Carg22135 (gene) Silver-seed gourd

Overview
NameCarg22135
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiondelta(1)-pyrroline-2-carboxylate reductase
LocationCucurbita_argyrosperma_scaffold_229 : 240276 .. 240761 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCTACTTGCACTTTTGCTCCACCACCTGCAAACTCTAGCCTCCATGGACGGCACTACCTTGACTCTTTACAGAACCTCGCGTCTCTGGTTTAGCTGCAAAATATTAGATAGCCCTGGTAGCAGCGTCATGCTTATGGTGCGTGTGGGTGCTTTGGGACCCCATTAGATCCGGTGTGAAGAAAGTGACTATTTGGAACAGAACGGAGGAAAGGGCAAAAAATGCAGGGCTGGACGGGGTCTTCTTGAAGAGTTGTGGAACTCCGGATCGTGCAATTGTGTGTGCAACCAACTCAGAGCTTCCTCTGATGAAAGGTATTTTATCCCATATTATAATTTTTAGTGTATTCGCTTCTGTCGCCTGTGGACTTGTATGTCTCTAACTTCGGATTAGTAAGATCGCATGAAGTCGAATTTGGAGCTTCTTGTTCGAATCTGATGGGATTGATTAACGGGGGGGTTGTGAGAAGAAGGAATAGGTAG

mRNA sequence

ATGCAAGCTACTTGCACTTTTGCTCCACCACCTGCAAACTCTAGCCTCCATGGACGGCACTACCTTGACTCTTTACAGAACCTCGCGTCTCTGATAGCCCTGGTAGCAGCGTCATGCTTATGGTGCGTGTGGGTGCTTTGGGACCCCATTAGATCCGGTGTGAAGAAAGTGACTATTTGGAACAGAACGGAGGAAAGGGCAAAAAATGCAGGGCTGGACGGGGTCTTCTTGAAGAGTTGTGGAACTCCGGATCGTGCAATTGTGTGTGCAACCAACTCAGAGCTTCCTCTGATGAAAGTGTATTCGCTTCTGTCGCCTGTGGACTTGTATGTCTCTAACTTCGGATTAGTAAGATCGCATGAAGTCGAATTTGGAGCTTCTTGTTCGAATCTGATGGGATTGATTAACGGGGGGGTTGTGAGAAGAAGGAATAGGTAG

Coding sequence (CDS)

ATGCAAGCTACTTGCACTTTTGCTCCACCACCTGCAAACTCTAGCCTCCATGGACGGCACTACCTTGACTCTTTACAGAACCTCGCGTCTCTGATAGCCCTGGTAGCAGCGTCATGCTTATGGTGCGTGTGGGTGCTTTGGGACCCCATTAGATCCGGTGTGAAGAAAGTGACTATTTGGAACAGAACGGAGGAAAGGGCAAAAAATGCAGGGCTGGACGGGGTCTTCTTGAAGAGTTGTGGAACTCCGGATCGTGCAATTGTGTGTGCAACCAACTCAGAGCTTCCTCTGATGAAAGTGTATTCGCTTCTGTCGCCTGTGGACTTGTATGTCTCTAACTTCGGATTAGTAAGATCGCATGAAGTCGAATTTGGAGCTTCTTGTTCGAATCTGATGGGATTGATTAACGGGGGGGTTGTGAGAAGAAGGAATAGGTAG

Protein sequence

MQATCTFAPPPANSSLHGRHYLDSLQNLASLIALVAASCLWCVWVLWDPIRSGVKKVTIWNRTEERAKNAGLDGVFLKSCGTPDRAIVCATNSELPLMKVYSLLSPVDLYVSNFGLVRSHEVEFGASCSNLMGLINGGVVRRRNR
Homology
[Close]
BLAST of Carg22135 vs. NCBI nr
Match: XP_004140751.1 (PREDICTED: uncharacterized protein P11E10.01 [Cucumis sativus] >KGN57419.1 hypothetical protein Csa_3G184010 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 9.5e-06
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 50  IRSGVKKVTIWNRTEERAK--------NAGLDGVFLKSCGTPDRAI------VCATNSEL 100
           +R  VKKV IWNRTEERAK        NAGLDGV  +S    D AI       CATNSE+
Sbjct: 173 VRPSVKKVIIWNRTEERAKKLADEMRENAGLDGVCFESSANLDDAISVADIVSCATNSEV 232

[Close]
BLAST of Carg22135 vs. NCBI nr
Match: XP_008439304.1 (PREDICTED: delta(1)-pyrroline-2-carboxylate reductase [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 9.5e-06
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 50  IRSGVKKVTIWNRTEERAK--------NAGLDGVFLKSCGTPDRAI------VCATNSEL 100
           +R  VKKV IWNRTEERAK        NAGLDGV  +S    D AI       CATNSE+
Sbjct: 238 VRPSVKKVIIWNRTEERAKRLADEMRENAGLDGVCFESSANLDDAISVADIVSCATNSEV 297

[Close]
BLAST of Carg22135 vs. NCBI nr
Match: XP_022922838.1 (protein SAR DEFICIENT 4 [Cucurbita moschata] >XP_022922839.1 protein SAR DEFICIENT 4 [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0 

Query: 50  IRSGVKKVTIWNRTEERA--------KNAGLDGVFLKSCGTPDRAI------VCATNSEL 100
           +R  V+KV IWNRTEERA        KNAG+DG+  +S G  D AI       CATNSE+
Sbjct: 171 VRPSVRKVIIWNRTEERAKVLADEMRKNAGMDGLCFESTGNLDDAISVADIVSCATNSEV 230

[Close]
BLAST of Carg22135 vs. NCBI nr
Match: XP_022141221.1 (uncharacterized protein LOC111011673 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 51  RSGVKKVTIWNRTEERA--------KNAGLDGVFLKSCGTPDRAIV------CATNSELP 100
           R  VKKV IWNRTEE+A        KNAGL+GV  +S G  + AI       CATNSE+P
Sbjct: 173 RPSVKKVIIWNRTEEKAKKLAEEMQKNAGLEGVCFESSGNLEDAIAVADIVCCATNSEIP 232

[Close]
BLAST of Carg22135 vs. NCBI nr
Match: XP_023552312.1 (protein SAR DEFICIENT 4-like [Cucurbita pepo subsp. pepo] >XP_023552313.1 protein SAR DEFICIENT 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 51  RSGVKKVTIWNRTEERA--------KNAGLDGVFLKSCGTPDRAI------VCATNSELP 100
           R  V+KV IWNRTEERA        KNAG+DG+  +S G  D AI       CATNSE+P
Sbjct: 172 RPSVRKVIIWNRTEERAKVLADEMRKNAGMDGLCFESTGNLDDAISVADIVSCATNSEVP 231

[Close]
BLAST of Carg22135 vs. TrEMBL
Match: tr|A0A1S3AZ51|A0A1S3AZ51_CUCME (delta(1)-pyrroline-2-carboxylate reductase OS=Cucumis melo OX=3656 GN=LOC103484130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.3e-06
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 50  IRSGVKKVTIWNRTEERAK--------NAGLDGVFLKSCGTPDRAI------VCATNSEL 100
           +R  VKKV IWNRTEERAK        NAGLDGV  +S    D AI       CATNSE+
Sbjct: 238 VRPSVKKVIIWNRTEERAKRLADEMRENAGLDGVCFESSANLDDAISVADIVSCATNSEV 297

[Close]
BLAST of Carg22135 vs. TrEMBL
Match: tr|A0A0A0L8U0|A0A0A0L8U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184010 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.3e-06
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 50  IRSGVKKVTIWNRTEERAK--------NAGLDGVFLKSCGTPDRAI------VCATNSEL 100
           +R  VKKV IWNRTEERAK        NAGLDGV  +S    D AI       CATNSE+
Sbjct: 173 VRPSVKKVIIWNRTEERAKKLADEMRENAGLDGVCFESSANLDDAISVADIVSCATNSEV 232

The following BLAST results are available for this feature:
BLAST of Carg22135 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140751.19.5e-0654.69PREDICTED: uncharacterized protein P11E10.01 [Cucumis sativus] >KGN57419.1 hypot... [more]
XP_008439304.19.5e-0654.69PREDICTED: delta(1)-pyrroline-2-carboxylate reductase [Cucumis melo][more]
XP_022922838.11.6e-0551.56protein SAR DEFICIENT 4 [Cucurbita moschata] >XP_022922839.1 protein SAR DEFICIE... [more]
XP_022141221.13.6e-0552.38uncharacterized protein LOC111011673 [Momordica charantia][more]
XP_023552312.13.6e-0552.38protein SAR DEFICIENT 4-like [Cucurbita pepo subsp. pepo] >XP_023552313.1 protei... [more]
BLAST of Carg22135 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg22135 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22135 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZ51|A0A1S3AZ51_CUCME6.3e-0654.69delta(1)-pyrroline-2-carboxylate reductase OS=Cucumis melo OX=3656 GN=LOC1034841... [more]
tr|A0A0A0L8U0|A0A0A0L8U0_CUCSA6.3e-0654.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184010 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22135-RACarg22135-RAmRNA