CmaCh19G003190 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G003190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPolygalacturonase family protein
LocationCma_Chr19 : 2861842 .. 2862269 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAAGTCCTATTATCATCGACCAAAATTACTGCCCCAACAACAACAAAGGTTGTCCGGGACAGGTCTGTATCGAAATCTTATTTCATTCACTTACGAATAGGTTTCTGGAGTCGAAATTAGCAATGTGAGTTATCAAAACATCCATGGAACATCAGCCACTCAAGTTGCGTTGAAATTTGATTGTAGCTCGAAGTTTCCATGCAGGGGGATAACGCTCGAGGATGTGAAGCAGAGTTACAAGAATGACGCGGCTGAAGCTTCTTGTAGCAATGCTGATGGAACTGCTGCTGGCTTAGTTCAGCCATCAAGTTGTTTGTAGGGAAATCAGAGAACTATATAATATTTTATGATATCGATACAAGTTCGAAGGTTGAGGTTGTGGTCTTAGCAACCCACTATGGGCAGTCGTGTCAAGAGTCAAC

mRNA sequence

ATGTCCAAAGTCCTATTATCATCGACCAAAATTACTGCCCCAACAACAACAAAGGTTGTCCGGGACAGCTCGAAGTTTCCATGCAGGGGGATAACGCTCGAGGATGTGAAGCAGAGTTACAAGAATGACGCGGCTGAAGCTTCTTGTAGCAATGCTGATGGAACTGCTGCTGGCTTAGTTCAGCCATCAAGTTGTTTGTAGGGAAATCAGAGAACTATATAATATTTTATGATATCGATACAAGTTCGAAGGTTGAGGTTGTGGTCTTAGCAACCCACTATGGGCAGTCGTGTCAAGAGTCAAC

Coding sequence (CDS)

ATGTCCAAAGTCCTATTATCATCGACCAAAATTACTGCCCCAACAACAACAAAGGTTGTCCGGGACAGCTCGAAGTTTCCATGCAGGGGGATAACGCTCGAGGATGTGAAGCAGAGTTACAAGAATGACGCGGCTGAAGCTTCTTGTAGCAATGCTGATGGAACTGCTGCTGGCTTAGTTCAGCCATCAAGTTGTTTGTAG

Protein sequence

MSKVLLSSTKITAPTTTKVVRDSSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL
BLAST of CmaCh19G003190 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-10
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1

Query: 12  TAPTTTKVVRDSS-KFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           T+ T   V  D S K PCR I LEDVK +YKN AAE+SCS+ADGT  G+VQP+SCL
Sbjct: 338 TSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393

BLAST of CmaCh19G003190 vs. TrEMBL
Match: A0A0A0M095_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627460 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-10
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1

Query: 23  SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           SSKFPC  ITLEDVK S KN+AAEASCS+A+G+AAGLVQPSSCL
Sbjct: 343 SSKFPCSDITLEDVKLSCKNEAAEASCSHAEGSAAGLVQPSSCL 386

BLAST of CmaCh19G003190 vs. TrEMBL
Match: A0A0D2S5S2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G186600 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-09
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 12  TAPTTTKVVRD-SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           T+ T   V  D SS++PC  I LEDVK +Y+N AAEASCSNADGTA+G VQPSSCL
Sbjct: 338 TSATEVAVKFDCSSEYPCSNIKLEDVKLTYRNKAAEASCSNADGTASGFVQPSSCL 393

BLAST of CmaCh19G003190 vs. TrEMBL
Match: U5FL48_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s002102g PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-09
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1

Query: 23 SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
          S K+PC GI LEDVK +YKN  AEASCSNA G A+GLVQP+SCL
Sbjct: 29 SKKYPCTGIKLEDVKLTYKNQPAEASCSNAGGVASGLVQPTSCL 72

BLAST of CmaCh19G003190 vs. TrEMBL
Match: U5FKL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03850g PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-09
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1

Query: 23  SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           S K+PC GI LEDVK +YKN  AEASCSNA G A+GLVQP+SCL
Sbjct: 354 SKKYPCTGIKLEDVKLTYKNQPAEASCSNAGGVASGLVQPTSCL 397

BLAST of CmaCh19G003190 vs. TrEMBL
Match: U5FJR0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03880g PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-09
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1

Query: 23  SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           S K+PC GI LEDVK +YKN  AEASCSNA G A+GLVQP+SCL
Sbjct: 353 SKKYPCTGIKLEDVKLTYKNQPAEASCSNAGGVASGLVQPTSCL 396

BLAST of CmaCh19G003190 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-06
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1

Query: 1   MSKVLLSSTKITAPTTTKVVRD-SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGL 60
           +S V+      T+ T   V  D SSK PC GI ++DVK +Y+N  A   CS+A G+ AG 
Sbjct: 322 ISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKLTYRNKPATTDCSHAGGSEAGF 381

Query: 61  VQPSSCL 67
            +P+SCL
Sbjct: 382 QRPNSCL 388

BLAST of CmaCh19G003190 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.0e-06
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1

Query: 1   MSKVLLSSTKITAPTTTKVVRD-SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGL 60
           +S VL      T+ T   V  D SSK PC GI LEDVK +Y+N  A ++C++A G  AG 
Sbjct: 319 ISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRLEDVKLTYQNKPAASACTHAGGIEAGF 378

Query: 61  VQPSSCL 67
            QP +CL
Sbjct: 379 FQP-NCL 384

BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|659099184|ref|XP_008450474.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1

Query: 23  SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           SSKFPC  ITLEDV+ SYKN+AAEASCS+A+G+AAGLVQPSSCL
Sbjct: 262 SSKFPCNDITLEDVELSYKNEAAEASCSHAEGSAAGLVQPSSCL 305

BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|449442581|ref|XP_004139060.1| (PREDICTED: polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-10
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1

Query: 23  SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           SSKFPC  ITLEDVK S KN+AAEASCS+A+G+AAGLVQPSSCL
Sbjct: 343 SSKFPCSDITLEDVKLSCKNEAAEASCSHAEGSAAGLVQPSSCL 386

BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|823175950|ref|XP_012486284.1| (PREDICTED: polygalacturonase-like [Gossypium raimondii])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 12  TAPTTTKVVRD-SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           T+ T   V  D SS++PC  I LEDVK +Y+N AAEASCSNADGTA+G VQPSSCL
Sbjct: 338 TSATEVAVKFDCSSEYPCSNIKLEDVKLTYRNKAAEASCSNADGTASGFVQPSSCL 393

BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|470138195|ref|XP_004304844.1| (PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 12  TAPTTTKVVRD-SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           T+ T   V  D SSKFPC  ITL+DVK SYKN+AAEASCS+A GTA G VQP+SCL
Sbjct: 339 TSATEVAVKFDCSSKFPCSKITLDDVKLSYKNEAAEASCSHAGGTALGTVQPTSCL 394

BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|566211201|ref|XP_006372674.1| (Polygalacturonase precursor family protein [Populus trichocarpa])

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-09
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1

Query: 23  SSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL 67
           S K+PC GI LEDVK +YKN  AEASCSNA G A+GLVQP+SCL
Sbjct: 353 SKKYPCTGIKLEDVKLTYKNQPAEASCSNAGGVASGLVQPTSCL 396

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PGLR_PRUPE5.7e-1062.50Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0M095_CUCSA2.3e-1081.82Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627460 PE=3 SV=1[more]
A0A0D2S5S2_GOSRA2.0e-0966.07Uncharacterized protein OS=Gossypium raimondii GN=B456_006G186600 PE=3 SV=1[more]
U5FL48_POPTR5.7e-0972.73Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s002102g ... [more]
U5FKL6_POPTR5.7e-0972.73Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03850g PE=3 SV=1[more]
U5FJR0_POPTR5.7e-0972.73Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03880g PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G59850.11.4e-0643.28 Pectin lyase-like superfamily protein[more]
AT2G43870.19.0e-0646.27 Pectin lyase-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659099184|ref|XP_008450474.1|6.7e-1181.82PREDICTED: polygalacturonase-like [Cucumis melo][more]
gi|449442581|ref|XP_004139060.1|3.3e-1081.82PREDICTED: polygalacturonase-like [Cucumis sativus][more]
gi|823175950|ref|XP_012486284.1|2.8e-0966.07PREDICTED: polygalacturonase-like [Gossypium raimondii][more]
gi|470138195|ref|XP_004304844.1|3.7e-0967.86PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca][more]
gi|566211201|ref|XP_006372674.1|8.2e-0972.73Polygalacturonase precursor family protein [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G003190.1CmaCh19G003190.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 23..66
score: 3.0
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 21..65
score: 2.
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 23..66
score: 9.5
NoneNo IPR availablePANTHERPTHR31375:SF2POLYGALACTURONASE/PECTINASEcoord: 23..66
score: 9.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G003190CmoCh19G003620Cucurbita moschata (Rifu)cmacmoB509
CmaCh19G003190Lsi03G009070Bottle gourd (USVL1VR-Ls)cmalsiB482
CmaCh19G003190Cla97C09G176990Watermelon (97103) v2cmawmbB560
CmaCh19G003190Bhi05G000551Wax gourdcmawgoB0655
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G003190Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G003190Cucurbita moschata (Rifu)cmacmoB511
CmaCh19G003190Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G003190Watermelon (97103) v2cmawmbB551