CmaCh17G008450 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G008450
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionZinc finger CCCH domain-containing protein 39
LocationCma_Chr17 : 6584375 .. 6586213 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCTACTTATCGTTTTAACGAAATTACTCCTCCGGTCCCAGAGGCTCGTGGCGATTCGTCGGCATTGCCTCCTCCACATTCGGATAGTGGACTCCAACAGCGTACTATGCCTTCAAAATCTCGGATTCCACCATCAAACAATCGGAACATTGGGTATGACCATGAGTTGGGGTGTATGTCTACACCTGCTTTGAATGATACTCATAGAAGGTTACCTTCCTTGCGAGGAATTGAATTTCATGAAGGTCAATTGTCAGGGCGTTCGAATGAAATGAAAGCATGCAGACAGTTCCAACGCCGGAGGAAATGTGCATATGGGGATCAGTGTCGTTACCTTCATGAAATTCCTGAGAAAACTAGAGATTTTGGGTCCACCACCCAGAATTACGAGGTTAGAATAGTAGATTCTGGTCATGTTATGAATCGAAGACGTGGGTTGGATCAATTGGAAGAAGTCAGATCAAAAGTACAAACAGAGATTGTTGTCCGCGGTGAGATTCCAAAGCCTGTAAGATGCAAAACAAGGCTCTGTTACCCCTTGCAGAAGACTGGTAGCTGCCCATATGGGGCGGTTTGTCGCATTGCCCATGAAGAAGCAGGTATTTTGAGATTCCTCTTTCCATTCCATTACCATGCTATTGTTGAGAATTGTAGTAGATATTAACATGGTATCAGAGCTATGTTTTTAATTTAACCATGTCAATAAAACTCTCCAATGTCAAAAAAAGACGTTGTAAGTCTCGAAGGTGTAGTAAAAAAGTGATTAAGTGTCAAACAAAGGGTGTACTTTGTTCGAGGGCTCTAGAGAAAGGAGTCGAGCCTCAATTAAGAGGAGACTGTTCAATGGCTCCATAGGTCTCAGGGAGACTTTATGGTATACTTTATTCGAAAGAAAAATTGTTGAGGATTGTTGGACGGGAGTCCCACATCGAATAATTAAGAGGATGATCATGGGTTTATAAGTAAGGAATAAATCTCCATTAGTATAAGGCCATTTGGGAAAACCAAAAGCAAAACCATGAGAGTTTATGTTCAAAGTGGACAATATCATACAATTGTGGACAATATCATACAATTGTGGAAGTTTGTGATTCCTAACAACTATATGATTTGAAGTGACGTGCAGCTCCTCCAGAAAGAATGAATGTCTAAGTGCATATAAAATCTATTTTCTTTTGCCATTTACTTTATTAAGAGAAATTTTATGATATAAATAACCTTGGGTTGATTCAAATGAATCCCCTCGTAATCTCATTTCTTGGAAGATTTTGTGGTTGTGGGGGGGTCAATTTTTAAGCGTTGATTAGATATTGTTCCTCAGAAGTACGAAAACACTAAACATGACTGCTTAACCATATGTATAAATGTCATCCATGTGGATTTACTACTTAATCACTGCTTGAATCGTTTTTAAATCAAAAGTTGGTGATTGTCAAATTACAGGCATTGATATTGTCCTTGTGTTCTTTGTTTTTGGAGAAAATAGAACTACAAAAGCTTGGGCCCTTCATTGCTGCATCACAACGTGGGAGCGTATCTGATGCCTCTGCAACAACTTCTGCCGCTACCCAAGTTGAAATTGGAATCGTCTGTAAGAACGAAGAGCCAAGAATGAAGCAATTCTTTAAATCAAAGAAGTCTAAGAGGTTGATTGCCATTTATGCGGACTGGCTCGAAGATTGAGTTACCCACAACAAAGATTTCACCAAATACCGAGGCTTTTAAATGAAGGTTCTCCCATAACTTCTTAATTTCTTATCCACATTGAATTAGAATATCATTCTTAGCAAGAATATGAAATTTTTTACTTTTTGTCAGAGATGCATGTAGGAAG

mRNA sequence

ATGAGTGCTACTTATCGTTTTAACGAAATTACTCCTCCGGTCCCAGAGGCTCGTGGCGATTCGTCGGCATTGCCTCCTCCACATTCGGATAGTGGACTCCAACAGCGTACTATGCCTTCAAAATCTCGGATTCCACCATCAAACAATCGGAACATTGGGTATGACCATGAGTTGGGGTGTATGTCTACACCTGCTTTGAATGATACTCATAGAAGGTTACCTTCCTTGCGAGGAATTGAATTTCATGAAGGTCAATTGTCAGGGCGTTCGAATGAAATGAAAGCATGCAGACAGTTCCAACGCCGGAGGAAATGTGCATATGGGGATCAGTGTCGTTACCTTCATGAAATTCCTGAGAAAACTAGAGATTTTGGGTCCACCACCCAGAATTACGAGGTTAGAATAGTAGATTCTGGTCATGTTATGAATCGAAGACGTGGGTTGGATCAATTGGAAGAAGTCAGATCAAAAGTACAAACAGAGATTGTTGTCCGCGGTGAGATTCCAAAGCCTGTAAGATGCAAAACAAGGCTCTGTTACCCCTTGCAGAAGACTGGTAGCTGCCCATATGGGGCGGTTTGTCGCATTGCCCATGAAGAAGCAGAACTACAAAAGCTTGGGCCCTTCATTGCTGCATCACAACGTGGGAGCGTATCTGATGCCTCTGCAACAACTTCTGCCGCTACCCAAGTTGAAATTGGAATCGTCTGTAAGAACGAAGAGCCAAGAATGAAGCAATTCTTTAAATCAAAGAAGTCTAAGAGGTTGATTGCCATTTATGCGGACTGGCTCGAAGATTGAGTTACCCACAACAAAGATTTCACCAAATACCGAGGCTTTTAAATGAAGGTTCTCCCATAACTTCTTAATTTCTTATCCACATTGAATTAGAATATCATTCTTAGCAAGAATATGAAATTTTTTACTTTTTGTCAGAGATGCATGTAGGAAG

Coding sequence (CDS)

ATGAGTGCTACTTATCGTTTTAACGAAATTACTCCTCCGGTCCCAGAGGCTCGTGGCGATTCGTCGGCATTGCCTCCTCCACATTCGGATAGTGGACTCCAACAGCGTACTATGCCTTCAAAATCTCGGATTCCACCATCAAACAATCGGAACATTGGGTATGACCATGAGTTGGGGTGTATGTCTACACCTGCTTTGAATGATACTCATAGAAGGTTACCTTCCTTGCGAGGAATTGAATTTCATGAAGGTCAATTGTCAGGGCGTTCGAATGAAATGAAAGCATGCAGACAGTTCCAACGCCGGAGGAAATGTGCATATGGGGATCAGTGTCGTTACCTTCATGAAATTCCTGAGAAAACTAGAGATTTTGGGTCCACCACCCAGAATTACGAGGTTAGAATAGTAGATTCTGGTCATGTTATGAATCGAAGACGTGGGTTGGATCAATTGGAAGAAGTCAGATCAAAAGTACAAACAGAGATTGTTGTCCGCGGTGAGATTCCAAAGCCTGTAAGATGCAAAACAAGGCTCTGTTACCCCTTGCAGAAGACTGGTAGCTGCCCATATGGGGCGGTTTGTCGCATTGCCCATGAAGAAGCAGAACTACAAAAGCTTGGGCCCTTCATTGCTGCATCACAACGTGGGAGCGTATCTGATGCCTCTGCAACAACTTCTGCCGCTACCCAAGTTGAAATTGGAATCGTCTGTAAGAACGAAGAGCCAAGAATGAAGCAATTCTTTAAATCAAAGAAGTCTAAGAGGTTGATTGCCATTTATGCGGACTGGCTCGAAGATTGA

Protein sequence

MSATYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSRIPPSNNRNIGYDHELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGRSNEMKACRQFQRRRKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVRSKVQTEIVVRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLGPFIAASQRGSVSDASATTSAATQVEIGIVCKNEEPRMKQFFKSKKSKRLIAIYADWLED
Homology
[Close]
BLAST of CmaCh17G008450 vs. Swiss-Prot
Match: C3H39_ARATH (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-12
Identity = 55/188 (29.26%), Postives = 77/188 (40.96%), Query Frame = 1 

Query: 93  MKACRQFQRRRKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLE 152
           MK CR+F    +C YGD+C ++HE   K R+     +   V  V +            L 
Sbjct: 186 MKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLI 245

Query: 153 EVRSKVQTEIVV---RGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLGPF 212
           EV  +    +      G + K V  KTRLC     TG CP+G  C  AH +AEL      
Sbjct: 246 EVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGR 305

Query: 213 IAASQRGSVSDASA----------TTSAATQVEIGIVCKNEEPRMKQ-FFKSKKSKRLIA 267
           +      +V+  +                TQV       NEE R K+   K   SK++  
Sbjct: 306 VEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINR 365

[Close]
BLAST of CmaCh17G008450 vs. Swiss-Prot
Match: C3H12_ARATH (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-09
Identity = 69/274 (25.18%), Postives = 105/274 (38.32%), Query Frame = 1 

Query: 43  RIPPSNNRNIGYDHE---LGCMSTPALNDTHR-----RLPSLRGIEFHEGQLSGRSNEMK 102
           R PP N + I   HE    G M TP ++         ++PSL          SGRS + +
Sbjct: 121 RRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAE----SGRSFKGR 180

Query: 103 ACRQFQRRRKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEV 162
            C++F     C YG+ C +LH+   + R+      +  + +   G+      G       
Sbjct: 181 HCKKFYTEEGCPYGESCTFLHDEASRNRE------SVAISLGPGGYGSGGGGGSGGGSVG 240

Query: 163 RSKVQTEIVVRG-----------EIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAEL 222
                + +VV G           +I KP   KTR+C   + TG CP+GA C  AH  AEL
Sbjct: 241 GGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 300

Query: 223 QKLGPFIAASQ-RGSVS------------------------------DASATTSAATQVE 267
            + G  +   + +  VS                              DAS  T  A Q  
Sbjct: 301 HRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRA 360

[Close]
BLAST of CmaCh17G008450 vs. Swiss-Prot
Match: C3H56_ORYSJ (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-09
Identity = 42/143 (29.37%), Postives = 63/143 (44.06%), Query Frame = 1 

Query: 87  SGRSNEMKACRQFQRRRKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRR 146
           SGR+ + + C++F     C YGD C +LH+   K R+  + + +  V     G   N   
Sbjct: 166 SGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAA 225

Query: 147 GLDQLEEVRSKVQTEIVVRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKL 206
                    +   +     G + KP   KTR+C   + TG CP+G+ C  AH  AEL K 
Sbjct: 226 AA-------AASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKY 285

Query: 207 GPFIAASQRGSVSDASATTSAAT 230
           G        G + D  +  +AAT
Sbjct: 286 G--------GGLVDIDSRDAAAT 293

[Close]
BLAST of CmaCh17G008450 vs. TrEMBL
Match: A0A0A0KBW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433210 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.1e-82
Identity = 179/291 (61.51%), Postives = 200/291 (68.73%), Query Frame = 1 

Query: 1   MSATYRFNEITPPVPEARGDSSALPPPHSD-----------SGLQQR-TMPSKSRIPPSN 60
           MSA  RF      VPEARG+   LPPP+ D           SG+     MPS   IPP N
Sbjct: 1   MSAPNRF------VPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWN 60

Query: 61  NRNIGYDHELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGR-----SNEMKACRQFQRRR 120
           N NIGY+HE G   TP  NDT R LPS  GIEF EGQLS R     SNEMK CR FQRR+
Sbjct: 61  NWNIGYEHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRK 120

Query: 121 KCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVRSKVQTEIV 180
           KCAYGDQCR+LHEIP+KTRD GS++QNYEV  V  GHVM+R  G DQLEEVRSKVQT++V
Sbjct: 121 KCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVV 180

Query: 181 VRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLGPFIAASQRGSVSDAS- 240
           VRGEIPKP+  K+R CYP Q TG CPYGA CR AH EAELQKL P   ASQRGSV   S 
Sbjct: 181 VRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEP-CNASQRGSVGGVSG 240

Query: 241 -ATTSAATQV------EIGIVCKNEEPRMKQFFKSKKSKRLIAIYADWLED 267
            ATT+AA +       EIG  CKN+ PR+ QFF+SK+SK+LI IYADWLED
Sbjct: 241 TATTTAAVEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284

[Close]
BLAST of CmaCh17G008450 vs. TrEMBL
Match: B9GWD4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06010g PE=4 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 9.6e-15
Identity = 65/211 (30.81%), Postives = 93/211 (44.08%), Query Frame = 1 

Query: 56  HELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGRSNEMKACRQFQRRRKCAYGDQCRYLH 115
           H   C+   A+ D  + LP+LR +  +E        +   CR F   + C YG++CR+LH
Sbjct: 72  HGSKCLFAHAVCDLRKALPNLRRVVVNE--------DKNLCRMFNSGKGCTYGNKCRFLH 131

Query: 116 EIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVRSKVQTEIVVRGEIPKPVRCK 175
            +PE  +   +  QN+E   +  G                    T     G   K  + K
Sbjct: 132 VVPENFQK--NLGQNWESSAISIG-------------------TTGTASSGGHKKGYK-K 191

Query: 176 TRLCYPLQKTGSCPYGAVCRIAHEEAELQKLGPFIAASQRGSVSDASATTSAATQVEIGI 235
           TRLC   + TG CPYG VC  AH + EL+K    IA +  G V   ++ +    +  IG 
Sbjct: 192 TRLCNNWEMTGGCPYGKVCHFAHGQQELEKSDGSIALAS-GIVPTKASNSLLMGKDGIGS 251

Query: 236 VCKNEEPRMKQFFKSKKSKRLIAIYADWLED 267
             K+E       FK K  K+   IYADW+ED
Sbjct: 252 NHKHEAQATHCMFKWKALKKTRGIYADWIED 251

[Close]
BLAST of CmaCh17G008450 vs. TrEMBL
Match: A0A0J8CXK5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g049590 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 72/251 (28.69%), Postives = 101/251 (40.24%), Query Frame = 1 

Query: 43  RIPPSNNRNIGYDHELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGRSNEMKACRQFQRR 102
           R PP N ++I   HE     T    + H+ +P++   +      S RS + + C++F   
Sbjct: 124 RKPPPNWQDIVAAHEEERGVTVEQREEHQ-IPTISTTDSRVE--SQRSYKGRHCKKFYTE 183

Query: 103 RKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVRSKVQTEI 162
             C YGD C +LH+   ++R+         V I                  V   V    
Sbjct: 184 EGCPYGDNCTFLHDEQSRSRE--------SVAI-----------------SVSPTVGGAF 243

Query: 163 VVRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLG--------------P 222
              G I KP   KTR+C   + TGSCP+G+ C  AH  AEL K G              P
Sbjct: 244 GANGPIQKPSNWKTRICNKWETTGSCPFGSKCHFAHGLAELHKFGGGLMEGEVRDSSLPP 303

Query: 223 FIAASQRGSVSDASATTSAAT------QVEIGI-------VCKNEEPRMKQFFKSKKSKR 267
              AS   +  D SAT S +T       V +GI       V +   PR  Q  K K   +
Sbjct: 304 ETKASGMATKPDTSATQSLSTPRQEFHHVGLGIPSQRSSNVTQGAGPRPAQ--KWKGPDK 344

[Close]
BLAST of CmaCh17G008450 vs. TrEMBL
Match: R0HYU2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013913mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 56/196 (28.57%), Postives = 80/196 (40.82%), Query Frame = 1 

Query: 93  MKACRQFQRRRKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLE 152
           MK CR+F    +C YGD+C ++HE   K R+     +   V  V +         L  ++
Sbjct: 184 MKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGT-----TAADLQSVD 243

Query: 153 EVRSKVQTEIVVRGEIPKPVRC-----------KTRLCYPLQKTGSCPYGAVCRIAHEEA 212
              +    E+  +G IP PV             KTRLC   + TG CP+G  C  AH +A
Sbjct: 244 NSTASNHIEVSRQGSIPVPVPMNNGGAVKTVYWKTRLCMKFEITGQCPFGDKCHFAHGQA 303

Query: 213 ELQKLGPFIAASQRGSVSDASATT----------SAATQVEIGIVCKNEEPRMKQ-FFKS 267
           EL      +       V+  S  T              Q+       NEE R K+   K 
Sbjct: 304 ELHNSVGRVEGEAVNGVASLSKQTVVPANEAFAMKPTAQLTADSSGLNEEGRRKKCLLKW 363

[Close]
BLAST of CmaCh17G008450 vs. TrEMBL
Match: D7L9Y4_ARALL (Zinc finger (CCCH-type) family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479452 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 73/247 (29.55%), Postives = 102/247 (41.30%), Query Frame = 1 

Query: 43  RIPPSNNRNI-----GYDHELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGRSN-EMKAC 102
           R PPSN + I     G D E          +  R  PSL  +  +  +   +    MK C
Sbjct: 136 RQPPSNWQEIVGPPPGQDRE---KERERERERERERPSLAPVANNNWEDDQKIILRMKLC 195

Query: 103 RQFQRRRKCAYGDQCRYLHEIPEKTR-DFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVR 162
           R+F    +C YGD+C ++HE   K R D G   ++  + +  S          + +E  R
Sbjct: 196 RKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGTSAADPPSDTASNHIEVNR 255

Query: 163 SKVQTEIVV-----RGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAEL-QKLGPF 222
              Q  I V      G + K V  KTRLC     TG CP+G  C  AH + EL   +G  
Sbjct: 256 ---QGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQTELHNSVGRV 315

Query: 223 IAASQRGSVSDASATTSAA---------TQVEIGIVCKNEEPRMKQ-FFKSKKSKRLIAI 267
              +   + S +  T   A         TQV       NEE R K+   K   SK++  I
Sbjct: 316 DGEAVNATASVSKQTVVPANEAFAMKPTTQVTADSSGLNEEGRRKKCLLKWSDSKKINRI 375

[Close]
BLAST of CmaCh17G008450 vs. TAIR10
Match: AT3G19360.1 (AT3G19360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 55/188 (29.26%), Postives = 77/188 (40.96%), Query Frame = 1 

Query: 93  MKACRQFQRRRKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLE 152
           MK CR+F    +C YGD+C ++HE   K R+     +   V  V +            L 
Sbjct: 186 MKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLI 245

Query: 153 EVRSKVQTEIVV---RGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLGPF 212
           EV  +    +      G + K V  KTRLC     TG CP+G  C  AH +AEL      
Sbjct: 246 EVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGR 305

Query: 213 IAASQRGSVSDASA----------TTSAATQVEIGIVCKNEEPRMKQ-FFKSKKSKRLIA 267
           +      +V+  +                TQV       NEE R K+   K   SK++  
Sbjct: 306 VEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINR 365

[Close]
BLAST of CmaCh17G008450 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 69/274 (25.18%), Postives = 105/274 (38.32%), Query Frame = 1 

Query: 43  RIPPSNNRNIGYDHE---LGCMSTPALNDTHR-----RLPSLRGIEFHEGQLSGRSNEMK 102
           R PP N + I   HE    G M TP ++         ++PSL          SGRS + +
Sbjct: 121 RRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAE----SGRSFKGR 180

Query: 103 ACRQFQRRRKCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEV 162
            C++F     C YG+ C +LH+   + R+      +  + +   G+      G       
Sbjct: 181 HCKKFYTEEGCPYGESCTFLHDEASRNRE------SVAISLGPGGYGSGGGGGSGGGSVG 240

Query: 163 RSKVQTEIVVRG-----------EIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAEL 222
                + +VV G           +I KP   KTR+C   + TG CP+GA C  AH  AEL
Sbjct: 241 GGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 300

Query: 223 QKLGPFIAASQ-RGSVS------------------------------DASATTSAATQVE 267
            + G  +   + +  VS                              DAS  T  A Q  
Sbjct: 301 HRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRA 360

[Close]
BLAST of CmaCh17G008450 vs. NCBI nr
Match: gi|449436118|ref|XP_004135841.1| (PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 5.9e-82
Identity = 179/291 (61.51%), Postives = 200/291 (68.73%), Query Frame = 1 

Query: 1   MSATYRFNEITPPVPEARGDSSALPPPHSD-----------SGLQQR-TMPSKSRIPPSN 60
           MSA  RF      VPEARG+   LPPP+ D           SG+     MPS   IPP N
Sbjct: 1   MSAPNRF------VPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWN 60

Query: 61  NRNIGYDHELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGR-----SNEMKACRQFQRRR 120
           N NIGY+HE G   TP  NDT R LPS  GIEF EGQLS R     SNEMK CR FQRR+
Sbjct: 61  NWNIGYEHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRK 120

Query: 121 KCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVRSKVQTEIV 180
           KCAYGDQCR+LHEIP+KTRD GS++QNYEV  V  GHVM+R  G DQLEEVRSKVQT++V
Sbjct: 121 KCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVV 180

Query: 181 VRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLGPFIAASQRGSVSDAS- 240
           VRGEIPKP+  K+R CYP Q TG CPYGA CR AH EAELQKL P   ASQRGSV   S 
Sbjct: 181 VRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEP-CNASQRGSVGGVSG 240

Query: 241 -ATTSAATQV------EIGIVCKNEEPRMKQFFKSKKSKRLIAIYADWLED 267
            ATT+AA +       EIG  CKN+ PR+ QFF+SK+SK+LI IYADWLED
Sbjct: 241 TATTTAAVEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284

[Close]
BLAST of CmaCh17G008450 vs. NCBI nr
Match: gi|659122336|ref|XP_008461087.1| (PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 9.4e-80
Identity = 174/291 (59.79%), Postives = 192/291 (65.98%), Query Frame = 1 

Query: 1   MSATYRFNEITPPVPEARGDSSALPPPHSD------------SGLQQRTMPSKSRIPPSN 60
           MSA  RF      VPEARG+   LPPP+ D              +    MPS   IPP N
Sbjct: 1   MSAPNRF------VPEARGNWPLLPPPYPDPRNQSFYRSTMSGAVSSWRMPSNFGIPPWN 60

Query: 61  NRNIGYDHELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGR-----SNEMKACRQFQRRR 120
           N NIGY+HELG    P  NDTHR LPS  GIEFHEGQLS R     SNEMK CR FQRR+
Sbjct: 61  NWNIGYEHELGRSYRPGFNDTHRMLPSRPGIEFHEGQLSERWNVDDSNEMKVCRLFQRRK 120

Query: 121 KCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVRSKVQTEIV 180
           KCAYGDQCR+LHEIPEKTRD GS++QNYEVR          R G DQLEEVRSKVQT++V
Sbjct: 121 KCAYGDQCRFLHEIPEKTRDSGSSSQNYEVR----------RSGFDQLEEVRSKVQTKVV 180

Query: 181 VRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLGPFIAASQRGSVSDASA 240
           VRGEIPKP+  K R CYP Q TG CPYGA CR AH EAELQKL P  +ASQRGSV   SA
Sbjct: 181 VRGEIPKPLIGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEP-CSASQRGSVGGVSA 240

Query: 241 TTSAATQV--------EIGIVCKNEEPRMKQFFKSKKSKRLIAIYADWLED 267
           T +    V        EIG  CKN+ PR+ QFF+SK+SK+LI IYADWLED
Sbjct: 241 TATTTAPVEAGLRSSKEIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 274

[Close]
BLAST of CmaCh17G008450 vs. NCBI nr
Match: gi|778729122|ref|XP_011659534.1| (PREDICTED: uncharacterized protein LOC101205166 isoform X2 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 4.0e-62
Identity = 136/219 (62.10%), Postives = 150/219 (68.49%), Query Frame = 1 

Query: 1   MSATYRFNEITPPVPEARGDSSALPPPHSD-----------SGLQQR-TMPSKSRIPPSN 60
           MSA  RF      VPEARG+   LPPP+ D           SG+     MPS   IPP N
Sbjct: 1   MSAPNRF------VPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWN 60

Query: 61  NRNIGYDHELGCMSTPALNDTHRRLPSLRGIEFHEGQLSGR-----SNEMKACRQFQRRR 120
           N NIGY+HE G   TP  NDT R LPS  GIEF EGQLS R     SNEMK CR FQRR+
Sbjct: 61  NWNIGYEHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRK 120

Query: 121 KCAYGDQCRYLHEIPEKTRDFGSTTQNYEVRIVDSGHVMNRRRGLDQLEEVRSKVQTEIV 180
           KCAYGDQCR+LHEIP+KTRD GS++QNYEV  V  GHVM+R  G DQLEEVRSKVQT++V
Sbjct: 121 KCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVV 180

Query: 181 VRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAE 203
           VRGEIPKP+  K+R CYP Q TG CPYGA CR AH EAE
Sbjct: 181 VRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAE 213

[Close]
BLAST of CmaCh17G008450 vs. NCBI nr
Match: gi|743939993|ref|XP_011014453.1| (PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X3 [Populus euphratica])

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-18
Identity = 63/185 (34.05%), Postives = 91/185 (49.19%), Query Frame = 1 

Query: 91  NEMKACRQFQRRRKCAYGDQCRYLHEIPEKTR-DFGSTTQNYEVRIVDSGHVMNRRRGLD 150
           ++MK C++F    +C YGD+C +LHE P   R D G   ++  + I  +GH+M +  G+ 
Sbjct: 115 HKMKLCKKFYNGEECPYGDRCNFLHEDPANFREDAGRFRESSAISIGTTGHLMGQGSGVF 174

Query: 151 QLEEVRSKVQTEI--VVRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLG 210
              EV     T +    R  + KPV  KT+LC   + TG CP+G  C  AH  AELQ  G
Sbjct: 175 NAAEVNRPANTAVSDAPRSNLIKPVYWKTKLCTKWEMTGQCPFGEKCHFAHGLAELQVPG 234

Query: 211 --PFIAASQRGSVSDASAT----TSAATQVEIGIVCKNEEPRMKQFFKSKKSKRLIAIYA 267
               + A   GS    S T     + +  + + +    EE   K   K K  K++  IYA
Sbjct: 235 GRNEVEAGNAGSTVTNSPTPVLPNNTSPSMTVNVPSLVEEKGTKCLLKWKGQKKINRIYA 294

[Close]
BLAST of CmaCh17G008450 vs. NCBI nr
Match: gi|743939991|ref|XP_011014452.1| (PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2 [Populus euphratica])

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-18
Identity = 63/185 (34.05%), Postives = 91/185 (49.19%), Query Frame = 1 

Query: 91  NEMKACRQFQRRRKCAYGDQCRYLHEIPEKTR-DFGSTTQNYEVRIVDSGHVMNRRRGLD 150
           ++MK C++F    +C YGD+C +LHE P   R D G   ++  + I  +GH+M +  G+ 
Sbjct: 146 HKMKLCKKFYNGEECPYGDRCNFLHEDPANFREDAGRFRESSAISIGTTGHLMGQGSGVF 205

Query: 151 QLEEVRSKVQTEI--VVRGEIPKPVRCKTRLCYPLQKTGSCPYGAVCRIAHEEAELQKLG 210
              EV     T +    R  + KPV  KT+LC   + TG CP+G  C  AH  AELQ  G
Sbjct: 206 NAAEVNRPANTAVSDAPRSNLIKPVYWKTKLCTKWEMTGQCPFGEKCHFAHGLAELQVPG 265

Query: 211 --PFIAASQRGSVSDASAT----TSAATQVEIGIVCKNEEPRMKQFFKSKKSKRLIAIYA 267
               + A   GS    S T     + +  + + +    EE   K   K K  K++  IYA
Sbjct: 266 GRNEVEAGNAGSTVTNSPTPVLPNNTSPSMTVNVPSLVEEKGTKCLLKWKGQKKINRIYA 325

The following BLAST results are available for this feature:
BLAST of CmaCh17G008450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H39_ARATH2.2e-1229.26Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g193... [more]
C3H12_ARATH2.3e-0925.18Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g323... [more]
C3H56_ORYSJ3.9e-0929.37Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN... [more]
BLAST of CmaCh17G008450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBW4_CUCSA4.1e-8261.51Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433210 PE=4 SV=1[more]
B9GWD4_POPTR9.6e-1530.81Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06010g PE=4 SV=2[more]
A0A0J8CXK5_BETVU3.2e-1028.69Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g049590 PE=4 S... [more]
R0HYU2_9BRAS4.2e-1028.57Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013913mg PE=4 SV=1[more]
D7L9Y4_ARALL9.3e-1029.55Zinc finger (CCCH-type) family protein OS=Arabidopsis lyrata subsp. lyrata GN=AR... [more]
BLAST of CmaCh17G008450 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19360.11.2e-1329.26 Zinc finger (CCCH-type) family protein[more]
AT1G32360.11.3e-1025.18 Zinc finger (CCCH-type) family protein[more]
BLAST of CmaCh17G008450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436118|ref|XP_004135841.1|5.9e-8261.51PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 [Cucumi... [more]
gi|659122336|ref|XP_008461087.1|9.4e-8059.79PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo][more]
gi|778729122|ref|XP_011659534.1|4.0e-6262.10PREDICTED: uncharacterized protein LOC101205166 isoform X2 [Cucumis sativus][more]
gi|743939993|ref|XP_011014453.1|3.5e-1834.05PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X3 [Populu... [more]
gi|743939991|ref|XP_011014452.1|3.5e-1834.05PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2 [Populu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008450.1CmaCh17G008450.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 169..205
score: 5.3E-10coord: 94..119
score: 3.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 94..115
score: 1.6E-6coord: 175..198
score: 5.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 173..200
score: 0.053coord: 90..117
score: 0.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 173..201
score: 9.77coord: 90..118
score: 14
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 170..204
score: 1.02E-6coord: 92..119
score: 2.0
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 93..266
score: 1.8
NoneNo IPR availablePANTHERPTHR12547:SF70ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39coord: 93..266
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G008450Cucsa.105270Cucumber (Gy14) v1cgycmaB0237
CmaCh17G008450Cla015383Watermelon (97103) v1cmawmB328
CmaCh17G008450Csa7G433210Cucumber (Chinese Long) v2cmacuB388
CmaCh17G008450MELO3C023403Melon (DHL92) v3.5.1cmameB326
CmaCh17G008450ClCG09G002730Watermelon (Charleston Gray)cmawcgB306
CmaCh17G008450CSPI07G20790Wild cucumber (PI 183967)cmacpiB392
CmaCh17G008450CmoCh17G008170Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G008450CmoCh05G013250Cucurbita moschata (Rifu)cmacmoB361
CmaCh17G008450CmoCh08G006370Cucurbita moschata (Rifu)cmacmoB367
CmaCh17G008450Lsi02G027280Bottle gourd (USVL1VR-Ls)cmalsiB348
CmaCh17G008450Lsi11G003000Bottle gourd (USVL1VR-Ls)cmalsiB343
CmaCh17G008450Cp4.1LG12g07830Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G008450Cp4.1LG11g10810Cucurbita pepo (Zucchini)cmacpeB369
CmaCh17G008450Cp4.1LG17g05820Cucurbita pepo (Zucchini)cmacpeB391
CmaCh17G008450MELO3C023403.2Melon (DHL92) v3.6.1cmamedB379
CmaCh17G008450CsaV3_2G002700Cucumber (Chinese Long) v3cmacucB0423
CmaCh17G008450CsaV3_7G032610Cucumber (Chinese Long) v3cmacucB0462
CmaCh17G008450Cla97C09G164870Watermelon (97103) v2cmawmbB387
CmaCh17G008450Cla97C11G209340Watermelon (97103) v2cmawmbB362
CmaCh17G008450Bhi09G000039Wax gourdcmawgoB0492
CmaCh17G008450CsGy2G001570Cucumber (Gy14) v2cgybcmaB196
CmaCh17G008450CsGy7G019030Cucumber (Gy14) v2cgybcmaB925
CmaCh17G008450Carg09572Silver-seed gourdcarcmaB1419
CmaCh17G008450Carg10891Silver-seed gourdcarcmaB0799
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh17G008450CmaCh05G013080Cucurbita maxima (Rimu)cmacmaB368
CmaCh17G008450CmaCh08G006720Cucurbita maxima (Rimu)cmacmaB380
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G008450Silver-seed gourdcarcmaB0192
CmaCh17G008450Silver-seed gourdcarcmaB0277
CmaCh17G008450Watermelon (97103) v2cmawmbB382
CmaCh17G008450Cucurbita maxima (Rimu)cmacmaB098
CmaCh17G008450Cucurbita maxima (Rimu)cmacmaB175
CmaCh17G008450Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G008450Cucurbita moschata (Rifu)cmacmoB355
CmaCh17G008450Watermelon (Charleston Gray)cmawcgB332
CmaCh17G008450Watermelon (97103) v1cmawmB339
CmaCh17G008450Cucurbita pepo (Zucchini)cmacpeB399
CmaCh17G008450Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G008450Cucurbita pepo (Zucchini)cmacpeB396