CmaCh18G012740 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G012740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr18 : 9883411 .. 9884038 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCTACTTGCTCTTTTGCTCCACCACCTGCAAACTCTAGCCTCCATGGACGGCACTACCTTGACTCTTCACAGAACCTCGCGTCTCTGGTTTAGCTGTAAAATATTAGATAGCCGTGGTAGCAGCGTCATGCTTATGGTGCGTGCGGGTGCTTTGGAACCCCATTAGATCCGGTGTGAAGAAAGTGACTATTTGGAACAGAACGGAGGAAGGGGCAAAAAATGCAGGGCTGGACAGGGTCTACCTGAAGAGTTGTGGAACTCTGGATCATGCAATTGTGTGTGCAACCAACTCAGAGGTTCCTCTGATGAAAGGTATTTTATCCCATGTTATAATTTTTAGTGTATTCGCTTCTGTCGCCTATGGACTTGTATGTCTCTAACTTCGGATTAGTAAGTTCGCATGAAGTCGAATTTGGAGCTTCTTGTTCGAATCTGATGGGATTGATTAACGGGGAGGTGGTGGGAAGAAGGAATAGGTAGGAAACAACTGCGTTCAGATCTGTTGTTGGCTCTGCAATGGCGGACCTTGTTGCGAGAGAAGCATCTGAGAGTTTTTCAAGCTTCCTTTGATTAACAGGTGATTCCTCTTTACTACTGTTTTCTCGCTTGGTCTTCTGTTTAA

mRNA sequence

ATGCAAGCTACTTGCTCTTTTGCTCCACCACCTGCAAACTCTAGCCTCCATGGACGGCACTACCTTGACTCTTCACAGAACCTCGCGTCTCTGATAGCCGTGGTAGCAGCGTCATGCTTATGGTGCGTGCGGGTGCTTTGGAACCCCATTAGATCCGGTGTGAAGAAAGTGACTATTTGGAACAGAACGGAGGAAGGGGCAAAAAATGCAGGGCTGGACAGGGTCTACCTGAAGAGTTGTGGAACTCTGGATCATGCAATTGTGTGTGCAACCAACTCAGAGGTTCCTCTGATGAAAGTGTATTCGCTTCTGTCGCCTATGGACTTGTATGTCTCTAACTTCGGATTAGTGATTCCTCTTTACTACTGTTTTCTCGCTTGGTCTTCTGTTTAA

Coding sequence (CDS)

ATGCAAGCTACTTGCTCTTTTGCTCCACCACCTGCAAACTCTAGCCTCCATGGACGGCACTACCTTGACTCTTCACAGAACCTCGCGTCTCTGATAGCCGTGGTAGCAGCGTCATGCTTATGGTGCGTGCGGGTGCTTTGGAACCCCATTAGATCCGGTGTGAAGAAAGTGACTATTTGGAACAGAACGGAGGAAGGGGCAAAAAATGCAGGGCTGGACAGGGTCTACCTGAAGAGTTGTGGAACTCTGGATCATGCAATTGTGTGTGCAACCAACTCAGAGGTTCCTCTGATGAAAGTGTATTCGCTTCTGTCGCCTATGGACTTGTATGTCTCTAACTTCGGATTAGTGATTCCTCTTTACTACTGTTTTCTCGCTTGGTCTTCTGTTTAA

Protein sequence

MQATCSFAPPPANSSLHGRHYLDSSQNLASLIAVVAASCLWCVRVLWNPIRSGVKKVTIWNRTEEGAKNAGLDRVYLKSCGTLDHAIVCATNSEVPLMKVYSLLSPMDLYVSNFGLVIPLYYCFLAWSSV
Homology
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BLAST of CmaCh18G012740 vs. TrEMBL
Match: A0A0A0L8U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G184010 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-06
Identity = 35/64 (54.69%), Postives = 38/64 (59.38%), Query Frame = 1 

Query: 50  IRSGVKKVTIWNRTEEGAK--------NAGLDRVYLKSCGTLDHAI------VCATNSEV 100
           +R  VKKV IWNRTEE AK        NAGLD V  +S   LD AI       CATNSEV
Sbjct: 173 VRPSVKKVIIWNRTEERAKKLADEMRENAGLDGVCFESSANLDDAISVADIVSCATNSEV 232

The following BLAST results are available for this feature:
BLAST of CmaCh18G012740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh18G012740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8U0_CUCSA8.9e-0654.69Uncharacterized protein OS=Cucumis sativus GN=Csa_3G184010 PE=4 SV=1[more]
BLAST of CmaCh18G012740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh18G012740 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G012740.1CmaCh18G012740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G012740Cp4.1LG09g00640Cucurbita pepo (Zucchini)cmacpeB415
CmaCh18G012740CsaV3_3G017540Cucumber (Chinese Long) v3cmacucB0487
CmaCh18G012740Carg22135Silver-seed gourdcarcmaB1032
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G012740Cucumber (Chinese Long) v3cmacucB0490
CmaCh18G012740Cucumber (Chinese Long) v3cmacucB0500
CmaCh18G012740Cucumber (Chinese Long) v3cmacucB0504
CmaCh18G012740Watermelon (97103) v2cmawmbB400
CmaCh18G012740Watermelon (97103) v2cmawmbB424
CmaCh18G012740Watermelon (97103) v2cmawmbB429
CmaCh18G012740Wax gourdcmawgoB0505
CmaCh18G012740Cucurbita maxima (Rimu)cmacmaB253
CmaCh18G012740Cucurbita maxima (Rimu)cmacmaB306
CmaCh18G012740Cucurbita maxima (Rimu)cmacmaB338
CmaCh18G012740Cucurbita maxima (Rimu)cmacmaB396
CmaCh18G012740Cucumber (Gy14) v1cgycmaB0249
CmaCh18G012740Melon (DHL92) v3.5.1cmameB379
CmaCh18G012740Cucurbita moschata (Rifu)cmacmoB403
CmaCh18G012740Cucurbita moschata (Rifu)cmacmoB405
CmaCh18G012740Cucurbita moschata (Rifu)cmacmoB406
CmaCh18G012740Cucurbita moschata (Rifu)cmacmoB416
CmaCh18G012740Wild cucumber (PI 183967)cmacpiB413
CmaCh18G012740Cucumber (Chinese Long) v2cmacuB408
CmaCh18G012740Melon (DHL92) v3.5.1cmameB375
CmaCh18G012740Watermelon (Charleston Gray)cmawcgB347
CmaCh18G012740Watermelon (Charleston Gray)cmawcgB365
CmaCh18G012740Watermelon (97103) v1cmawmB373
CmaCh18G012740Cucurbita pepo (Zucchini)cmacpeB423
CmaCh18G012740Cucurbita pepo (Zucchini)cmacpeB425
CmaCh18G012740Cucurbita pepo (Zucchini)cmacpeB453
CmaCh18G012740Bottle gourd (USVL1VR-Ls)cmalsiB363
CmaCh18G012740Bottle gourd (USVL1VR-Ls)cmalsiB386
CmaCh18G012740Bottle gourd (USVL1VR-Ls)cmalsiB387
CmaCh18G012740Cucumber (Gy14) v2cgybcmaB355
CmaCh18G012740Cucumber (Gy14) v2cgybcmaB352
CmaCh18G012740Cucumber (Gy14) v2cgybcmaB628
CmaCh18G012740Melon (DHL92) v3.6.1cmamedB403
CmaCh18G012740Melon (DHL92) v3.6.1cmamedB432
CmaCh18G012740Melon (DHL92) v3.6.1cmamedB435
CmaCh18G012740Melon (DHL92) v3.6.1cmamedB436
CmaCh18G012740Silver-seed gourdcarcmaB0996
CmaCh18G012740Silver-seed gourdcarcmaB1368