CmaCh18G012040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G012040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Basic helix-loop-helix DNA-binding superfamily protein, putative
Location	Cma_Chr18 : 9543067 .. 9544635 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGCTAATCTTGTTTGTGAAAGATTTTGAATGGAATCTTGGCCTTCTCAACTCCAAACCCTTTCAAAATTCTTGCAAGATATTGCCCTAACAAACGCATCTTCTTTGTTCTTCACATAATTTCAGAGTTGTCAACCAGCTATATAATGTTCCCTTTACAGAAATGCGAAGACAAGTGCTTCCAGATTTCGTTTAATCCTCACCAACACATAATCCCTGAAGATCTCATCTTTGGGCCTCAAGTTTCAGTGGAAGCTCATGATGATAGTAACAACAATAATAATGGTGTCAACAATTTGGGAACTCGTGGAAGAAGGAAGCTGCTTCAGAATTTGGATCATGGCGTTTCGGATCAAGATCATCAAATCAAGTTGATGCATAGAGAAAGGGAGAGGCAAAGAAGACAAGAAATGGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTGATTGCTATCATTTTTTTTTTTTTTTTTTGTGATTTTGTATGAACCCACTTAGATCCGGTTGTTTTATCCCAAAATTAAGCAACCCTTTTGATGAATTTTTGTTTTCATCACTAAAAATCGTAGCTTTTTGGTGTTGTTCTTGGAGCTTCTAAAAGGGATTGTTTTTTGGTGTTGATTTCAGGGGAAAAGGGCGATATCAGATCAAATGAATGGGGCGGTGAATTATATAAAGTATCAGAAGAAGAAAATCAAAGAGTTTGAAGCTAAAAGAGATGAATTGAAGAAGCTGTATAATAGTTCAAATGACTTAGAGATATCAAGAGGACAGACTCCAATTTGCAGCTTCAAAGTTAGCTCCTTTGATGGAGGGCTTGAAATCTTGATCACAACAAATGATTTCCATGGATTTCCCCTTTCAAGAATCTTGAAAGTAATTGTTGATCAAGGGTTGGAAGTTATCAGCTGTGGCTCGACCACGATGAACGACAAATCTATGCACACCATTCAAATGGAGGTAAGATGATTGCTCGTTCATTTGTTTATTCTCGAGAGTCTCGTTTGATAACAATTTTGTTTCTTTGATGTGTCTATCATTTTCTTTGCATAGTTCTTTTAGTTTTTGTAACCGTCCAAGCTTTAGGGGAAGTTTTAAAACGCATCTGTTAGAAGAGATTTTCACACCTTTATAACGGGTGTTTCGTTCCCCTCTCCAAGTAATGTGGGATCTCACAATTCACTCCTCTTAGGGGACCAGTTGACTAATGTCTGGCTCTGGTATCATTTGTAACTGCCCAAACTCACCGCTAGAAGACATGGGGCAGTTAAAGTTTTAAACTTGTTTTTGAAACAAATACGTTCAAGTACGAAAGCTTAATTCGTAAGAACAGAAGTCAAAACCAAAATGATTATCAAACTCGACTGGTATCGTTCGTTCAAATGGATTCGGCTTTACAAATTTCGAACATGCAGGTTAGTGATTCAACCTCCCTTGATCTCAGTCAGCTTGGAAAGAAGCTTACAGAAGCAGTGCCACAGCTGAAACAAGTAACAGATTAACATTATTTACTTGATGTCTATGATTAATTAGGCTTTATTCCCCCC

mRNA sequence

CCCAGCTAATCTTGTTTGTGAAAGATTTTGAATGGAATCTTGGCCTTCTCAACTCCAAACCCTTTCAAAATTCTTGCAAGATATTGCCCTAACAAACGCATCTTCTTTGTTCTTCACATAATTTCAGAGTTGTCAACCAGCTATATAATGTTCCCTTTACAGAAATGCGAAGACAAGTGCTTCCAGATTTCGTTTAATCCTCACCAACACATAATCCCTGAAGATCTCATCTTTGGGCCTCAAGTTTCAGTGGAAGCTCATGATGATAGTAACAACAATAATAATGGTGTCAACAATTTGGGAACTCGTGGAAGAAGGAAGCTGCTTCAGAATTTGGATCATGGCGTTTCGGATCAAGATCATCAAATCAAGTTGATGCATAGAGAAAGGGAGAGGCAAAGAAGACAAGAAATGGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGGGAAAAGGGCGATATCAGATCAAATGAATGGGGCGGTGAATTATATAAAGTATCAGAAGAAGAAAATCAAAGAGTTTGAAGCTAAAAGAGATGAATTGAAGAAGCTGTATAATAGTTCAAATGACTTAGAGATATCAAGAGGACAGACTCCAATTTGCAGCTTCAAAGTTAGCTCCTTTGATGGAGGGCTTGAAATCTTGATCACAACAAATGATTTCCATGGATTTCCCCTTTCAAGAATCTTGAAAGTAATTGTTGATCAAGGGTTGGAAGTTATCAGCTGTGGCTCGACCACGATGAACGACAAATCTATGCACACCATTCAAATGGAGGTTAGTGATTCAACCTCCCTTGATCTCAGTCAGCTTGGAAAGAAGCTTACAGAAGCAGTGCCACAGCTGAAACAAGTAACAGATTAACATTATTTACTTGATGTCTATGATTAATTAGGCTTTATTCCCCCC

Coding sequence (CDS)

ATGTTCCCTTTACAGAAATGCGAAGACAAGTGCTTCCAGATTTCGTTTAATCCTCACCAACACATAATCCCTGAAGATCTCATCTTTGGGCCTCAAGTTTCAGTGGAAGCTCATGATGATAGTAACAACAATAATAATGGTGTCAACAATTTGGGAACTCGTGGAAGAAGGAAGCTGCTTCAGAATTTGGATCATGGCGTTTCGGATCAAGATCATCAAATCAAGTTGATGCATAGAGAAAGGGAGAGGCAAAGAAGACAAGAAATGGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGGGAAAAGGGCGATATCAGATCAAATGAATGGGGCGGTGAATTATATAAAGTATCAGAAGAAGAAAATCAAAGAGTTTGAAGCTAAAAGAGATGAATTGAAGAAGCTGTATAATAGTTCAAATGACTTAGAGATATCAAGAGGACAGACTCCAATTTGCAGCTTCAAAGTTAGCTCCTTTGATGGAGGGCTTGAAATCTTGATCACAACAAATGATTTCCATGGATTTCCCCTTTCAAGAATCTTGAAAGTAATTGTTGATCAAGGGTTGGAAGTTATCAGCTGTGGCTCGACCACGATGAACGACAAATCTATGCACACCATTCAAATGGAGGTTAGTGATTCAACCTCCCTTGATCTCAGTCAGCTTGGAAAGAAGCTTACAGAAGCAGTGCCACAGCTGAAACAAGTAACAGATTAA

Protein sequence

MFPLQKCEDKCFQISFNPHQHIIPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRKLLQNLDHGVSDQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEISRGQTPICSFKVSSFDGGLEILITTNDFHGFPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLTEAVPQLKQVTD

Homology

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BLAST of CmaCh18G012040 vs. Swiss-Prot
Match: BH126_ARATH (Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.2e-30
Identity = 79/180 (43.89%), Postives = 115/180 (63.89%), Query Frame = 1


Query: 65  HGVSDQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKY 124
           H   D   + KL+HR+ ERQRRQEM  L+ +LRT LPL++IKGKRA+SD +NGAVN+IK 
Sbjct: 34  HETDDNKKKKKLLHRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKD 93

Query: 125 QKKKIKEFEAKRDELKKL----YNSSND---LEISRGQTPICSFKVSSFDGGLEILITTN 184
            + +IKE  A+RDEL +     Y S+ D        G++   +  V     GLE+++++N
Sbjct: 94  TEARIKELSARRDELSRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSN 153

Query: 185 DF--HGFPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLTE 236
                  PLS++L+ I ++GLEV+S  +T +ND+ MHTIQ+EV+    +DL  L +KL E
Sbjct: 154 SSGPEALPLSKVLETIQEKGLEVMSSFTTRVNDRLMHTIQVEVNSFGCIDLLWLQQKLVE 213

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BLAST of CmaCh18G012040 vs. Swiss-Prot
Match: BH120_ARATH (Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 75  KLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIKEFEA 134
           KL+HR  ERQRRQEM  L+ SLR+ LPL++IKGKRA+SD +NGAV++IK  + +IK+  A
Sbjct: 28  KLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTRIKDLSA 87

Query: 135 KRDELKKLYNSSNDLEIS-----RGQTPICSFKVSSFDGGLEILITT--NDFHGFPLSRI 194
           +RDELK+       L  S       ++   S  V     G E+++++  +    +PLSR+
Sbjct: 88  RRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCVSGFEVVVSSLASGLEAWPLSRV 147

Query: 195 LKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLTE 236
           L+V+  QGLEVIS  +  +N++ M+TIQ+EV+     DL+ L +KL E
Sbjct: 148 LEVLHGQGLEVISSLTARVNERLMYTIQVEVNSFDCFDLAWLQQKLIE 195

[Close]

BLAST of CmaCh18G012040 vs. Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.2e-26
Identity = 77/171 (45.03%), Postives = 114/171 (66.67%), Query Frame = 1


Query: 75  KLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIKEFEA 134
           K+MHRE ERQRRQEM +LY SLR+LLPL FIKGKR+ SDQ+N AVNYIKY ++KIKE   
Sbjct: 3   KMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSV 62

Query: 135 KRDELK-----KLYNSSN-----DLEISRGQTPICSFKVSSFDGGLEILITTNDFHGFP- 194
           +RD+L       L  SSN     D+E+  G+  +    V     G+EI++++    G P 
Sbjct: 63  RRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVV---VRQCLVGVEIMLSSRCCGGQPR 122

Query: 195 LSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSD-STSLDLSQLGKKL 234
            S +L+V+ + GL +++  S+ ++D+ ++TIQ EV+D +  +DL++L K+L
Sbjct: 123 FSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRL 170

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BLAST of CmaCh18G012040 vs. Swiss-Prot
Match: BH118_ARATH (Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-24
Identity = 69/164 (42.07%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 75  KLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIKEFEA 134
           KL+H+E E++RRQEM +LY SLR+LLPLEFI+GKR+ SDQ+ GAVNYI Y ++ IK+  +
Sbjct: 3   KLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINS 62

Query: 135 KRDELKKL----YNSSNDLEISRGQTPICSFKVSSFDGGLEILITTNDFHGFPLSRILKV 194
           KRD+L  L    + SSN+ E +     +    +     G+EI+++       P S +L+V
Sbjct: 63  KRDDLVLLSGRSFRSSNEQEWNEISNHVV---IRPCLVGIEIVLSILQ---TPFSSVLQV 122

Query: 195 IVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLT 235
           + + GL V+    +++ND+ +HT+Q EV+D   +DL+ L   LT
Sbjct: 123 LREHGLYVLGYICSSVNDRLIHTLQAEVNDLALIDLADLKDTLT 160

[Close]

BLAST of CmaCh18G012040 vs. Swiss-Prot
Match: BH055_ARATH (Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.6e-17
Identity = 64/181 (35.36%), Postives = 99/181 (54.70%), Query Frame = 1


Query: 69  DQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKK 128
           D+    +  H+E ERQRRQE  +L+  LR LLP ++IKGKR+ +D +  AVNYIK  +KK
Sbjct: 70  DEPKNKRAKHKELERQRRQENTSLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQKK 129

Query: 129 IKEFEAKRDELKKLYNSSNDLEISRGQTPICSFKVSSFDG---------------GLEIL 188
           IKE   KRD +K+     +    SRG+  I S   S+                  GLEI+
Sbjct: 130 IKEVSEKRDRIKRSITHPS----SRGEFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIV 189

Query: 189 ITTNDFHGFPLSRILKVIV-DQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKK 234
           ++  + H   LS +L+++  +Q   ++SC ST ++   +HTI  EV +   +  S+L +K
Sbjct: 190 VSCCNRHESCLSSVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVEEGIEVYFSELQEK 246

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BLAST of CmaCh18G012040 vs. TrEMBL
Match: A0A0A0LB70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178570 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 7.1e-89
Identity = 182/254 (71.65%), Postives = 208/254 (81.89%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQHIIPEDLIFGPQVSV-------EAHDDSNNNNNGVNNLGT 60
           M+PL+K E+KCFQISFNPHQHIIPEDLIF   VS        + H++SNN NNGV NL T
Sbjct: 1   MYPLRKSEEKCFQISFNPHQHIIPEDLIFEHHVSAAVGAAHNDNHNNSNNKNNGVKNLST 60

Query: 61  RGRRK-LLQNLDHGVSDQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS 120
             RRK L++ L+    DQDH+IKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS
Sbjct: 61  PRRRKPLVETLED--DDQDHKIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS 120

Query: 121 DQMNGAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEISRGQTPICSFKVSSFDGG-LE 180
           DQMNGAVNYIK+Q+KKIKE EAKRDELKK+ NSSN       + P CSFK+S FDGG +E
Sbjct: 121 DQMNGAVNYIKHQEKKIKEIEAKRDELKKMNNSSNFERSKLEEIPNCSFKISCFDGGVVE 180

Query: 181 ILITTNDFHGFPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGK 240
           ILITT  FHGFPLSRILKV+V+QGLEVI CGS+ +N KS+HTIQ+EV+D TSLDL++LG 
Sbjct: 181 ILITTIGFHGFPLSRILKVVVEQGLEVIRCGSSIINHKSIHTIQIEVNDPTSLDLAELGN 240

Query: 241 KLTEAVPQLKQVTD 246
           KL EAVP L+QVTD
Sbjct: 241 KLREAVPLLRQVTD 252

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BLAST of CmaCh18G012040 vs. TrEMBL
Match: B9I4H5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14080g PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.4e-44
Identity = 114/244 (46.72%), Postives = 158/244 (64.75%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQ-HIIPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRKL 60
           MFPL + ++ CF IS +PHQ H IP+DLI     +++  D +N   N         RR+ 
Sbjct: 1   MFPLHQGDELCFNISSDPHQQHNIPQDLILARYAALQGSDTTNKMEND--------RRRF 60

Query: 61  LQNLD--HGVS---DQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQ 120
           L ++D  H V+    +++  K+MHR  ERQRRQEM  LY SLR LLPLEFIKGKR+ISD 
Sbjct: 61  LISMDSNHEVARDHSKNNNKKMMHRNIERQRRQEMTTLYASLRALLPLEFIKGKRSISDH 120

Query: 121 MNGAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLE--ISRGQTPICSFKVSSFDGGLEI 180
           MN +VNYIKY +KKIKE  AKRD LKK  N S D     S   +PI    +  + GG+E+
Sbjct: 121 MNESVNYIKYLQKKIKELSAKRDGLKKSPNLSFDSPSGSSNKYSPISPVTLQPYPGGIEV 180

Query: 181 LITTNDFHG--FPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLG 235
            +  +DF G   PLSR+L+V++++G+ V++C ST +N++  HT+Q EV+D   L+LS+L 
Sbjct: 181 -VFDSDFRGQDSPLSRVLQVLLEEGISVVNCVSTKVNERLFHTVQTEVNDPACLNLSELR 235

[Close]

BLAST of CmaCh18G012040 vs. TrEMBL
Match: B9ICZ3_POPTR (Basix helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0015s14070g PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42
Identity = 114/245 (46.53%), Postives = 160/245 (65.31%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQHIIPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRKLL 60
           MFPL +  + CF+IS +PHQ     DLI   Q + E H  ++  NN       +GRR+ +
Sbjct: 1   MFPLHQGGELCFKISSSPHQQDNIPDLILAHQYA-EIHGSTDITNNM-----EKGRRRNI 60

Query: 61  QNLDHGVSDQDH----QIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMN 120
            ++D+  + +D+    + K+MHR+ ERQRRQEM  LY SLR LLPLEFIKGKR+ISD MN
Sbjct: 61  ISMDNNEAARDNNNNSKKKMMHRDIERQRRQEMTTLYASLRALLPLEFIKGKRSISDHMN 120

Query: 121 GAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEIS--RGQTPICSFKVSSFDGGLEILI 180
            AVNYIKY +KKIKE  AKRDELKKL + S+    S    ++   S  +  + GG+EI  
Sbjct: 121 EAVNYIKYLQKKIKETSAKRDELKKLSDFSSVASPSGCSNKSSSSSVALQPYPGGIEITF 180

Query: 181 TTNDFHG--FPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKK 238
             +D  G   PLSR+L+V++++G+ VI+C ST +N++  H++Q EV+D T L+LS+L +K
Sbjct: 181 -DSDLMGRDLPLSRVLQVLLEEGISVINCVSTKVNERLFHSVQTEVNDPTCLNLSELWQK 238

[Close]

BLAST of CmaCh18G012040 vs. TrEMBL
Match: A0A151QME0_CAJCA (Transcription factor bHLH36 OS=Cajanus cajan GN=KK1_048207 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.5e-42
Identity = 106/241 (43.98%), Postives = 156/241 (64.73%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQHI--IPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRK 60
           MFPLQ+  +   Q S +PHQH   I EDLI     S+    D N+++  + +   +    
Sbjct: 1   MFPLQRGNELVIQFSNSPHQHEHKISEDLILDDYASL----DVNDSDRKITSSRPKKLFC 60

Query: 61  LLQNLDHGVSDQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGA 120
           +    +HG S++ ++ K++H+E ERQRRQEM   + SLR+LLPLEFIKGKR+ISD MN A
Sbjct: 61  VADKKNHGNSNEHNKKKMIHKEIERQRRQEMATFFASLRSLLPLEFIKGKRSISDHMNEA 120

Query: 121 VNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEISRGQTPICSFKVSSFDGGLEILITTND 180
           VNYIK+ +  IKE  A+RDELKKL N SN      G    C+F V   +G + I IT+  
Sbjct: 121 VNYIKHMQNNIKELGARRDELKKLSNYSNTENNQEGLHTSCNFTVHENNGIMGIEITSGS 180

Query: 181 FHGFP-LSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLTEAV 239
               P LS++LK+++++GLE++SC ST +N + ++++Q EV++S+S+DLS+L KK+  A 
Sbjct: 181 REKRPKLSKLLKLLIEEGLEIVSCLSTEVNGRLIYSVQCEVNNSSSVDLSELRKKVCNAF 237

[Close]

BLAST of CmaCh18G012040 vs. TrEMBL
Match: A0A0B2RHW1_GLYSO (Transcription factor bHLH126 OS=Glycine soja GN=glysoja_029693 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.3e-39
Identity = 103/246 (41.87%), Postives = 153/246 (62.20%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPH--QHIIPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRK 60
           M PLQ+  +   Q S +PH  QH I EDLI     S+  +D   +N   + +  ++  +K
Sbjct: 1   MLPLQRGNELVIQFSNSPHHQQHKISEDLILDDYASLNVND---SNQKFITSSSSQPTKK 60

Query: 61  LLQNLDHGVSDQ-DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNG 120
           L    +    D  +H+ K++H E ER+RRQEM   Y SLR+LLPLEFIKGKR+ISD MN 
Sbjct: 61  LFYGANKKNHDSNEHKKKMIHMEIERKRRQEMATFYASLRSLLPLEFIKGKRSISDHMNE 120

Query: 121 AVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEISR-GQTPICSFKVSSFDGGLEILITT 180
           A NYIK+ +  IKE  AKRDE+KKL N  N++E +  G    C+F +   +G + I IT+
Sbjct: 121 AANYIKHMQNNIKELGAKRDEMKKLSNHCNNMENNHAGLHTSCNFTIHENNGIMGIEITS 180

Query: 181 NDFHGFP-LSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLTE 240
                 P +S++L+ + ++G EV+SC ST +N + +H++Q EV++S S+DLS+L KK++ 
Sbjct: 181 GFREEKPKISKLLQFLTEEGFEVVSCFSTEVNGRLLHSVQCEVNNSNSVDLSELRKKVSN 240

Query: 241 AVPQLK 242
           A P  +
Sbjct: 241 AFPTFR 243

[Close]

BLAST of CmaCh18G012040 vs. TAIR10
Match: AT4G25410.1 (AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 4.6e-31
Identity = 79/180 (43.89%), Postives = 115/180 (63.89%), Query Frame = 1


Query: 65  HGVSDQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKY 124
           H   D   + KL+HR+ ERQRRQEM  L+ +LRT LPL++IKGKRA+SD +NGAVN+IK 
Sbjct: 34  HETDDNKKKKKLLHRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKD 93

Query: 125 QKKKIKEFEAKRDELKKL----YNSSND---LEISRGQTPICSFKVSSFDGGLEILITTN 184
            + +IKE  A+RDEL +     Y S+ D        G++   +  V     GLE+++++N
Sbjct: 94  TEARIKELSARRDELSRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSN 153

Query: 185 DF--HGFPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLTE 236
                  PLS++L+ I ++GLEV+S  +T +ND+ MHTIQ+EV+    +DL  L +KL E
Sbjct: 154 SSGPEALPLSKVLETIQEKGLEVMSSFTTRVNDRLMHTIQVEVNSFGCIDLLWLQQKLVE 213

[Close]

BLAST of CmaCh18G012040 vs. TAIR10
Match: AT5G51790.1 (AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 8.2e-28
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 75  KLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIKEFEA 134
           KL+HR  ERQRRQEM  L+ SLR+ LPL++IKGKRA+SD +NGAV++IK  + +IK+  A
Sbjct: 28  KLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTRIKDLSA 87

Query: 135 KRDELKKLYNSSNDLEIS-----RGQTPICSFKVSSFDGGLEILITT--NDFHGFPLSRI 194
           +RDELK+       L  S       ++   S  V     G E+++++  +    +PLSR+
Sbjct: 88  RRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCVSGFEVVVSSLASGLEAWPLSRV 147

Query: 195 LKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLTE 236
           L+V+  QGLEVIS  +  +N++ M+TIQ+EV+     DL+ L +KL E
Sbjct: 148 LEVLHGQGLEVISSLTARVNERLMYTIQVEVNSFDCFDLAWLQQKLIE 195

[Close]

BLAST of CmaCh18G012040 vs. TAIR10
Match: AT5G51780.1 (AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-27
Identity = 77/171 (45.03%), Postives = 114/171 (66.67%), Query Frame = 1


Query: 75  KLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIKEFEA 134
           K+MHRE ERQRRQEM +LY SLR+LLPL FIKGKR+ SDQ+N AVNYIKY ++KIKE   
Sbjct: 3   KMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSV 62

Query: 135 KRDELK-----KLYNSSN-----DLEISRGQTPICSFKVSSFDGGLEILITTNDFHGFP- 194
           +RD+L       L  SSN     D+E+  G+  +    V     G+EI++++    G P 
Sbjct: 63  RRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVV---VRQCLVGVEIMLSSRCCGGQPR 122

Query: 195 LSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSD-STSLDLSQLGKKL 234
            S +L+V+ + GL +++  S+ ++D+ ++TIQ EV+D +  +DL++L K+L
Sbjct: 123 FSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRL 170

[Close]

BLAST of CmaCh18G012040 vs. TAIR10
Match: AT4G25400.1 (AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 69/164 (42.07%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 75  KLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIKEFEA 134
           KL+H+E E++RRQEM +LY SLR+LLPLEFI+GKR+ SDQ+ GAVNYI Y ++ IK+  +
Sbjct: 3   KLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINS 62

Query: 135 KRDELKKL----YNSSNDLEISRGQTPICSFKVSSFDGGLEILITTNDFHGFPLSRILKV 194
           KRD+L  L    + SSN+ E +     +    +     G+EI+++       P S +L+V
Sbjct: 63  KRDDLVLLSGRSFRSSNEQEWNEISNHVV---IRPCLVGIEIVLSILQ---TPFSSVLQV 122

Query: 195 IVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKKLT 235
           + + GL V+    +++ND+ +HT+Q EV+D   +DL+ L   LT
Sbjct: 123 LREHGLYVLGYICSSVNDRLIHTLQAEVNDLALIDLADLKDTLT 160

[Close]

BLAST of CmaCh18G012040 vs. TAIR10
Match: AT1G12540.1 (AT1G12540.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-18
Identity = 64/181 (35.36%), Postives = 99/181 (54.70%), Query Frame = 1


Query: 69  DQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKK 128
           D+    +  H+E ERQRRQE  +L+  LR LLP ++IKGKR+ +D +  AVNYIK  +KK
Sbjct: 70  DEPKNKRAKHKELERQRRQENTSLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQKK 129

Query: 129 IKEFEAKRDELKKLYNSSNDLEISRGQTPICSFKVSSFDG---------------GLEIL 188
           IKE   KRD +K+     +    SRG+  I S   S+                  GLEI+
Sbjct: 130 IKEVSEKRDRIKRSITHPS----SRGEFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIV 189

Query: 189 ITTNDFHGFPLSRILKVIV-DQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKK 234
           ++  + H   LS +L+++  +Q   ++SC ST ++   +HTI  EV +   +  S+L +K
Sbjct: 190 VSCCNRHESCLSSVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVEEGIEVYFSELQEK 246

[Close]

BLAST of CmaCh18G012040 vs. NCBI nr
Match: gi|449460770|ref|XP_004148118.1| (PREDICTED: transcription factor bHLH118-like [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-88
Identity = 182/254 (71.65%), Postives = 208/254 (81.89%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQHIIPEDLIFGPQVSV-------EAHDDSNNNNNGVNNLGT 60
           M+PL+K E+KCFQISFNPHQHIIPEDLIF   VS        + H++SNN NNGV NL T
Sbjct: 1   MYPLRKSEEKCFQISFNPHQHIIPEDLIFEHHVSAAVGAAHNDNHNNSNNKNNGVKNLST 60

Query: 61  RGRRK-LLQNLDHGVSDQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS 120
             RRK L++ L+    DQDH+IKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS
Sbjct: 61  PRRRKPLVETLED--DDQDHKIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS 120

Query: 121 DQMNGAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEISRGQTPICSFKVSSFDGG-LE 180
           DQMNGAVNYIK+Q+KKIKE EAKRDELKK+ NSSN       + P CSFK+S FDGG +E
Sbjct: 121 DQMNGAVNYIKHQEKKIKEIEAKRDELKKMNNSSNFERSKLEEIPNCSFKISCFDGGVVE 180

Query: 181 ILITTNDFHGFPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGK 240
           ILITT  FHGFPLSRILKV+V+QGLEVI CGS+ +N KS+HTIQ+EV+D TSLDL++LG 
Sbjct: 181 ILITTIGFHGFPLSRILKVVVEQGLEVIRCGSSIINHKSIHTIQIEVNDPTSLDLAELGN 240

Query: 241 KLTEAVPQLKQVTD 246
           KL EAVP L+QVTD
Sbjct: 241 KLREAVPLLRQVTD 252

[Close]

BLAST of CmaCh18G012040 vs. NCBI nr
Match: gi|659077312|ref|XP_008439138.1| (PREDICTED: transcription factor bHLH118-like [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 1.5e-87
Identity = 180/254 (70.87%), Postives = 206/254 (81.10%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQHIIPEDLIFGPQVSVEA-------HDDSNNNNNGVNNLGT 60
           M+PL+K E+KCFQISFNPHQHIIPEDLIFG   S           ++SNN NNGV NL  
Sbjct: 1   MYPLRKSEEKCFQISFNPHQHIIPEDLIFGHHGSAAVGAADNNNDNNSNNKNNGVKNLSM 60

Query: 61  RGRRK-LLQNLDHGVSDQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS 120
             RRK L++ L+    DQDH+IKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS
Sbjct: 61  ARRRKPLVETLED--DDQDHKIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAIS 120

Query: 121 DQMNGAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEISRGQTPICSFKVSSFDGG-LE 180
           DQMNGAVNYIK+Q++KIKE EAKRDELKK+YNS+N       +T  CSFK+S FDGG +E
Sbjct: 121 DQMNGAVNYIKHQEQKIKEIEAKRDELKKMYNSNNFERSKLEETSNCSFKISCFDGGVVE 180

Query: 181 ILITTNDFHGFPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGK 240
           ILITT  FHGFPLSRILKV+V+QGLEVI CGST +N KS+HTIQ+EV+D TSLDL++LG 
Sbjct: 181 ILITTIGFHGFPLSRILKVVVEQGLEVIRCGSTIINHKSIHTIQIEVNDPTSLDLAELGN 240

Query: 241 KLTEAVPQLKQVTD 246
           KL EAVP L+QVTD
Sbjct: 241 KLIEAVPLLRQVTD 252

[Close]

BLAST of CmaCh18G012040 vs. NCBI nr
Match: gi|743856809|ref|XP_011030012.1| (PREDICTED: transcription factor bHLH118-like [Populus euphratica])

HSP 1 Score: 193.0 bits (489), Expect = 6.3e-46
Identity = 115/244 (47.13%), Postives = 160/244 (65.57%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQ-HIIPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRKL 60
           MFPL + ++ CF IS +PHQ H IP+DLI     +++  D +N   NG        RR+ 
Sbjct: 1   MFPLHQGDELCFNISSDPHQQHDIPQDLILARYAALQGSDTTNKMENG--------RRRF 60

Query: 61  LQNLD--HGVS---DQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQ 120
           L ++D  H V+    +++  K+MHR  ERQRRQEM  LY +LR LLPLEFIKGKR+ISD 
Sbjct: 61  LISIDSNHDVARDHSKNNNKKMMHRNIERQRRQEMTTLYATLRALLPLEFIKGKRSISDH 120

Query: 121 MNGAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLE--ISRGQTPICSFKVSSFDGGLEI 180
           MN +VNYIKY + KIKE  AKRD LKKL N S D     S   +PI    +  + GG+E+
Sbjct: 121 MNESVNYIKYLQNKIKELSAKRDGLKKLSNLSFDSPSGSSNKYSPISPVTLQPYPGGIEV 180

Query: 181 LITTNDFHG--FPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLG 235
            +  +DF G  FPLSR+L+V++++G+ V++C ST +N++  HT+Q EV+D   L+LS+L 
Sbjct: 181 -VFDSDFRGQDFPLSRVLQVLLEEGISVVNCVSTKVNERIFHTVQTEVNDPACLNLSELR 235

[Close]

BLAST of CmaCh18G012040 vs. NCBI nr
Match: gi|224122516|ref|XP_002318856.1| (hypothetical protein POPTR_0012s14080g [Populus trichocarpa])

HSP 1 Score: 187.2 bits (474), Expect = 3.4e-44
Identity = 114/244 (46.72%), Postives = 158/244 (64.75%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQ-HIIPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRKL 60
           MFPL + ++ CF IS +PHQ H IP+DLI     +++  D +N   N         RR+ 
Sbjct: 1   MFPLHQGDELCFNISSDPHQQHNIPQDLILARYAALQGSDTTNKMEND--------RRRF 60

Query: 61  LQNLD--HGVS---DQDHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQ 120
           L ++D  H V+    +++  K+MHR  ERQRRQEM  LY SLR LLPLEFIKGKR+ISD 
Sbjct: 61  LISMDSNHEVARDHSKNNNKKMMHRNIERQRRQEMTTLYASLRALLPLEFIKGKRSISDH 120

Query: 121 MNGAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLE--ISRGQTPICSFKVSSFDGGLEI 180
           MN +VNYIKY +KKIKE  AKRD LKK  N S D     S   +PI    +  + GG+E+
Sbjct: 121 MNESVNYIKYLQKKIKELSAKRDGLKKSPNLSFDSPSGSSNKYSPISPVTLQPYPGGIEV 180

Query: 181 LITTNDFHG--FPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLG 235
            +  +DF G   PLSR+L+V++++G+ V++C ST +N++  HT+Q EV+D   L+LS+L 
Sbjct: 181 -VFDSDFRGQDSPLSRVLQVLLEEGISVVNCVSTKVNERLFHTVQTEVNDPACLNLSELR 235

[Close]

BLAST of CmaCh18G012040 vs. NCBI nr
Match: gi|224134607|ref|XP_002321864.1| (basix helix-loop-helix family protein [Populus trichocarpa])

HSP 1 Score: 180.6 bits (457), Expect = 3.2e-42
Identity = 114/245 (46.53%), Postives = 160/245 (65.31%), Query Frame = 1


Query: 1   MFPLQKCEDKCFQISFNPHQHIIPEDLIFGPQVSVEAHDDSNNNNNGVNNLGTRGRRKLL 60
           MFPL +  + CF+IS +PHQ     DLI   Q + E H  ++  NN       +GRR+ +
Sbjct: 1   MFPLHQGGELCFKISSSPHQQDNIPDLILAHQYA-EIHGSTDITNNM-----EKGRRRNI 60

Query: 61  QNLDHGVSDQDH----QIKLMHRERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMN 120
            ++D+  + +D+    + K+MHR+ ERQRRQEM  LY SLR LLPLEFIKGKR+ISD MN
Sbjct: 61  ISMDNNEAARDNNNNSKKKMMHRDIERQRRQEMTTLYASLRALLPLEFIKGKRSISDHMN 120

Query: 121 GAVNYIKYQKKKIKEFEAKRDELKKLYNSSNDLEIS--RGQTPICSFKVSSFDGGLEILI 180
            AVNYIKY +KKIKE  AKRDELKKL + S+    S    ++   S  +  + GG+EI  
Sbjct: 121 EAVNYIKYLQKKIKETSAKRDELKKLSDFSSVASPSGCSNKSSSSSVALQPYPGGIEITF 180

Query: 181 TTNDFHG--FPLSRILKVIVDQGLEVISCGSTTMNDKSMHTIQMEVSDSTSLDLSQLGKK 238
             +D  G   PLSR+L+V++++G+ VI+C ST +N++  H++Q EV+D T L+LS+L +K
Sbjct: 181 -DSDLMGRDLPLSRVLQVLLEEGISVINCVSTKVNERLFHSVQTEVNDPTCLNLSELWQK 238

The following BLAST results are available for this feature:

BLAST of CmaCh18G012040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH126_ARATH	8.2e-30	43.89	Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1	[more]
BH120_ARATH	1.5e-26	43.45	Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2	[more]
BH036_ARATH	4.2e-26	45.03	Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1	[more]
BH118_ARATH	4.0e-24	42.07	Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1	[more]
BH055_ARATH	3.6e-17	35.36	Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1	[more]

BLAST of CmaCh18G012040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB70_CUCSA	7.1e-89	71.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178570 PE=4 SV=1	[more]
B9I4H5_POPTR	2.4e-44	46.72	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14080g PE=4 SV=1	[more]
B9ICZ3_POPTR	2.2e-42	46.53	Basix helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0015s14070...	[more]
A0A151QME0_CAJCA	6.5e-42	43.98	Transcription factor bHLH36 OS=Cajanus cajan GN=KK1_048207 PE=4 SV=1	[more]
A0A0B2RHW1_GLYSO	2.3e-39	41.87	Transcription factor bHLH126 OS=Glycine soja GN=glysoja_029693 PE=4 SV=1	[more]

BLAST of CmaCh18G012040 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25410.1	4.6e-31	43.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51790.1	8.2e-28	43.45	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	2.4e-27	45.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25400.1	2.2e-25	42.07	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G12540.1	2.0e-18	35.36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmaCh18G012040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460770\|ref\|XP_004148118.1\|	1.0e-88	71.65	PREDICTED: transcription factor bHLH118-like [Cucumis sativus]	[more]
gi\|659077312\|ref\|XP_008439138.1\|	1.5e-87	70.87	PREDICTED: transcription factor bHLH118-like [Cucumis melo]	[more]
gi\|743856809\|ref\|XP_011030012.1\|	6.3e-46	47.13	PREDICTED: transcription factor bHLH118-like [Populus euphratica]	[more]
gi\|224122516\|ref\|XP_002318856.1\|	3.4e-44	46.72	hypothetical protein POPTR_0012s14080g [Populus trichocarpa]	[more]
gi\|224134607\|ref\|XP_002321864.1\|	3.2e-42	46.53	basix helix-loop-helix family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR015660	MASH1/Ascl1a-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G012040.1	CmaCh18G012040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 75..143 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 77..124 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 79..131 score: 0.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 73..125 score: 12
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 71..140 score: 4.71
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 1..239 score: 2.3
None	No IPR available	unknown	Coil	Coil	coord: 122..149 scor
None	No IPR available	PANTHER	PTHR13935:SF54	TRANSCRIPTION FACTOR BHLH118-RELATED	coord: 1..239 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G012040	Cucsa.251220	Cucumber (Gy14) v1	cgycmaB0716
CmaCh18G012040	Cla006231	Watermelon (97103) v1	cmawmB373
CmaCh18G012040	Csa3G178570	Cucumber (Chinese Long) v2	cmacuB408
CmaCh18G012040	Csa5G157230	Cucumber (Chinese Long) v2	cmacuB420
CmaCh18G012040	MELO3C006854	Melon (DHL92) v3.5.1	cmameB375
CmaCh18G012040	ClCG05G007630	Watermelon (Charleston Gray)	cmawcgB365
CmaCh18G012040	ClCG01G003340	Watermelon (Charleston Gray)	cmawcgB352
CmaCh18G012040	CSPI03G16370	Wild cucumber (PI 183967)	cmacpiB413
CmaCh18G012040	CmoCh16G001700	Cucurbita moschata (Rifu)	cmacmoB405
CmaCh18G012040	CmoCh18G012260	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G012040	Lsi05G012840	Bottle gourd (USVL1VR-Ls)	cmalsiB387
CmaCh18G012040	Lsi09G003350	Bottle gourd (USVL1VR-Ls)	cmalsiB365
CmaCh18G012040	Cp4.1LG09g01220	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G012040	MELO3C005610.2	Melon (DHL92) v3.6.1	cmamedB407
CmaCh18G012040	MELO3C006854.2	Melon (DHL92) v3.6.1	cmamedB432
CmaCh18G012040	CsaV3_3G016560	Cucumber (Chinese Long) v3	cmacucB0487
CmaCh18G012040	CsaV3_5G003410	Cucumber (Chinese Long) v3	cmacucB0502
CmaCh18G012040	Cla97C01G003410	Watermelon (97103) v2	cmawmbB403
CmaCh18G012040	Cla97C05G089540	Watermelon (97103) v2	cmawmbB424
CmaCh18G012040	Bhi01G001025	Wax gourd	cmawgoB0507
CmaCh18G012040	CsGy5G003320	Cucumber (Gy14) v2	cgybcmaB630
CmaCh18G012040	CsGy3G016460	Cucumber (Gy14) v2	cgybcmaB352
CmaCh18G012040	Carg26802	Silver-seed gourd	carcmaB0011

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G012040	CmaCh16G001650	Cucurbita maxima (Rimu)	cmacmaB338

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G012040	Silver-seed gourd	carcmaB0996
CmaCh18G012040	Silver-seed gourd	carcmaB1208
CmaCh18G012040	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh18G012040	Cucurbita moschata (Rifu)	cmacmoB416
CmaCh18G012040	Cucurbita pepo (Zucchini)	cmacpeB425
CmaCh18G012040	Cucurbita pepo (Zucchini)	cmacpeB453