CmaCh19G003190 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCAAAGTCCTATTATCATCGACCAAAATTACTGCCCCAACAACAACAAAGGTTGTCCGGGACAGGTCTGTATCGAAATCTTATTTCATTCACTTACGAATAGGTTTCTGGAGTCGAAATTAGCAATGTGAGTTATCAAAACATCCATGGAACATCAGCCACTCAAGTTGCGTTGAAATTTGATTGTAGCTCGAAGTTTCCATGCAGGGGGATAACGCTCGAGGATGTGAAGCAGAGTTACAAGAATGACGCGGCTGAAGCTTCTTGTAGCAATGCTGATGGAACTGCTGCTGGCTTAGTTCAGCCATCAAGTTGTTTGTAGGGAAATCAGAGAACTATATAATATTTTATGATATCGATACAAGTTCGAAGGTTGAGGTTGTGGTCTTAGCAACCCACTATGGGCAGTCGTGTCAAGAGTCAAC ATGTCCAAAGTCCTATTATCATCGACCAAAATTACTGCCCCAACAACAACAAAGGTTGTCCGGGACAGCTCGAAGTTTCCATGCAGGGGGATAACGCTCGAGGATGTGAAGCAGAGTTACAAGAATGACGCGGCTGAAGCTTCTTGTAGCAATGCTGATGGAACTGCTGCTGGCTTAGTTCAGCCATCAAGTTGTTTGTAGGGAAATCAGAGAACTATATAATATTTTATGATATCGATACAAGTTCGAAGGTTGAGGTTGTGGTCTTAGCAACCCACTATGGGCAGTCGTGTCAAGAGTCAAC ATGTCCAAAGTCCTATTATCATCGACCAAAATTACTGCCCCAACAACAACAAAGGTTGTCCGGGACAGCTCGAAGTTTCCATGCAGGGGGATAACGCTCGAGGATGTGAAGCAGAGTTACAAGAATGACGCGGCTGAAGCTTCTTGTAGCAATGCTGATGGAACTGCTGCTGGCTTAGTTCAGCCATCAAGTTGTTTGTAG MSKVLLSSTKITAPTTTKVVRDSSKFPCRGITLEDVKQSYKNDAAEASCSNADGTAAGLVQPSSCL
BLAST of CmaCh19G003190 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 5.7e-10 Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
BLAST of CmaCh19G003190 vs. TrEMBL
Match: A0A0A0M095_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G627460 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.3e-10 Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
BLAST of CmaCh19G003190 vs. TrEMBL
Match: A0A0D2S5S2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G186600 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 2.0e-09 Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1
BLAST of CmaCh19G003190 vs. TrEMBL
Match: U5FL48_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s002102g PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 5.7e-09 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
BLAST of CmaCh19G003190 vs. TrEMBL
Match: U5FKL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03850g PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 5.7e-09 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
BLAST of CmaCh19G003190 vs. TrEMBL
Match: U5FJR0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03880g PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 5.7e-09 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
BLAST of CmaCh19G003190 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein) HSP 1 Score: 48.9 bits (115), Expect = 1.4e-06 Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1
BLAST of CmaCh19G003190 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein) HSP 1 Score: 46.2 bits (108), Expect = 9.0e-06 Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|659099184|ref|XP_008450474.1| (PREDICTED: polygalacturonase-like [Cucumis melo]) HSP 1 Score: 74.7 bits (182), Expect = 6.7e-11 Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1
BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|449442581|ref|XP_004139060.1| (PREDICTED: polygalacturonase-like [Cucumis sativus]) HSP 1 Score: 72.4 bits (176), Expect = 3.3e-10 Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|823175950|ref|XP_012486284.1| (PREDICTED: polygalacturonase-like [Gossypium raimondii]) HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09 Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1
BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|470138195|ref|XP_004304844.1| (PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09 Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1
BLAST of CmaCh19G003190 vs. NCBI nr
Match: gi|566211201|ref|XP_006372674.1| (Polygalacturonase precursor family protein [Populus trichocarpa]) HSP 1 Score: 67.8 bits (164), Expect = 8.2e-09 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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