    +EEL+KK EEFIRKMKAGIK ESQQ+ IL
Sbjct: 121 EERFMSYEEE--EEEEI----DEELNKKCEEFIRKMKAGIKFESQQLFIL 158

BLAST of CmaCh19G008560 vs. TrEMBL
Match: A5BT69_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044034 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.3e-12
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 1

Query: 1   MKLVISASVLSAMVFYSSLLPFL-HSLNLYISAT--------IHKNYMFLLCNGLLVFIV 60
           ++ ++S S  S ++ YSSL+  L HS N Y S          I ++Y+FLLCNG+LVFIV
Sbjct: 22  IQFLLSLSFFSFLLSYSSLVLVLPHSFNFYFSTFSMKLHDYGIDRHYIFLLCNGILVFIV 81

Query: 61  RNSGLISSS---GREQCGGHGSREAEALGAAME-------DSTTIIERKVEDGEERENGF 120
           +NSGLI++S   G +     G +  ++ G A E        +      +VE+ E RENG 
Sbjct: 82  KNSGLINNSPSWGTDH-NDVGIKNRDSQGPAPEFYKIKPLAAREKAVMEVEEEEGRENGL 141

Query: 121 IAEEEQESERLVTEEEQQQEHE-------EEQEEEKAEAEEVGALSNEELDKKFEEFIRK 169
           +  EE+    +  EEE+Q   E       EE+EEE+AE EE G LS EEL+KK ++FI+K
Sbjct: 142 VITEEEVDVEVEEEEERQMGQENWFLVIKEEEEEEEAE-EETGLLSAEELNKKCDDFIKK 201

BLAST of CmaCh19G008560 vs. TrEMBL
Match: A0A0D2QYQ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G449600 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 70/208 (33.65%), Postives = 109/208 (52.40%), Query Frame = 1

Query: 2   KLVISASVLSAMVFYSSLLPFLHSLNL---------YISATIHKNYMFLLCNGLLVFIVR 61
           +L++S S+ S    +S  L   HS +          +IS  I KN++FLLCNGLLVF+ +
Sbjct: 28  QLLLSVSIFSLFFSHSYCLSLFHSFSFTFHNTLAFKFISHNIDKNFIFLLCNGLLVFLAK 87

Query: 62  NSGLISSSGREQ--CGGHGSREA--------EALGAAMEDSTTIIERK------------ 121
            SGLISSS ++      H + ++        +     ++ ST ++E +            
Sbjct: 88  FSGLISSSSQQSNLSDDHYNHQSFKSYTYIPQTESTRLDTSTPLLELEKEENAGFVEGEE 147

Query: 122 ---------VEDGEERENGFIAEEEQESERLVTEEEQQQEHEEEQEEEKAEAEEVGALSN 170
                    VED EE E     EEE+E E    + E+ + +E E+EEE+   E    LS 
Sbjct: 148 KGSSIDEPFVEDNEESETYEPEEEEEEEEEEEADIEESETYEPEEEEEEELMEGNNVLST 207

BLAST of CmaCh19G008560 vs. TrEMBL
Match: A0A067L5D4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01046 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-10
Identity = 79/221 (35.75%), Postives = 108/221 (48.87%), Query Frame = 1

Query: 2   KLVISASVLSAMVFYSSLLPFLHSLNLYISA--------TIHKNYMFLLCNGLLVFIVRN 61
           +L++S SV S ++  S+ L FLHS N   S         TI K  +FL+CNGLLVF+ + 
Sbjct: 26  QLLLSVSVFSLILSNSARLSFLHSFNFCFSTVPVQLFSHTIDKKCLFLICNGLLVFVAKF 85

Query: 62  SGLISSSGREQCGGHGSR-----------------EAEALGAAMEDSTTIIERKVED--- 121
           SGL+++S         S+                 + E     ++ S + +    ED   
Sbjct: 86  SGLVTTSDDNNNDNSSSKNYNSHNNSIGYSVKNYEDDEPPTLKLDSSKSPMLENTEDLMD 145

Query: 122 ----------GEERENGFIAEEEQESERLVTEEEQQQEH---------------EEEQEE 170
                      E REN    EEE+ESE LV E++  QE                EEE+EE
Sbjct: 146 QENVSAAAAEVETRENDKEIEEEKESEFLVQEDDGGQEEVKEFDDKFLIHEDYQEEEEEE 205

BLAST of CmaCh19G008560 vs. TrEMBL
Match: A0A061DU36_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002397 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-09
Identity = 66/183 (36.07%), Postives = 102/183 (55.74%), Query Frame = 1

Query: 2   KLVISASVLSAMVFYSSLLPF---LHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLIS 61
           K+++  SVLS ++ Y  L  F    + L L+ + +I KNYMFLLCNGLLVFI  +SGLI 
Sbjct: 63  KILVPLSVLSVILSYPLLCNFHILAYGLQLF-NFSIGKNYMFLLCNGLLVFIATSSGLIR 122

Query: 62  SSG------------REQCGGHGSREAEALGAAMEDSTTIIERKVEDGEERENGFIAEEE 121
           SS             R+ C      E+     ++E +   IE  +E  E + +     + 
Sbjct: 123 SSSVKTDSKAEKTIKRKGCSQREQLESSEKKGSIEKAKVTIEVDLEARESQMDSLALVQG 182

Query: 122 QESERLVTEEEQQQEHEEEQEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQV 170
            E   +V ++E +++  E    E+ E E +G +S EEL+KK EEFIRKMK GI+ E++Q+
Sbjct: 183 TEDVPVVVQDEGEEQSSELIVVEEDEDEGLGLMSKEELNKKCEEFIRKMKEGIQFEARQL 242

BLAST of CmaCh19G008560 vs. NCBI nr
Match: gi|659124282|ref|XP_008462077.1| (PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 114/177 (64.41%), Postives = 129/177 (72.88%), Query Frame = 1

Query: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI ++
Sbjct: 78  MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 137

Query: 61  GREQCGGHGSREAEALGAA-MEDSTTIIERKVEDG--EERENGFIAEEEQESERLVTEEE 120
             EQ     S   EALGA  M D    IE KVE    EER NG +  EE+  E L+T+ E
Sbjct: 138 CNEQ-----SSRNEALGAVTMADGNRKIESKVEVEVEEERRNGLVVNEEK-FENLITDNE 197

Query: 121 QQQEH-----EEEQEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 170
            ++E      EEE+EEE+ E EE     +EEL+KK EEFIRKMKAGIK ESQQ+ IL
Sbjct: 198 DEEERFISYEEEEEEEEEEEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 248

BLAST of CmaCh19G008560 vs. NCBI nr
Match: gi|778723509|ref|XP_011658666.1| (PREDICTED: uncharacterized protein LOC105436067 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-34
Identity = 110/170 (64.71%), Postives = 127/170 (74.71%), Query Frame = 1

Query: 1   MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60
           MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLI ++
Sbjct: 1   MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60

Query: 61  GREQCGGHGSREAEALGAA-MEDSTTIIERKVEDGEERENGFIAEEEQESERLVTEEEQQ 120
             E+  G+     EALGAA M D    IE KVE  EER NG +  E++  E L+T+ E +
Sbjct: 61  SDERSSGN-----EALGAATMADGNRKIESKVEIEEERGNGLVVNEDK-IENLITDNEVE 120

Query: 121 QEHEEEQEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 170
           +E     EEE  E EE+    +EEL+KK EEFIRKMKAGIK ESQQ+ IL
Sbjct: 121 EERFMSYEEE--EEEEI----DEELNKKCEEFIRKMKAGIKFESQQLFIL 158

BLAST of CmaCh19G008560 vs. NCBI nr
Match: gi|645247608|ref|XP_008229915.1| (PREDICTED: uncharacterized protein LOC103329252 [Prunus mume])

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 79/198 (39.90%), Postives = 118/198 (59.60%), Query Frame = 1

Query: 1   MKLVISASVLSAMVFYSSLLPFL-HSLNLYISA--------TIHKNYMFLLCNGLLVFIV 60
           +KL++S SVLS ++ YSSL+ FL HS N + SA        +  KNYMFLLCNGLLVFIV
Sbjct: 27  IKLLLSVSVLSILLSYSSLVSFLLHSFNAFTSAAPVKLFSYSFDKNYMFLLCNGLLVFIV 86

Query: 61  RNSGLISSS--GREQCGG--HGSREAEALGAAMEDSTT--------IIERKVEDGEEREN 120
           +NSGLI +S  G        H  + +E     +E + T        ++  +VE+ +ERE+
Sbjct: 87  KNSGLIGTSPPGSTNLNNDEHAPKNSENPQRVVELAETKAPKAKEEVVNMEVEEEQERED 146

Query: 121 G----FIAEEEQESER-LVTEEEQQQEHEEE----QEEEKAEAEEVGALSNEELDKKFEE 169
                 + EEE+E +R L+T+ E+++         ++ +  E E + +LS EEL+KK ++
Sbjct: 147 DEIFITVEEEEEEDKRVLITQAEEEEGCRNSSIMVEDHDAYEEEGIESLSREELNKKCDD 206

BLAST of CmaCh19G008560 vs. NCBI nr
Match: gi|694432198|ref|XP_009343464.1| (PREDICTED: uncharacterized protein LOC103935423 [Pyrus x bretschneideri])

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-12
Identity = 74/190 (38.95%), Postives = 108/190 (56.84%), Query Frame = 1

Query: 1   MKLVISASVLSAMVFYSSLLPF-LHSLNLYISA------TIHKNYMFLLCNGLLVFIVRN 60
           +K ++S SV S ++ YSSL+PF LHS N + S+      T  K Y+FLLCNGLLVFIV+N
Sbjct: 25  IKFLLSVSVFSVLLSYSSLIPFSLHSFNSFTSSVNFFSYTFDKKYVFLLCNGLLVFIVKN 84

Query: 61  SGLISSSGREQCG----GHGSREAEALGAAME-DSTTIIER----------KVEDGEERE 120
           SGL+ +S RE        H  +  E+   A E + T + E           ++E  + RE
Sbjct: 85  SGLVGTSPRESSNLNNNDHVPKSIESGQKAAELEETKVTEAPQAKEEVSNVEMEQTKVRE 144

Query: 121 NGFIAEEEQESERLVTEEEQQQEHEEE---QEEEKAEAEEVGALSNEELDKKFEEFIRKM 166
           +  +  EE+E   L+T EE+ +         + +  E E +  LS EEL+KK ++FIR+M
Sbjct: 145 DEILVSEEEEKRVLITVEEEDECCRNNFVLDDHDMYEEEGIEVLSAEELNKKCDDFIRRM 204

BLAST of CmaCh19G008560 vs. NCBI nr
Match: gi|147860680|emb|CAN79287.1| (hypothetical protein VITISV_044034 [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 1

Query: 1   MKLVISASVLSAMVFYSSLLPFL-HSLNLYISAT--------IHKNYMFLLCNGLLVFIV 60
           ++ ++S S  S ++ YSSL+  L HS N Y S          I ++Y+FLLCNG+LVFIV
Sbjct: 22  IQFLLSLSFFSFLLSYSSLVLVLPHSFNFYFSTFSMKLHDYGIDRHYIFLLCNGILVFIV 81

Query: 61  RNSGLISSS---GREQCGGHGSREAEALGAAME-------DSTTIIERKVEDGEERENGF 120
           +NSGLI++S   G +     G +  ++ G A E        +      +VE+ E RENG 
Sbjct: 82  KNSGLINNSPSWGTDH-NDVGIKNRDSQGPAPEFYKIKPLAAREKAVMEVEEEEGRENGL 141

Query: 121 IAEEEQESERLVTEEEQQQEHE-------EEQEEEKAEAEEVGALSNEELDKKFEEFIRK 169
           +  EE+    +  EEE+Q   E       EE+EEE+AE EE G LS EEL+KK ++FI+K
Sbjct: 142 VITEEEVDVEVEEEEERQMGQENWFLVIKEEEEEEEAE-EETGLLSAEELNKKCDDFIKK 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K349_CUCSA2.0e-3464.71Uncharacterized protein OS=Cucumis sativus GN=Csa_7G032240 PE=4 SV=1[more]
A5BT69_VITVI6.3e-1240.21Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044034 PE=4 SV=1[more]
A0A0D2QYQ2_GOSRA1.2e-1033.65Uncharacterized protein OS=Gossypium raimondii GN=B456_009G449600 PE=4 SV=1[more]
A0A067L5D4_JATCU5.9e-1035.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01046 PE=4 SV=1[more]
A0A061DU36_THECC8.6e-0936.07Uncharacterized protein OS=Theobroma cacao GN=TCM_002397 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659124282|ref|XP_008462077.1|1.5e-3564.41PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member B-like [C... [more]
gi|778723509|ref|XP_011658666.1|2.9e-3464.71PREDICTED: uncharacterized protein LOC105436067 [Cucumis sativus][more]
gi|645247608|ref|XP_008229915.1|6.3e-1339.90PREDICTED: uncharacterized protein LOC103329252 [Prunus mume][more]
gi|694432198|ref|XP_009343464.1|5.3e-1238.95PREDICTED: uncharacterized protein LOC103935423 [Pyrus x bretschneideri][more]
gi|147860680|emb|CAN79287.1|9.1e-1240.21hypothetical protein VITISV_044034 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G008560.1CmaCh19G008560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 102..142
scor
NoneNo IPR availablePANTHERPTHR34947FAMILY NOT NAMEDcoord: 1..169
score: 4.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh19G008560CmaCh11G012900Cucurbita maxima (Rimu)cmacmaB151