CmaCh17G012220 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	conserved peptide upstream open reading frame 8
Location	Cma_Chr17 : 8426179 .. 8426742 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAAATGTAGATCAGGGCGTTGAATTTCTCTGTGATTCTCGTCGTTTCTTTTGGTCAAAAAGCTTCAAATCTGTTTCGTTCTGTAAAGGGGCTTGTTCAAATCCAACCCCCTTTCTCTTTTGACGTTTTTTGGTTCTTGGGTTTTGGTTTTCGGTTTTCATTTGAGCCTTGAAATCTCCCTTTTCTTGTCTGGTTGTTCTATTCTTGTTTTTATGACGATTTCATAAGTTCATCCATGTCGTCCGACATAATTTAGGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGAAAAAGAGCTCTTACTGTTGCTGTTCTTCTTCTTAATGGATTGTTTTACTTATACCTACTCTAATGGAGTCCACTGCGTTAGAAGCTATGCGATATGTGCTGAAATTTGCTGATACCATCTTATTTGTGTTGAATTGTTGAGTTCAGGGGGATGGGAACGGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

mRNA sequence

ATGCAAGAAAATGTAGATCAGGGCGTTGAATTTCTCTGTGATTCTCGTCGTTTCTTTTGGTCAAAAAGCTTCAAATCTGTTTCGTTCTGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGAAAAAGAGCTCTTACTGTTGCTGTTCTTCTTCTTAATGGATTGGGGATGGGAACGGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

Coding sequence (CDS)

ATGCAAGAAAATGTAGATCAGGGCGTTGAATTTCTCTGTGATTCTCGTCGTTTCTTTTGGTCAAAAAGCTTCAAATCTGTTTCGTTCTGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGAAAAAGAGCTCTTACTGTTGCTGTTCTTCTTCTTAATGGATTGGGGATGGGAACGGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

Protein sequence

MQENVDQGVEFLCDSRRFFWSKSFKSVSFWFNLALVRVICGGSARKRALTVAVLLLNGLGMGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS

Homology

[Close]

BLAST of CmaCh17G012220 vs. NCBI nr
Match: gi|1009147569|ref|XP_015891481.1| (PREDICTED: uncharacterized protein LOC107425927 [Ziziphus jujuba])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 61 MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 95
          MGT+ LL P +GPPIKRRAGLRIKQAGRGSYRGS
Sbjct: 1  MGTNRLLLPTLGPPIKRRAGLRIKQAGRGSYRGS 34

[Close]

BLAST of CmaCh17G012220 vs. NCBI nr
Match: gi|778727453|ref|XP_011659262.1| (PREDICTED: uncharacterized protein LOC101216585 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 61 MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 95
          MGTD LL P +GPPIKRRAGLR KQAGRGSYRGS
Sbjct: 1  MGTDRLLLPTVGPPIKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of CmaCh17G012220 vs. NCBI nr
Match: gi|823128414|ref|XP_012442675.1| (PREDICTED: uncharacterized protein LOC105767649 [Gossypium raimondii])

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-06
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 61 MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 95
          MGTD LL P +GPPIK RAGLR KQAGRGSYRGS
Sbjct: 1  MGTDSLLLPTVGPPIKPRAGLRRKQAGRGSYRGS 34

The following BLAST results are available for this feature:

BLAST of CmaCh17G012220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012220 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009147569\|ref\|XP_015891481.1\|	1.1e-06	85.29	PREDICTED: uncharacterized protein LOC107425927 [Ziziphus jujuba]	[more]
gi\|778727453\|ref\|XP_011659262.1\|	1.4e-06	85.29	PREDICTED: uncharacterized protein LOC101216585 [Cucumis sativus]	[more]
gi\|823128414\|ref\|XP_012442675.1\|	7.1e-06	82.35	PREDICTED: uncharacterized protein LOC105767649 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012220.1	CmaCh17G012220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G012220	CmoCh17G011990	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G012220	Carg07293	Silver-seed gourd	carcmaB0142

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G012220	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G012220	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G012220	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G012220	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G012220	Watermelon (97103) v1	cmawmB328
CmaCh17G012220	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G012220	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G012220	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G012220	Cucumber (Gy14) v2	cgybcmaB926
CmaCh17G012220	Melon (DHL92) v3.6.1	cmamedB380
CmaCh17G012220	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G012220	Watermelon (97103) v2	cmawmbB386
CmaCh17G012220	Wax gourd	cmawgoB0489
CmaCh17G012220	Cucurbita maxima (Rimu)	cmacmaB382
CmaCh17G012220	Cucumber (Gy14) v1	cgycmaB1078