CmaCh17G012220.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012220.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	conserved peptide upstream open reading frame 8
Location	Cma_Chr17 : 8426179 .. 8426742 (+)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAAATGTAGATCAGGGCGTTGAATTTCTCTGTGATTCTCGTCGTTTCTTTTGGTCAAAAAGCTTCAAATCTGTTTCGTTCTGTAAAGGGGCTTGTTCAAATCCAACCCCCTTTCTCTTTTGACGTTTTTTGGTTCTTGGGTTTTGGTTTTCGGTTTTCATTTGAGCCTTGAAATCTCCCTTTTCTTGTCTGGTTGTTCTATTCTTGTTTTTATGACGATTTCATAAGTTCATCCATGTCGTCCGACATAATTTAGGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGAAAAAGAGCTCTTACTGTTGCTGTTCTTCTTCTTAATGGATTGTTTTACTTATACCTACTCTAATGGAGTCCACTGCGTTAGAAGCTATGCGATATGTGCTGAAATTTGCTGATACCATCTTATTTGTGTTGAATTGTTGAGTTCAGGGGGATGGGAACGGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

mRNA sequence

ATGCAAGAAAATGTAGATCAGGGCGTTGAATTTCTCTGTGATTCTCGTCGTTTCTTTTGGTCAAAAAGCTTCAAATCTGTTTCGTTCTGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGAAAAAGAGCTCTTACTGTTGCTGTTCTTCTTCTTAATGGATTGGGGATGGGAACGGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

Coding sequence (CDS)

ATGCAAGAAAATGTAGATCAGGGCGTTGAATTTCTCTGTGATTCTCGTCGTTTCTTTTGGTCAAAAAGCTTCAAATCTGTTTCGTTCTGGTTTAATCTTGCCCTTGTTCGAGTGATCTGTGGTGGGTCTGCGAGAAAAAGAGCTCTTACTGTTGCTGTTCTTCTTCTTAATGGATTGGGGATGGGAACGGATCCTCTGCTATCACCAGCAATTGGACCGCCAATAAAACGGCGAGCAGGATTGAGGATAAAGCAGGCTGGTAGAGGCTCATACAGGGGAAGCTAG

Protein sequence

MQENVDQGVEFLCDSRRFFWSKSFKSVSFWFNLALVRVICGGSARKRALTVAVLLLNGLGMGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS

Homology

[Close]

BLAST of CmaCh17G012220.1 vs. NCBI nr
Match: gi|1009147569|ref|XP_015891481.1| (PREDICTED: uncharacterized protein LOC107425927 [Ziziphus jujuba])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 61 MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 95
          MGT+ LL P +GPPIKRRAGLRIKQAGRGSYRGS
Sbjct: 1  MGTNRLLLPTLGPPIKRRAGLRIKQAGRGSYRGS 34

[Close]

BLAST of CmaCh17G012220.1 vs. NCBI nr
Match: gi|778727453|ref|XP_011659262.1| (PREDICTED: uncharacterized protein LOC101216585 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 61 MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 95
          MGTD LL P +GPPIKRRAGLR KQAGRGSYRGS
Sbjct: 1  MGTDRLLLPTVGPPIKRRAGLRRKQAGRGSYRGS 34

[Close]

BLAST of CmaCh17G012220.1 vs. NCBI nr
Match: gi|823128414|ref|XP_012442675.1| (PREDICTED: uncharacterized protein LOC105767649 [Gossypium raimondii])

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-06
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 61 MGTDPLLSPAIGPPIKRRAGLRIKQAGRGSYRGS 95
          MGTD LL P +GPPIK RAGLR KQAGRGSYRGS
Sbjct: 1  MGTDSLLLPTVGPPIKPRAGLRRKQAGRGSYRGS 34

The following BLAST results are available for this feature:

BLAST of CmaCh17G012220.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012220.1 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012220.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009147569\|ref\|XP_015891481.1\|	1.1e-06	85.29	PREDICTED: uncharacterized protein LOC107425927 [Ziziphus jujuba]	[more]
gi\|778727453\|ref\|XP_011659262.1\|	1.4e-06	85.29	PREDICTED: uncharacterized protein LOC101216585 [Cucumis sativus]	[more]
gi\|823128414\|ref\|XP_012442675.1\|	7.1e-06	82.35	PREDICTED: uncharacterized protein LOC105767649 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh17G012220	CmaCh17G012220	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh17G012220.1	CmaCh17G012220.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G012220.1.exon.1	CmaCh17G012220.1.exon.1	exon
CmaCh17G012220.1.exon.2	CmaCh17G012220.1.exon.2	exon
CmaCh17G012220.1.exon.3	CmaCh17G012220.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G012220.1.CDS.1	CmaCh17G012220.1.CDS.1	CDS
CmaCh17G012220.1.CDS.2	CmaCh17G012220.1.CDS.2	CDS
CmaCh17G012220.1.CDS.3	CmaCh17G012220.1.CDS.3	CDS