CmaCh18G012190 (gene) Cucurbita maxima (Rimu)

NameCmaCh18G012190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTraB family protein
LocationCma_Chr18 : 9620407 .. 9620841 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTTAAAGCTCCCTTCTTTTTCTTATCTTCTTCATCCATGGAGGCTCTCAAATCCACGGCTATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTATCAAACCCACCAAGGTTTCCATTAGGCCGCCTCCATCGGACTTCGATTTCCGAGTTGAACTTTCTCGGGATTCCAGAGCCGCCATTGCTGAAGCTCACCCCGAGTTGCTTGATTTGGTTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTCGGCCCTGTCCCTGCTTGGAGAGCCGAATTTGTGGAGCCGGAAGCGATATGGTTGGTCGCAACTTCGCATATTTCGCCCAAATCGGTTAAGGATGTCGAGCGAGTGGTTCGAGCAGTGAAGCCCGATAATGTGGTCGTCGAACTTTGCCGGAGCAGGCAAGTTTGA

mRNA sequence

ATGGCCGTTAAAGCTCCCTTCTTTTTCTTATCTTCTTCATCCATGGAGGCTCTCAAATCCACGGCTATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTATCAAACCCACCAAGGTTTCCATTAGGCCGCCTCCATCGGACTTCGATTTCCGAGTTGAACTTTCTCGGGATTCCAGAGCCGCCATTGCTGAAGCTCACCCCGAGTTGCTTGATTTGGTTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTCGGCCCTGTCCCTGCTTGGAGAGCCGAATTTGTGGAGCCGGAAGCGATATGGTTGGTCGCAACTTCGCATATTTCGCCCAAATCGGTTAAGGATGTCGAGCGAGTGGTTCGAGCAGTGAAGCCCGATAATGTGGTCGTCGAACTTTGCCGGAGCAGGCAAGTTTGA

Coding sequence (CDS)

ATGGCCGTTAAAGCTCCCTTCTTTTTCTTATCTTCTTCATCCATGGAGGCTCTCAAATCCACGGCTATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTATCAAACCCACCAAGGTTTCCATTAGGCCGCCTCCATCGGACTTCGATTTCCGAGTTGAACTTTCTCGGGATTCCAGAGCCGCCATTGCTGAAGCTCACCCCGAGTTGCTTGATTTGGTTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTCGGCCCTGTCCCTGCTTGGAGAGCCGAATTTGTGGAGCCGGAAGCGATATGGTTGGTCGCAACTTCGCATATTTCGCCCAAATCGGTTAAGGATGTCGAGCGAGTGGTTCGAGCAGTGAAGCCCGATAATGTGGTCGTCGAACTTTGCCGGAGCAGGCAAGTTTGA

Protein sequence

MAVKAPFFFLSSSSMEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNVVVELCRSRQV
BLAST of CmaCh18G012190 vs. TrEMBL
Match: A0A0A0L8K8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180270 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-55
Identity = 110/130 (84.62%), Postives = 118/130 (90.77%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           MEALKSTAIPIF+  P+S PTKS+KP  VSI PPPSDFDFR+E+SRDSRA IAE HPELL
Sbjct: 1   MEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDFDFRLEISRDSRATIAETHPELL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           DL DDG LVLV+K +FGPVPAWRAEFVEP+AIWLV TSHISPKSVKDVERVVRAVKPDNV
Sbjct: 61  DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTSHISPKSVKDVERVVRAVKPDNV 120

Query: 135 VVELCRSRQV 145
           VVELCRSRQV
Sbjct: 121 VVELCRSRQV 130

BLAST of CmaCh18G012190 vs. TrEMBL
Match: V4RLJ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005112mg PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.9e-43
Identity = 89/133 (66.92%), Postives = 105/133 (78.95%), Query Frame = 1

Query: 10  LSSSSMEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEA 69
           L  +SMEA +    PIF   P  + TK IKP KVSI+PPP DFDFR E+  DS+A IA+A
Sbjct: 16  LRLTSMEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKA 75

Query: 70  HPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAV 129
            PELL+L DDGTLVL++KR+FGPVPAWR+EFVEPE IWL+ T+H+S  S  DVERVVRA+
Sbjct: 76  CPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAI 135

Query: 130 KPDNVVVELCRSR 143
           KPDNVVVELCRSR
Sbjct: 136 KPDNVVVELCRSR 148

BLAST of CmaCh18G012190 vs. TrEMBL
Match: A0A067EYC3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017036mg PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-42
Identity = 87/128 (67.97%), Postives = 102/128 (79.69%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           MEA +    PIF   P  + TK IKP KVSI+PPP DFDFR E+  DS+A IA+A PELL
Sbjct: 1   MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           +L DDGTLVL++KR+FGPVPAWR+EFVEPE IWL+ T+H+S  S  DVERVVRA+KPDNV
Sbjct: 61  NLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNV 120

Query: 135 VVELCRSR 143
           VVELCRSR
Sbjct: 121 VVELCRSR 128

BLAST of CmaCh18G012190 vs. TrEMBL
Match: A0A067FA70_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017036mg PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-42
Identity = 87/128 (67.97%), Postives = 102/128 (79.69%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           MEA +    PIF   P  + TK IKP KVSI+PPP DFDFR E+  DS+A IA+A PELL
Sbjct: 1   MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           +L DDGTLVL++KR+FGPVPAWR+EFVEPE IWL+ T+H+S  S  DVERVVRA+KPDNV
Sbjct: 61  NLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNV 120

Query: 135 VVELCRSR 143
           VVELCRSR
Sbjct: 121 VVELCRSR 128

BLAST of CmaCh18G012190 vs. TrEMBL
Match: B9R9G9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497430 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-42
Identity = 88/130 (67.69%), Postives = 101/130 (77.69%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           M+ L ++  PIF  YP    +K  KP KVSI+PPP DFDFR E+ ++SR  IA+ HP+LL
Sbjct: 1   MDTLLNSTFPIFSKYPNFPISKPAKPLKVSIKPPPPDFDFRSEILQESRTTIAKNHPDLL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           DL D G L+L+EKR FGPVPAWR EFVEPEAIWLV TSHIS +S   VERVVRAVKPDNV
Sbjct: 61  DLADSGNLILIEKRLFGPVPAWRTEFVEPEAIWLVGTSHISTESATQVERVVRAVKPDNV 120

Query: 135 VVELCRSRQV 145
           VVELCRSRQV
Sbjct: 121 VVELCRSRQV 130

BLAST of CmaCh18G012190 vs. TAIR10
Match: AT5G52030.2 (AT5G52030.2 TraB family protein)

HSP 1 Score: 160.6 bits (405), Expect = 7.1e-40
Identity = 80/124 (64.52%), Postives = 96/124 (77.42%), Query Frame = 1

Query: 21  TAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELLDLVDDG 80
           T  P F PY      + IK   VS++ PP DFDFR +++ +SRAAIA+ +PELLDL D+G
Sbjct: 10  TLFPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNG 69

Query: 81  TLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNVVVELCR 140
           TL+L++K+ FGPVPAWR EFVEPEAIWLV TSHISP+S   VERVVR VKPDNV VELCR
Sbjct: 70  TLILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCR 129

Query: 141 SRQV 145
           SR+V
Sbjct: 130 SRKV 132

BLAST of CmaCh18G012190 vs. NCBI nr
Match: gi|449446067|ref|XP_004140793.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 6.1e-57
Identity = 119/150 (79.33%), Postives = 127/150 (84.67%), Query Frame = 1

Query: 1   MAVKAPFFFLSSSS--------MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDF 60
           MAVK   FFLSSSS        MEALKSTAIPIF+  P+S PTKS+KP  VSI PPPSDF
Sbjct: 1   MAVKGRSFFLSSSSPSISLLSSMEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDF 60

Query: 61  DFRVELSRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATS 120
           DFR+E+SRDSRA IAE HPELLDL DDG LVLV+K +FGPVPAWRAEFVEP+AIWLV TS
Sbjct: 61  DFRLEISRDSRATIAETHPELLDLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTS 120

Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 143
           HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 150

BLAST of CmaCh18G012190 vs. NCBI nr
Match: gi|700202206|gb|KGN57339.1| (hypothetical protein Csa_3G180270 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-55
Identity = 110/130 (84.62%), Postives = 118/130 (90.77%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           MEALKSTAIPIF+  P+S PTKS+KP  VSI PPPSDFDFR+E+SRDSRA IAE HPELL
Sbjct: 1   MEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDFDFRLEISRDSRATIAETHPELL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           DL DDG LVLV+K +FGPVPAWRAEFVEP+AIWLV TSHISPKSVKDVERVVRAVKPDNV
Sbjct: 61  DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTSHISPKSVKDVERVVRAVKPDNV 120

Query: 135 VVELCRSRQV 145
           VVELCRSRQV
Sbjct: 121 VVELCRSRQV 130

BLAST of CmaCh18G012190 vs. NCBI nr
Match: gi|659077362|ref|XP_008439166.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.8e-51
Identity = 104/128 (81.25%), Postives = 111/128 (86.72%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           ME LK  AIPIFR YP+S  TK +KP  VSI+PPPSDFDFR E+S DSRAAIAE HPELL
Sbjct: 1   MEVLKFAAIPIFRSYPLSFATKFLKPINVSIKPPPSDFDFRSEISEDSRAAIAETHPELL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           DL DDG LVLV+K +FGPVPAWRAEFVEP+AIWLV TSHIS KSVKDVERVVRAVKPDNV
Sbjct: 61  DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTSHISSKSVKDVERVVRAVKPDNV 120

Query: 135 VVELCRSR 143
           VVELCRSR
Sbjct: 121 VVELCRSR 128

BLAST of CmaCh18G012190 vs. NCBI nr
Match: gi|657944903|ref|XP_008377060.1| (PREDICTED: traB domain-containing protein isoform X1 [Malus domestica])

HSP 1 Score: 185.7 bits (470), Expect = 5.9e-44
Identity = 90/128 (70.31%), Postives = 106/128 (82.81%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           ME ++S++ PIFR  PV +  K ++P+KVSI+PPP DFDFR E+S DSRA IA  HPELL
Sbjct: 1   METIQSSSFPIFRTNPVFLTPKPLRPSKVSIKPPPPDFDFRSEISVDSRATIARTHPELL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           DL ++G+L L+EK RFGPVPAWRAEFVEPEAIWLV T+HIS  S  +VERVVRAVKPDNV
Sbjct: 61  DLAENGSLFLIEKSRFGPVPAWRAEFVEPEAIWLVGTNHISQDSAVEVERVVRAVKPDNV 120

Query: 135 VVELCRSR 143
           VVELCRSR
Sbjct: 121 VVELCRSR 128

BLAST of CmaCh18G012190 vs. NCBI nr
Match: gi|694427253|ref|XP_009341262.1| (PREDICTED: traB domain-containing protein isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 182.6 bits (462), Expect = 5.0e-43
Identity = 88/128 (68.75%), Postives = 106/128 (82.81%), Query Frame = 1

Query: 15  MEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDFDFRVELSRDSRAAIAEAHPELL 74
           ME ++S++ PIFR  PV +  + ++P+KVSI+PPP DFDFR E+S DSRA IA  HPELL
Sbjct: 1   METIQSSSFPIFRTNPVFLTPRPLRPSKVSIKPPPPDFDFRSEISVDSRAIIARTHPELL 60

Query: 75  DLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATSHISPKSVKDVERVVRAVKPDNV 134
           DL ++G+L L+EK +FGPVPAWRAEFVEPEAIWLV T+HIS  S  +VERVVRAVKPDNV
Sbjct: 61  DLAENGSLFLIEKSQFGPVPAWRAEFVEPEAIWLVGTNHISQDSAVEVERVVRAVKPDNV 120

Query: 135 VVELCRSR 143
           VVELCRSR
Sbjct: 121 VVELCRSR 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8K8_CUCSA1.8e-5584.62Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180270 PE=4 SV=1[more]
V4RLJ8_9ROSI5.9e-4366.92Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005112mg PE=4 SV=1[more]
A0A067EYC3_CITSI2.9e-4267.97Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017036mg PE=4 SV=1[more]
A0A067FA70_CITSI2.9e-4267.97Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017036mg PE=4 SV=1[more]
B9R9G9_RICCO6.5e-4267.69Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497430 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G52030.27.1e-4064.52 TraB family protein[more]
Match NameE-valueIdentityDescription
gi|449446067|ref|XP_004140793.1|6.1e-5779.33PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus][more]
gi|700202206|gb|KGN57339.1|2.5e-5584.62hypothetical protein Csa_3G180270 [Cucumis sativus][more]
gi|659077362|ref|XP_008439166.1|3.8e-5181.25PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo][more]
gi|657944903|ref|XP_008377060.1|5.9e-4470.31PREDICTED: traB domain-containing protein isoform X1 [Malus domestica][more]
gi|694427253|ref|XP_009341262.1|5.0e-4368.75PREDICTED: traB domain-containing protein isoform X1 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002816Pheromone_shutdown_TraB
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G012190.1CmaCh18G012190.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002816Pheromone shutdown, TraBPFAMPF01963TraBcoord: 95..142
score: 1.
NoneNo IPR availablePANTHERPTHR21530PHEROMONE SHUTDOWN PROTEINcoord: 4..144
score: 4.7
NoneNo IPR availablePANTHERPTHR21530:SF1TRAB FAMILY PROTEINcoord: 4..144
score: 4.7

The following gene(s) are paralogous to this gene:

None