CmaCh17G008580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G008580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	EPIDERMAL PATTERNING FACTOR-like protein 8
Location	Cma_Chr17 : 6630769 .. 6631144 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCAGCTGTTCCTCCCAAGTCAGGTATTGATGCATACAATCTCACATTTCTGGTTTTGTTATTCACTTCTAAAGACCCTTTTGTTCTTGAGTTCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGCCCGCCGGGATGTTTTCATAAGTGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGATAGCTATTATCTTCTCTCGTGGAAATGCCAATGTGGGAATAAGATCTATCAACCCTAG

mRNA sequence

ATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCAGCTGTTCCTCCCAAGTCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGCCCGCCGGGATGTTTTCATAAGTGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGATAGCTATTATCTTCTCTCGTGGAAATGCCAATGTGGGAATAAGATCTATCAACCCTAG

Coding sequence (CDS)

ATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCAGCTGTTCCTCCCAAGTCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGCCCGCCGGGATGTTTTCATAAGTGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGATAGCTATTATCTTCTCTCGTGGAAATGCCAATGTGGGAATAAGATCTATCAACCCTAG

Protein sequence

MAMPFLKLAIVLAVFFFFFSAVPPKSVGLVLEANMKIGSRPPGCFHKCMSCRPCMAAAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP

Homology

[Close]

BLAST of CmaCh17G008580 vs. TrEMBL
Match: A0A0A0K6C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432570 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-29
Identity = 76/124 (61.29%), Postives = 85/124 (68.55%), Query Frame = 1


Query: 1   MAMPF-----LKLAIVLAVFFFFFSAVPPKSVGLVL-------------------EANMK 60
           MA+P      LKLA+ LA FF F   +PP SVGLVL                   E  M 
Sbjct: 1   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSELGKAENDEMKNLEEKMV 60

Query: 61  IGSRPPGCFHKCMSCRPCMAAAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNK 101
           IGSRPPGC +KCM+CRPCMA AAVVPVH+MKGKAF + +SSREEEDSYYLLSWKC+CGNK
Sbjct: 61  IGSRPPGCQNKCMNCRPCMA-AAVVPVHRMKGKAFQSFSSSREEEDSYYLLSWKCRCGNK 120

[Close]

BLAST of CmaCh17G008580 vs. TrEMBL
Match: K7L7X4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G212100 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-18
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1


Query: 6   LKLAIVLAVFFFFFSAVPPKSVGLVL---------EANMKIGSRPPGCFHKCMSCRPCMA 65
           LKL I + +F FF S +P KS G V+         E+ M IGS+PP C +KC SCRPCMA
Sbjct: 13  LKLPITV-LFIFFLSFLPSKSGGSVMVESTREGLEESKMVIGSKPPACVNKCKSCRPCMA 72

Query: 66  AAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP 101
              VVP H+ + K F    SSR ++D+YYLLSWKC+CGNK++QP
Sbjct: 73  TL-VVPNHQKRKKGFKV--SSRGDDDTYYLLSWKCKCGNKLFQP 112

[Close]

BLAST of CmaCh17G008580 vs. TrEMBL
Match: A0A0B2RU85_GLYSO (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Glycine soja GN=glysoja_007023 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-18
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1


Query: 6   LKLAIVLAVFFFFFSAVPPKSVGLVL---------EANMKIGSRPPGCFHKCMSCRPCMA 65
           LKL I + +F FF S +P KS G V+         E+ M IGS+PP C +KC SCRPCMA
Sbjct: 13  LKLPITV-LFIFFLSFLPSKSGGSVMVESTREGLEESKMVIGSKPPACVNKCKSCRPCMA 72

Query: 66  AAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP 101
              VVP H+ + K F    SSR ++D+YYLLSWKC+CGNK++QP
Sbjct: 73  TL-VVPNHQKRKKGFKV--SSRGDDDTYYLLSWKCKCGNKLFQP 112

[Close]

BLAST of CmaCh17G008580 vs. TrEMBL
Match: A0A022Q7H2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016458mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.1e-17
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 1


Query: 5   FLKLAIVLAVFFFFFSAVPPKS-VGLVLEANMK-----IGSRPPGCFHKCMSCRPCMAAA 64
           +LKLA++ ++ FF  + +PPK+  G + E+  +     +GSRPPGC +KCMSCRPC  A 
Sbjct: 10  YLKLAVI-SICFFSLTLLPPKTDSGGIKESTAENEQTILGSRPPGCVNKCMSCRPC-EAT 69

Query: 65  AVVPVHKM------------KGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP 101
            V+P HKM            KG+     +S RE++D+YYLLSWKC+CGNK Y P
Sbjct: 70  LVIPTHKMVISSSSRSSTRIKGRGSFVKSSRREDDDTYYLLSWKCRCGNKYYHP 121

[Close]

BLAST of CmaCh17G008580 vs. TrEMBL
Match: A0A0L9UNY5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g220500 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.1e-17
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 7   KLAIVLAVFFFFFSAVPPKSVGLVLEA---NMKIGSRPPGCFHKCMSCRPCMAAAAVVPV 66
           K+A+ LA FFF F  + P+S G V+     ++ IGS+PP C +KCM+CRPC  A  VVP 
Sbjct: 10  KVALTLA-FFFIFIVLLPQSGGSVMSDRRNSLMIGSKPPACGNKCMNCRPC-TATVVVPS 69

Query: 67  HKMKGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP 101
           HK KG     ++SS  ++DSYYLLSWKC+CG+K +QP
Sbjct: 70  HKTKG----FMSSSHRQDDSYYLLSWKCRCGDKFFQP 100

[Close]

BLAST of CmaCh17G008580 vs. TAIR10
Match: AT2G30370.1 (AT2G30370.1 allergen-related)

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 24/64 (37.50%), Postives = 29/64 (45.31%), Query Frame = 1


Query: 37  IGSRPPGCFHKCMSCRPCMAAAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNK 96
           +GS PP C  KC  C PC      VP     G    A          YY  +W+C+CGNK
Sbjct: 180 LGSSPPRCSSKCGRCTPCKPVHVPVP----PGTPVTA---------EYYPEAWRCKCGNK 230

Query: 97  IYQP 101
           +Y P
Sbjct: 240 LYMP 230

[Close]

BLAST of CmaCh17G008580 vs. NCBI nr
Match: gi|659122385|ref|XP_008461115.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 6.3e-29
Identity = 76/124 (61.29%), Postives = 85/124 (68.55%), Query Frame = 1


Query: 1   MAMPF-----LKLAIVLAVFFFFFSAVPPKSVGLVL-------------------EANMK 60
           MA+P      LKLA+ LA FF F   +PP SVGLVL                   +  M 
Sbjct: 3   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSEGKADNDEMKFLEDQKMV 62

Query: 61  IGSRPPGCFHKCMSCRPCMAAAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNK 101
           IGSRPPGC +KCM+CRPCMA AAVVPVH+MKGKAF + +SSREEEDSYYLLSWKCQCGNK
Sbjct: 63  IGSRPPGCQNKCMNCRPCMA-AAVVPVHRMKGKAFQSFSSSREEEDSYYLLSWKCQCGNK 122

[Close]

BLAST of CmaCh17G008580 vs. NCBI nr
Match: gi|778729077|ref|XP_011659526.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 8.3e-29
Identity = 76/124 (61.29%), Postives = 85/124 (68.55%), Query Frame = 1


Query: 1   MAMPF-----LKLAIVLAVFFFFFSAVPPKSVGLVL-------------------EANMK 60
           MA+P      LKLA+ LA FF F   +PP SVGLVL                   E  M 
Sbjct: 1   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSELGKAENDEMKNLEEKMV 60

Query: 61  IGSRPPGCFHKCMSCRPCMAAAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNK 101
           IGSRPPGC +KCM+CRPCMA AAVVPVH+MKGKAF + +SSREEEDSYYLLSWKC+CGNK
Sbjct: 61  IGSRPPGCQNKCMNCRPCMA-AAVVPVHRMKGKAFQSFSSSREEEDSYYLLSWKCRCGNK 120

[Close]

BLAST of CmaCh17G008580 vs. NCBI nr
Match: gi|571472514|ref|XP_006585629.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 8 [Glycine max])

HSP 1 Score: 99.4 bits (246), Expect = 3.9e-18
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1


Query: 6   LKLAIVLAVFFFFFSAVPPKSVGLVL---------EANMKIGSRPPGCFHKCMSCRPCMA 65
           LKL I + +F FF S +P KS G V+         E+ M IGS+PP C +KC SCRPCMA
Sbjct: 13  LKLPITV-LFIFFLSFLPSKSGGSVMVESTREGLEESKMVIGSKPPACVNKCKSCRPCMA 72

Query: 66  AAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP 101
              VVP H+ + K F    SSR ++D+YYLLSWKC+CGNK++QP
Sbjct: 73  TL-VVPNHQKRKKGFKV--SSRGDDDTYYLLSWKCKCGNKLFQP 112

[Close]

BLAST of CmaCh17G008580 vs. NCBI nr
Match: gi|694378365|ref|XP_009365424.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 8 [Pyrus x bretschneideri])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1


Query: 6   LKLAIVLAVFFFFFSAVPPKSVG-------------LVLEANMKIGSRPPGCFHKCMSCR 65
           LK+AI+     F  + + PKSV              L L++ M +GSRPPGC +KC++CR
Sbjct: 13  LKVAIITVASIFLLTTLLPKSVDSVQSSHNNESSDDLFLQSKMVLGSRPPGCQNKCLNCR 72

Query: 66  PCMAAAAVVPVHKMKGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP 101
           PC+A   V+PVHK K  +   ++S  EE DSYYLLSWKC+CGNK++QP
Sbjct: 73  PCIATL-VIPVHKTKRLS---LSSHGEEGDSYYLLSWKCRCGNKLFQP 116

[Close]

BLAST of CmaCh17G008580 vs. NCBI nr
Match: gi|848906925|ref|XP_012852671.1| (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Erythranthe guttata])

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-17
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 5   FLKLAIVLAVFFFFFSAVPPKSVGL---VLEANMKI-GSRPPGCFHKCMSCRPCMAAAAV 64
           +LKLA++ ++ FF  + +PPK+ G+     E    I GSRPPGC +KCMSCRPC  A  V
Sbjct: 10  YLKLAVI-SICFFSLTLLPPKTGGIKESTAENEQTILGSRPPGCVNKCMSCRPC-EATLV 69

Query: 65  VPVHKM------------KGKAFNAIASSREEEDSYYLLSWKCQCGNKIYQP 101
           +P HKM            KG+     +S RE++D+YYLLSWKC+CGNK Y P
Sbjct: 70  IPTHKMVISSSSRSSTRIKGRGSFVKSSRREDDDTYYLLSWKCRCGNKYYHP 119

The following BLAST results are available for this feature:

BLAST of CmaCh17G008580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G008580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6C2_CUCSA	5.8e-29	61.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432570 PE=4 SV=1	[more]
K7L7X4_SOYBN	2.7e-18	51.92	Uncharacterized protein OS=Glycine max GN=GLYMA_08G212100 PE=4 SV=1	[more]
A0A0B2RU85_GLYSO	2.7e-18	51.92	EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Glycine soja GN=glysoja_007023 PE=...	[more]
A0A022Q7H2_ERYGU	5.1e-17	45.61	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016458mg PE=4 SV=1	[more]
A0A0L9UNY5_PHAAN	5.1e-17	51.55	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g220500 PE=4 SV=1	[more]

BLAST of CmaCh17G008580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30370.1	6.1e-06	37.50	allergen-related	[more]

BLAST of CmaCh17G008580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122385\|ref\|XP_008461115.1\|	6.3e-29	61.29	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo]	[more]
gi\|778729077\|ref\|XP_011659526.1\|	8.3e-29	61.29	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis sativus]	[more]
gi\|571472514\|ref\|XP_006585629.1\|	3.9e-18	51.92	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 8 [Glycine max]	[more]
gi\|694378365\|ref\|XP_009365424.1\|	2.5e-17	47.22	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 8 [Pyrus x bretschneideri]	[more]
gi\|848906925\|ref\|XP_012852671.1\|	3.3e-17	47.32	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Erythranthe gu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010052	guard cell differentiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G008580.1	CmaCh17G008580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33109	FAMILY NOT NAMED	coord: 6..100 score: 9.5
None	No IPR available	PANTHER	PTHR33109:SF16	SUBFAMILY NOT NAMED	coord: 6..100 score: 9.5
None	No IPR available	PFAM	PF17181	EPF	coord: 36..100 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G008580	Cla015369	Watermelon (97103) v1	cmawmB328
CmaCh17G008580	Cla012715	Watermelon (97103) v1	cmawmB339
CmaCh17G008580	Csa7G432570	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G008580	MELO3C017882	Melon (DHL92) v3.5.1	cmameB348
CmaCh17G008580	ClCG09G002880	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G008580	ClCG07G012630	Watermelon (Charleston Gray)	cmawcgB332
CmaCh17G008580	CSPI07G20610	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G008580	CmoCh17G008290	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G008580	CmoCh01G001490	Cucurbita moschata (Rifu)	cmacmoB355
CmaCh17G008580	CmoCh08G006080	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G008580	Lsi02G027160	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G008580	Cp4.1LG18g04930	Cucurbita pepo (Zucchini)	cmacpeB396
CmaCh17G008580	Cp4.1LG17g08910	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G008580	Cp4.1LG02g14740	Cucurbita pepo (Zucchini)	cmacpeB399
CmaCh17G008580	MELO3C017882.2	Melon (DHL92) v3.6.1	cmamedB402
CmaCh17G008580	MELO3C029250.2	Melon (DHL92) v3.6.1	cmamedB379
CmaCh17G008580	CsaV3_4G001570	Cucumber (Chinese Long) v3	cmacucB0436
CmaCh17G008580	CsaV3_7G032450	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G008580	Cla97C07G139430	Watermelon (97103) v2	cmawmbB382
CmaCh17G008580	Cla97C09G165030	Watermelon (97103) v2	cmawmbB387
CmaCh17G008580	Bhi09G000023	Wax gourd	cmawgoB0492
CmaCh17G008580	CsGy7G018890	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G008580	CsGy4G001440	Cucumber (Gy14) v2	cgybcmaB502
CmaCh17G008580	Carg09583	Silver-seed gourd	carcmaB1419
CmaCh17G008580	Carg04230	Silver-seed gourd	carcmaB0277
CmaCh17G008580	Carg23142	Silver-seed gourd	carcmaB0192

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G008580	CmaCh10G005450	Cucurbita maxima (Rimu)	cmacmaB098
CmaCh17G008580	CmaCh01G001410	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh17G008580	CmaCh08G006210	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G008580	Cucurbita maxima (Rimu)	cmacmaB175
CmaCh17G008580	Cucurbita maxima (Rimu)	cmacmaB368
CmaCh17G008580	Cucumber (Gy14) v1	cgycmaB0237
CmaCh17G008580	Cucurbita moschata (Rifu)	cmacmoB361
CmaCh17G008580	Melon (DHL92) v3.5.1	cmameB326
CmaCh17G008580	Cucurbita pepo (Zucchini)	cmacpeB369
CmaCh17G008580	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G008580	Bottle gourd (USVL1VR-Ls)	cmalsiB343
CmaCh17G008580	Cucumber (Gy14) v2	cgybcmaB196
CmaCh17G008580	Silver-seed gourd	carcmaB0799
CmaCh17G008580	Cucumber (Chinese Long) v3	cmacucB0423
CmaCh17G008580	Watermelon (97103) v2	cmawmbB362