Carg09583 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09583
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	EPIDERMAL PATTERNING FACTOR-like protein
Location	Cucurbita_argyrosperma_scaffold_029 : 935362 .. 936661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTCAGAGCAACAGTTCCCCAAAACCAAGCCAAGTAAGTGAATGCTCCCTTTTTGGCATCACCCTTCCTCTCTTCTATTTATGTCTCTTCCGAACCCGACATGTCTTAACCTTGTCCACTGAAGGCTCAACCCTTTCATAATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCACCTGTTCCTCCTAAGTCAGGTAATGATGCATTCAATCTCACATCTCTGGTTCTGTTATTCACTTCTAAGGACCCTTTTGTTCTTGCGTCCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGGCCGCCGGGATGTGTGAATAAATGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGCGGTGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGGTAGCTATTATCTTCTCTCGTGGAAATGCCAATGTGGGAATAAGATCTATCAACCCTAGCCTACCAATGCGAGTTAAACTTGAGGAGAGGCTCATAAGTGAAAACTTAAACTTGAGGAGAGGCTCGGAAAAGTCCAAACAAGACAATATCTGTTAGTTGTGGACTTGGGACTGTTACAACTTACAAGTTTTATCCGTCTCGTCTTTTAATCAAAAGTATGTTTAAATTATTTGAGGTATCAAAAAGTAGTTCAAGTATGTAAATTTTTTATACCGATTTTCTTTTATATTTATTTAATGATAAAATTTTATATAGTTCGATAGATAAAACACTGATTATTATTTTAAACTTCGATGCATCTGACCTTATGGTGTTGAACTCAAAAGAAACTATTATTATTTATATATATATTTTAATTTTAATATATTAAATTTGCATTATTTTGATCAATTTGGGCCGAGTTAGCCCATACAATCCAGCAAGGCGACTTACTGGATTTGGGCCGGCCCATGTGGCTTAAGCCCTTAATGGAAAGGAATAAGTAATAAGTGAACAGAGAAATGGAATCGGAGTTGATGCTTCCATGCTCGGCTAATGGCAACGTTCTCTAGCTCTCTGCAACATTCTTCACAGTTCGTTCCCGCCTTTTCTCTCTGTTCATGCTTCCATACTCGGCTGGAAATCGGCTTCTCTTCGCTTCCTTGAGCTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCTGTTCGTCTAATAGGTTCCTTTTCGTTGCTGATGTTATCTCCATTTTATTTGCTTAA

mRNA sequence

ATGAAGGTCAGAGCAACAGTTCCCCAAAACCAAGCCAAGCTCAACCCTTTCATAATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCACCTGTTCCTCCTAAGTCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGGCCGCCGGGATGTGTGAATAAATGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGCGGTGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGCTCTCTGCAACATTCTTCACAGTTCGTTCCCGCCTTTTCTCTCTGTTCATGCTTCCATACTCGGCTGGAAATCGGCTTCTCTTCGCTTCCTTGAGCTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCTGTTCGTCTAATAGGTTCCTTTTCGTTGCTGATGTTATCTCCATTTTATTTGCTTAA

Coding sequence (CDS)

ATGAAGGTCAGAGCAACAGTTCCCCAAAACCAAGCCAAGCTCAACCCTTTCATAATGGCTATGCCATTCCTCAAACTGGCTATTGTTCTTGCTGTGTTCTTCTTCTTCTTCTCACCTGTTCCTCCTAAGTCAGTTGGGTTGGTTTTGGAGGCAAACATGAAGATTGGTTCACGGCCGCCGGGATGTGTGAATAAATGCATGAGTTGTAGGCCGTGCATGGCGGCGGCGGCGGCGGTGGTGGTGCCGGTGCATAAGATGAAGGGGAAGGCCTTCAATGCCATTGCTTCCTCTCGGGAGGAAGAGGCTCTCTGCAACATTCTTCACAGTTCGTTCCCGCCTTTTCTCTCTGTTCATGCTTCCATACTCGGCTGGAAATCGGCTTCTCTTCGCTTCCTTGAGCTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCTGTTCGTCTAATAGGTTCCTTTTCGTTGCTGATGTTATCTCCATTTTATTTGCTTAA

Protein sequence

MKVRATVPQNQAKLNPFIMAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEEALCNILHSSFPPFLSVHASILGWKSASLRFLELHPPCVAQQYGGHQTPIRLPRRICSSNRFLFVADVISILFA

Homology

[Close]

BLAST of Carg09583 vs. NCBI nr
Match: XP_022953925.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita moschata])

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-34
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 19  MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAA 78
           MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAA 
Sbjct: 1   MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAA- 60

Query: 79  VVVPVHKMKGKAFNAIASSREEE 102
            VVPVHKMKGKAFNAIASSREEE
Sbjct: 61  -VVPVHKMKGKAFNAIASSREEE 81

[Close]

BLAST of Carg09583 vs. NCBI nr
Match: XP_022991788.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita maxima])

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 19  MAMPFLKLAIVLAVFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAAAAA 78
           MAMPFLKLAIVLAVF    S VPPKSVGLVLEANMKIGSRPPGC +KCMSCRPCMAAAA 
Sbjct: 1   MAMPFLKLAIVLAVFXXXXSAVPPKSVGLVLEANMKIGSRPPGCFHKCMSCRPCMAAAA- 60

Query: 79  VVVPVHKMKGKAFNAIASSREEE 102
            VVPVHKMKGKAFNAIASSREEE
Sbjct: 61  -VVPVHKMKGKAFNAIASSREEE 81

[Close]

BLAST of Carg09583 vs. NCBI nr
Match: XP_023548448.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-23
Identity = 67/85 (78.82%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 19  MAMPFLKLAIVLA---VFFFFFSPVPPKSVGLVLEANMKIGSRPPGCVNKCMSCRPCMAA 78
           MAMPFLKL IVLA              KSVGL+LE NMKIGSRPPGCVNKCMSCRPCMAA
Sbjct: 1   MAMPFLKLPIVLAXXXXXXXXXXXXXXKSVGLILEENMKIGSRPPGCVNKCMSCRPCMAA 60

Query: 79  AAAVVVPVHKMKGKAFNAIASSREE 101
           AAA VVPVHKMKGKAFNAIASSREE
Sbjct: 61  AAA-VVPVHKMKGKAFNAIASSREE 84

[Close]

BLAST of Carg09583 vs. NCBI nr
Match: XP_011659526.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis sativus] >KGN45275.1 hypothetical protein Csa_7G432570 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 59/107 (55.14%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 19  MAMPF-----LKLAIVLAVFFFFFSPVPPKSVGLV-------------------LEANMK 78
           MA+P      LKLA+ LA FF F   +PP SVGLV                   LE  M 
Sbjct: 1   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSELGKAENDEMKNLEEKMV 60

Query: 79  IGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           IGSRPPGC NKCM+CRPCMAAA   VVPVH+MKGKAF + +SSREEE
Sbjct: 61  IGSRPPGCQNKCMNCRPCMAAA---VVPVHRMKGKAFQSFSSSREEE 101

[Close]

BLAST of Carg09583 vs. NCBI nr
Match: XP_008461115.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 19  MAMPF-----LKLAIVLAVFFFFFSPVPPKSVGLVL-------------------EANMK 78
           MA+P      LKLA+ LA FF F   +PP SVGLVL                   +  M 
Sbjct: 3   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSEGKADNDEMKFLEDQKMV 62

Query: 79  IGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           IGSRPPGC NKCM+CRPCMAAA   VVPVH+MKGKAF + +SSREEE
Sbjct: 63  IGSRPPGCQNKCMNCRPCMAAA---VVPVHRMKGKAFQSFSSSREEE 103

[Close]

BLAST of Carg09583 vs. TrEMBL
Match: tr|A0A0A0K6C2|A0A0A0K6C2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432570 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.1e-16
Identity = 59/107 (55.14%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 19  MAMPF-----LKLAIVLAVFFFFFSPVPPKSVGLV-------------------LEANMK 78
           MA+P      LKLA+ LA FF F   +PP SVGLV                   LE  M 
Sbjct: 1   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSELGKAENDEMKNLEEKMV 60

Query: 79  IGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           IGSRPPGC NKCM+CRPCMAAA   VVPVH+MKGKAF + +SSREEE
Sbjct: 61  IGSRPPGCQNKCMNCRPCMAAA---VVPVHRMKGKAFQSFSSSREEE 101

[Close]

BLAST of Carg09583 vs. TrEMBL
Match: tr|A0A1S3CDZ4|A0A1S3CDZ4_CUCME (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Cucumis melo OX=3656 GN=LOC103499797 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 19  MAMPF-----LKLAIVLAVFFFFFSPVPPKSVGLVL-------------------EANMK 78
           MA+P      LKLA+ LA FF F   +PP SVGLVL                   +  M 
Sbjct: 3   MALPISLSTSLKLALTLAAFFSF---LPPTSVGLVLSRSGRSEGKADNDEMKFLEDQKMV 62

Query: 79  IGSRPPGCVNKCMSCRPCMAAAAAVVVPVHKMKGKAFNAIASSREEE 102
           IGSRPPGC NKCM+CRPCMAAA   VVPVH+MKGKAF + +SSREEE
Sbjct: 63  IGSRPPGCQNKCMNCRPCMAAA---VVPVHRMKGKAFQSFSSSREEE 103

[Close]

BLAST of Carg09583 vs. TrEMBL
Match: tr|K7L7X4|K7L7X4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102659819 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 24  LKLAIVLAVFFFFFSPVPPKSVGLVL---------EANMKIGSRPPGCVNKCMSCRPCMA 83
           LKL I + +F FF S +P KS G V+         E+ M IGS+PP CVNKC SCRPCM 
Sbjct: 13  LKLPITV-LFIFFLSFLPSKSGGSVMVESTREGLEESKMVIGSKPPACVNKCKSCRPCM- 72

Query: 84  AAAAVVVPVHKMKGKAFNAIASSREEE 102
             A +VVP H+ + K F    SSR ++
Sbjct: 73  --ATLVVPNHQKRKKGFK--VSSRGDD 93

[Close]

BLAST of Carg09583 vs. TrEMBL
Match: tr|A0A0L9UNY5|A0A0L9UNY5_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g220500 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.9e-06
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 25 KLAIVLAVFFFFFSPVPPKSVGLVL---EANMKIGSRPPGCVNKCMSCRPCMAAAAAVVV 84
          K+A+ LA FFF F  + P+S G V+     ++ IGS+PP C NKCM+CRPC    A VVV
Sbjct: 10 KVALTLA-FFFIFIVLLPQSGGSVMSDRRNSLMIGSKPPACGNKCMNCRPC---TATVVV 69

Query: 85 PVHKMKG 89
          P HK KG
Sbjct: 70 PSHKTKG 72

[Close]

BLAST of Carg09583 vs. TrEMBL
Match: tr|V7AQB7|V7AQB7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G155400g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.9e-06
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 24  LKLAIVLAVFFFFFSPVPPKSVGLVL--------EANMKIGSRPPGCVNKCMSCRPCMAA 83
           LKL I + +F FFFS +P KS G ++        ++   IGS+PP C+NKC SCRPCM  
Sbjct: 13  LKLPITV-LFIFFFSLLPSKSGGSLMLDTKKGLEQSKTVIGSKPPACMNKCKSCRPCM-- 72

Query: 84  AAAVVVPVHKMKGKAFNAIASSREE 101
            A +VVP H+ + K F   +   ++
Sbjct: 73  -ATLVVPNHQKRKKGFKVFSRGDDD 93

The following BLAST results are available for this feature:

BLAST of Carg09583 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953925.1	2.0e-34	97.59	EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita moschata]	[more]
XP_022991788.1	4.3e-29	89.16	EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita maxima]	[more]
XP_023548448.1	6.0e-23	78.82	EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_011659526.1	1.2e-15	55.14	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis sativus] >KGN4527...	[more]
XP_008461115.1	2.7e-15	54.21	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo]	[more]

BLAST of Carg09583 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg09583 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09583 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6C2\|A0A0A0K6C2_CUCSA	8.1e-16	55.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432570 PE=4 SV=1	[more]
tr\|A0A1S3CDZ4\|A0A1S3CDZ4_CUCME	1.8e-15	54.21	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Cucumis melo OX=3656 GN=LOC1034997...	[more]
tr\|K7L7X4\|K7L7X4_SOYBN	1.2e-06	47.13	Uncharacterized protein OS=Glycine max OX=3847 GN=102659819 PE=4 SV=1	[more]
tr\|A0A0L9UNY5\|A0A0L9UNY5_PHAAN	9.9e-06	52.24	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g220500 PE...	[more]
tr\|V7AQB7\|V7AQB7_PHAVU	9.9e-06	41.18	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G155400g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09583-RA	Carg09583-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 54..85 e-value: 6.2E-9 score: 35.6
None	No IPR available	PANTHER	PTHR33109:SF16	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 8	coord: 28..91
None	No IPR available	PANTHER	PTHR33109	FAMILY NOT NAMED	coord: 28..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09583	Cla015369	Watermelon (97103) v1	carwmB1028
Carg09583	Csa7G432570	Cucumber (Chinese Long) v2	carcuB1041
Carg09583	ClCG09G002880	Watermelon (Charleston Gray)	carwcgB1001
Carg09583	CSPI07G20610	Wild cucumber (PI 183967)	carcpiB1064
Carg09583	CmaCh17G008580	Cucurbita maxima (Rimu)	carcmaB1419
Carg09583	CmoCh17G008290	Cucurbita moschata (Rifu)	carcmoB1376
Carg09583	Lsi02G027160	Bottle gourd (USVL1VR-Ls)	carlsiB937
Carg09583	CsGy7G018890	Cucumber (Gy14) v2	carcgybB1011
Carg09583	MELO3C029250.2	Melon (DHL92) v3.6.1	carmedB1008
Carg09583	CsaV3_7G032450	Cucumber (Chinese Long) v3	carcucB1074
Carg09583	Cla97C09G165030	Watermelon (97103) v2	carwmbB1089
Carg09583	Bhi09G000023	Wax gourd	carwgoB1204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09583	Silver-seed gourd	carcarB047
Carg09583	Silver-seed gourd	carcarB158
Carg09583	Silver-seed gourd	carcarB170
Carg09583	Silver-seed gourd	carcarB240
Carg09583	Silver-seed gourd	carcarB530
Carg09583	Cucumber (Gy14) v1	carcgyB1144
Carg09583	Cucumber (Gy14) v1	carcgyB1145
Carg09583	Cucurbita maxima (Rimu)	carcmaB1418
Carg09583	Cucurbita maxima (Rimu)	carcmaB1420
Carg09583	Cucurbita maxima (Rimu)	carcmaB1421
Carg09583	Cucurbita maxima (Rimu)	carcmaB1425
Carg09583	Cucurbita moschata (Rifu)	carcmoB1372
Carg09583	Cucurbita moschata (Rifu)	carcmoB1375
Carg09583	Cucurbita moschata (Rifu)	carcmoB1377
Carg09583	Cucurbita moschata (Rifu)	carcmoB1379
Carg09583	Cucurbita pepo (Zucchini)	carcpeB1423
Carg09583	Cucurbita pepo (Zucchini)	carcpeB1424
Carg09583	Cucurbita pepo (Zucchini)	carcpeB1425
Carg09583	Cucurbita pepo (Zucchini)	carcpeB1428
Carg09583	Cucurbita pepo (Zucchini)	carcpeB1429
Carg09583	Wild cucumber (PI 183967)	carcpiB1060
Carg09583	Cucumber (Chinese Long) v2	carcuB1036
Carg09583	Cucumber (Chinese Long) v3	carcucB1070
Carg09583	Bottle gourd (USVL1VR-Ls)	carlsiB939
Carg09583	Melon (DHL92) v3.5.1	carmeB0996
Carg09583	Watermelon (Charleston Gray)	carwcgB1004
Carg09583	Watermelon (97103) v1	carwmB1031
Carg09583	Watermelon (97103) v2	carwmbB1088