Carg07293 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07293
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	conserved peptide upstream open reading frame 8
Location	Cucurbita_argyrosperma_scaffold_017 : 1172707 .. 1176512 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATGAAATTCGAAAGATGAGGAGAGTAGAAACAGTACCAGAAGGGATGGAGGTGGAGCACGATCAATGTTGTAGCGCCGTCAACAAGCTTAGGGTTCCGCCGGGTTAGAGAGATGAAGACTTGAAGGAGCTCATCTTGGAGTTCCACCATAGCTACGAACTCCGCCTGGCTAATGCTTAATGCTCAGAGGGAAAGGAAAAACAGCTACTGCTAGGGTTCTTTACTTCAAATAAATATATATATATATATTTTGGTAAAATTTAGATTAATTTTCAAATTATAGATAATAAAGTTTTGTTTCCATAAAAATTTAAAAAGAAAAAATCATTTTTAAATGAATTTACTTTGAAACATCTTAATATAATTTTTCTAATAATAAAAATTATAGAAAACTTTGTTTTCAATAAAATAATAATTATTAGATACAAAAGTGAAAATTCTAACATTATTAGATATAAAATTGAAAATTTAACAACTTATTAGAAACTTTTTTAAATTTCAAAACGTGAAACTGGCTCGTTTTTGCTTGTGTTCTAGGGCAATTTCGAAATGGAGCGGTTTTTTCCCACTTATGTGAAAAAAAATTATTTCTTAACATTGTGGTGGGAAATGCCCCAACTCGATGGTTAAGAACCGAATTTTTCGAAACCGGCGCGCTTTCGTTTGTGTTCTAGGGCAGTTCCAAAATGGAGCGGTTTTATTTCTTGGCATTGAGTATACAACAGGGAGGATCGAACCATCAACTCTTGAAATAATAATTGAATCTATTAAAATATCGAGAGTACGAGAGAAGAGACTGATATTATTTTGGAGGTAATGGTCACTAATGTCACAAATATGCATTATGGAAAGTTTGATTTTCAAATATATCTTCCATTTTCACATATAATCGATATCGAAATTGACTGAATGACCATTGGAGAGAGATATCAAAGTTGTCACTCATGAGTATCAAGACTTAGGACTCTGTCTTGTAGATTACGTGTTAGTAAAAAGTTAAGCCATCGAATCTAAAGATTCGAACCTTTGACCTTTTAGTAAATTGTGTATCTTTTATCTCGGTTATAACAATATTAATATTACTAGAGTTTTATAAATTTTATTTAACAATGTGCACCGATATAAAAATTGATAATTTGACCTATTTTTCTTATGACTCACGCCTAGACTCAAATTTGGATTTGACAATATACTGACCCGACCTTGATATTCACTTGCAACATGGTCAGGTTACCTAGTTCTCGTTTCTAAGAATGAAAATTATCCTCACAATCTAAGTGAAAACAAAAAGAAATATGCATCGAGTGATCTTTTTAGTCAGTTTCAAGCGCTAAAACTTACAAAAATTACAAAAAAAAATAGTGAAAATTGAGGAATAAATTAGGTATTAAATAATGGTACGATAAATAATTCACGAAAAAAGAAAATGCAATGATTATAAGTGAAATCATTTTGGACAAATTGAGTATTTTTTAGGCGCAATTGATCGCATTAGATTTTCATCACTTATCTTTCTTATCATTTGGTTTCTTTTTCTGAACAGTGTTAACAACTCTCTACAATGGTATGATATTATCCATTTTGATAATAATTCTCGTGCCTTCTCTAAAAGGTCTCATACTAATGAAACAATCCTCCACTCGAACAAAATACACTATAGAGCCTCCCTGAGGCCTATGGAGCTCTCGAATAACCTCTCTTTAATCGAGGCTCGATTCCTTATCTTAAGCTCTCGAACAAAGTACATTCTTTGTTCGACATTTGAGGATTCTATTGACATGACTAAGATCAAGGCATGACTCTGATACCATGTTAGGAATCACGATCTCACAATGGTATGATAATCTCTCGTGGTTTTACTTTTGACCTTCTCAAAAGATCTCGTACCAATAGAGTTTTTTTTTTTTTTTTTTTAAAAAAAAAAGAACCGATGAAATCATACATTTAACTTTTTTGAATTTTCTTGAAAAAGGCATTCCTTTTTTGACATTATTTTGTTTTGTTCCTAATTATTCATGACAAAAAGTAGATTTTCTTTTTCCCTATAATCACTTCATCTCCCAAAAGGGAACAAACAAAATTAAATAAAAAATAAAAAATAAAAAAAAATGATTGGAAATGAATAGCAAAAATCCCACAATATCACCCATTCTTAAAACACACATCATGGGATTCCCAAAACGATGTCGGCGCATACAACATTGTTGAAATAACTACAACATCGAGCTAAAATAAAAACTTTAAAAAAAATAACACATGATGACTTCGACATTCTCTTGTAACATGATTTATTCCAGCATGTTTTATTTTCATCCATATAAACTTCAGTGAAATTTTTATAAGGTTGTCCAACAGATTTGCTCGAACTAAAACACGCTTAACTATGAACCTTTTATGATTGAGCTACCAAAAAAAAAAAAAGTACACCGTGTTAACAATGGAATCACGACAACTTTTATAAACTATAAAATCATGGTTGAAAAAGACGTCAAAGGAGCATTCATATGCCCTTTGTCCAACAAAAAAAAAAAAAAAAAAAAGTTTTTTTTTTCTTCTCCTTCAAGGGAGCATTTTCCTTCCATAAACATCATCTTGTTTGCCACTTTTATTTTTTACACTTACACCCAAGGTGAATGTACCCACCAAAATAAATAAATATATATATATATATATATATATACACTTAACGGATGATCGGGACATTTTTGTTTAAAATTATTTTTACAGATGAACGATAATTCTAACATGTTTTTTTGACATATTTTCTGACATGTTTTGTCCTTGTTTATATGTCTGTGAAAAGTTTATTTCAAGAGGTCATTTAACTAAGAATTGGTCTAATAGTTCTATTTCACTTCTTGCCGTCTATCACAAAACATATTACAAAGACACCCCACTAAAAAGGAATCACCATCTAATGTGCGCCGGGAGAATAAGACGGGTGAATACAACGACTGAGCAGCCCCCAGTTCCCCGGCAATGCTAAAATGAGCCGTCCGGTTGTATTAAAGGCGTTGGTTTTTCAAGTTCTCCCACCATCCGTTGCTGTGGCTTGTGAGTGCGTTTCTGTTCTGTTCTGTTCTGTTATTTTGCCCTCACAAATTCAGGAAAAAGCGAACAAAACTCAATACAAAACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCATTTCAGCCTTTTCCGTCTCCCTCTGTGAAATTCGGAGTCAAAACAAGAAAAGGAAAGGAATATGCAAGAAAATGTAGATCAGGGCGTTGAATTTCTCTGTGATTCTCGTCGTTTCTTTTGGTCAAAAAGCTTCAAATCTGTTTCGTTCTGTAAAGGGGCTTGTTAAAATCCAACCCTCTTTCTCTTTGACGTTTTTTGGTTCTTGGGTTTTGGTTTTCGGCTCTTATTTGAGCCTTGAAATCGCCCTTTTCTTGTTTCGTTGTTCTGTTTTTGTTTTTATGACGATTTCGTAAGTTCATCCATGTCGTCCGACATAATTTAGGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGTAAAAGAGCTCTTACTGTTGCTGTTCTTGTTCTTAATGGATTGTTTTACTTATACCTACTCTATTGGAGTCCACTGCGTTAGAAGCTATGCGATATGTGCTGAAATTTGCTGATACCATCTTATTTGTGTTGAATTGTTGAGTTCAGGGGGATGGGAACTGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

mRNA sequence

ATGGCGGATGAAATTCGAAAGATGAGGAGAGTAGAAACAGTACCAGAAGGGATGGAGGTGGAGCACGATCAATGTTGTAGCGCCGTCAACAAGCTTAGGGTTCCGCCGGGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGTAAAAGAGCTCTTACTGTTGCTGTTCTTGTTCTTAATGGATTGGGGATGGGAACTGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

Coding sequence (CDS)

ATGGCGGATGAAATTCGAAAGATGAGGAGAGTAGAAACAGTACCAGAAGGGATGGAGGTGGAGCACGATCAATGTTGTAGCGCCGTCAACAAGCTTAGGGTTCCGCCGGGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGTAAAAGAGCTCTTACTGTTGCTGTTCTTGTTCTTAATGGATTGGGGATGGGAACTGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

Protein sequence

MADEIRKMRRVETVPEGMEVEHDQCCSAVNKLRVPPGFNLALVRVICGGSASKRALTVAVLVLNGLGMGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS

Homology

[Close]

BLAST of Carg07293 vs. NCBI nr
Match: XP_011659262.1 (PREDICTED: uncharacterized protein LOC101216585 [Cucumis sativus] >XP_016901085.1 PREDICTED: uncharacterized protein LOC107991169 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MGTD LL P +GPPIKRRAGLR KQAGRGSYRGS
Sbjct: 1   MGTDRLLLPTVGPPIKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. NCBI nr
Match: XP_012442675.1 (PREDICTED: uncharacterized protein LOC105767649 [Gossypium raimondii] >XP_016724995.1 PREDICTED: uncharacterized protein LOC107936745 [Gossypium hirsutum] >XP_017611053.1 PREDICTED: uncharacterized protein LOC108456847 [Gossypium arboreum])

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MGTD LL P +GPPIK RAGLR KQAGRGSYRGS
Sbjct: 1   MGTDSLLLPTVGPPIKPRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. NCBI nr
Match: XP_017230213.1 (PREDICTED: uncharacterized protein LOC108204991 [Daucus carota subsp. sativus])

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MG D LL P +GPPIKRRAGLR KQAGRGSYRGS
Sbjct: 1   MGMDGLLLPTVGPPIKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. NCBI nr
Match: XP_007162530.1 (hypothetical protein PHAVU_001G159700g [Phaseolus vulgaris] >XP_017442968.1 PREDICTED: uncharacterized protein LOC108347990 [Vigna angularis] >ESW34524.1 hypothetical protein PHAVU_001G159700g [Phaseolus vulgaris] >KRH67359.1 hypothetical protein GLYMA_03G161900 [Glycine max])

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MG D L+ P +GPP+KRRAGLR KQAGRGSYRGS
Sbjct: 1   MGADRLILPTVGPPLKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. NCBI nr
Match: XP_008235704.1 (PREDICTED: uncharacterized protein LOC103334502 [Prunus mume])

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MGTD LL   +GPPIKRRAGLR KQAGRGSYRGS
Sbjct: 1   MGTDRLLLAEVGPPIKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. TAIR10
Match: AT1G06149.1 (conserved peptide upstream open reading frame 8)

HSP 1 Score: 43.5 bits (101), Expect = 8.9e-05
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MGT       +GPPI  RAGLR +QAGRGSYRGS
Sbjct: 1   MGTRQYSLGEVGPPINPRAGLRREQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. TrEMBL
Match: tr|A0A1S4DZE0|A0A1S4DZE0_CUCME (uncharacterized protein LOC107991169 OS=Cucumis melo OX=3656 GN=LOC107991169 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MGTD LL P +GPPIKRRAGLR KQAGRGSYRGS
Sbjct: 1   MGTDRLLLPTVGPPIKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. TrEMBL
Match: tr|A0A1U8MDZ2|A0A1U8MDZ2_GOSHI (uncharacterized protein LOC107936745 OS=Gossypium hirsutum OX=3635 GN=LOC107936745 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-05
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MGTD LL P +GPPIK RAGLR KQAGRGSYRGS
Sbjct: 1   MGTDSLLLPTVGPPIKPRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. TrEMBL
Match: tr|A0A0R0KVC3|A0A0R0KVC3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G161900 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MG D L+ P +GPP+KRRAGLR KQAGRGSYRGS
Sbjct: 1   MGADRLILPTVGPPLKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. TrEMBL
Match: tr|A0A1S3TQB3|A0A1S3TQB3_VIGRR (uncharacterized protein LOC106757708 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757708 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MG D L+ P +GPP+KRRAGLR KQAGRGSYRGS
Sbjct: 1   MGADRLILPTVGPPLKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of Carg07293 vs. TrEMBL
Match: tr|V7CWL9|V7CWL9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G159700g PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 68  MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 102
           MG D L+ P +GPP+KRRAGLR KQAGRGSYRGS
Sbjct: 1   MGADRLILPTVGPPLKRRAGLRRKQAGRGSYRGS 34

The following BLAST results are available for this feature:

BLAST of Carg07293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659262.1	3.9e-06	85.29	PREDICTED: uncharacterized protein LOC101216585 [Cucumis sativus] >XP_016901085....	[more]
XP_012442675.1	1.9e-05	82.35	PREDICTED: uncharacterized protein LOC105767649 [Gossypium raimondii] >XP_016724...	[more]
XP_017230213.1	1.9e-05	82.35	PREDICTED: uncharacterized protein LOC108204991 [Daucus carota subsp. sativus]	[more]
XP_007162530.1	4.3e-05	76.47	hypothetical protein PHAVU_001G159700g [Phaseolus vulgaris] >XP_017442968.1 PRED...	[more]
XP_008235704.1	4.3e-05	82.35	PREDICTED: uncharacterized protein LOC103334502 [Prunus mume]	[more]

BLAST of Carg07293 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06149.1	8.9e-05	64.71	conserved peptide upstream open reading frame 8	[more]

BLAST of Carg07293 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07293 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZE0\|A0A1S4DZE0_CUCME	2.6e-06	85.29	uncharacterized protein LOC107991169 OS=Cucumis melo OX=3656 GN=LOC107991169 PE=...	[more]
tr\|A0A1U8MDZ2\|A0A1U8MDZ2_GOSHI	1.3e-05	82.35	uncharacterized protein LOC107936745 OS=Gossypium hirsutum OX=3635 GN=LOC1079367...	[more]
tr\|A0A0R0KVC3\|A0A0R0KVC3_SOYBN	2.8e-05	76.47	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G161900 PE=4 SV=1	[more]
tr\|A0A1S3TQB3\|A0A1S3TQB3_VIGRR	2.8e-05	76.47	uncharacterized protein LOC106757708 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
tr\|V7CWL9\|V7CWL9_PHAVU	2.8e-05	76.47	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G159700g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07293-RA	Carg07293-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07293	CmaCh17G012220	Cucurbita maxima (Rimu)	carcmaB0142
Carg07293	CmoCh17G011990	Cucurbita moschata (Rifu)	carcmoB0152

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07293	Watermelon (97103) v2	carwmbB0117
Carg07293	Wax gourd	carwgoB0131
Carg07293	Cucumber (Gy14) v2	carcgybB0120
Carg07293	Cucumber (Gy14) v1	carcgyB0136
Carg07293	Cucurbita maxima (Rimu)	carcmaB0148
Carg07293	Cucurbita moschata (Rifu)	carcmoB0157
Carg07293	Cucurbita pepo (Zucchini)	carcpeB0158
Carg07293	Cucurbita pepo (Zucchini)	carcpeB0161
Carg07293	Wild cucumber (PI 183967)	carcpiB0125
Carg07293	Cucumber (Chinese Long) v2	carcuB0120
Carg07293	Cucumber (Chinese Long) v3	carcucB0129
Carg07293	Bottle gourd (USVL1VR-Ls)	carlsiB098
Carg07293	Watermelon (Charleston Gray)	carwcgB0108
Carg07293	Watermelon (97103) v1	carwmB0106