CmaCh16G007890 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G007890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	TIR-NBS disease resistance-like protein
Location	Cma_Chr16 : 4332222 .. 4332850 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAACCGCATGTCCGCCGTCGCCAACATTACGCCAAGGCAGTTTCTAGCTCATCTTGGCAACAACCACATGCCTATCGTAAAGCCCTGCGACGTCTTCATAAACCACAGAGGCGTCGACACGAAAAAGACAGTGGCAGCGTTGCTGTACGACAGGCTTGTCCGGATGAACCTCCGCCCGTTTCTAGACTACAAGAATTTGAAGCCTGGAGAGAAGCTGTTCGATGAAATTCATGGCGCCATTAGGCACTGCAAAGTTGGTGTGGCTGTGTTCTCGCCTCGCTATTGTGAGTCTTACTTTTGCCTACATGAGTTGGCCATGATCATCGAGTCCAACAAGAAGCTTATTCCCATCTTTTGTGATATCAAACCATCTGAGCTTCGTATTGAGGATAGCAATGATTATGAAATAGATGAGGTTAGGAGGTTCAATTGGGCTCTCCATGAAGCTAAGCAGTTTGAGGGCCTCAAATTTAATTCCTTTAAAGAGTAAGATTAATATATTTTCATATATATTATAGTATTTAATTTAATTTAATTTAATTTATTTCTCTATGTTTTTTCAGGACATTACCAGAAGTTGTGACGAAGATATCAAATGTTGTGATCAGAAATTTGGCAAACTAA

mRNA sequence

ATGATGAACCGCATGTCCGCCGTCGCCAACATTACGCCAAGGCAGTTTCTAGCTCATCTTGGCAACAACCACATGCCTATCGTAAAGCCCTGCGACGTCTTCATAAACCACAGAGGCGTCGACACGAAAAAGACAGTGGCAGCGTTGCTGTACGACAGGCTTGTCCGGATGAACCTCCGCCCGTTTCTAGACTACAAGAATTTGAAGCCTGGAGAGAAGCTGTTCGATGAAATTCATGGCGCCATTAGGCACTGCAAAGTTGGTGTGGCTGTGTTCTCGCCTCGCTATTGTGAGTCTTACTTTTGCCTACATGAGTTGGCCATGATCATCGAGTCCAACAAGAAGCTTATTCCCATCTTTTGTGATATCAAACCATCTGAGCTTCGTATTGAGGATAGCAATGATTATGAAATAGATGAGGTTAGGAGGTTCAATTGGGCTCTCCATGAAGCTAAGCAGTTTGAGGGCCTCAAATTTAATTCCTTTAAAGAGACATTACCAGAAGTTGTGACGAAGATATCAAATGTTGTGATCAGAAATTTGGCAAACTAA

Coding sequence (CDS)

ATGATGAACCGCATGTCCGCCGTCGCCAACATTACGCCAAGGCAGTTTCTAGCTCATCTTGGCAACAACCACATGCCTATCGTAAAGCCCTGCGACGTCTTCATAAACCACAGAGGCGTCGACACGAAAAAGACAGTGGCAGCGTTGCTGTACGACAGGCTTGTCCGGATGAACCTCCGCCCGTTTCTAGACTACAAGAATTTGAAGCCTGGAGAGAAGCTGTTCGATGAAATTCATGGCGCCATTAGGCACTGCAAAGTTGGTGTGGCTGTGTTCTCGCCTCGCTATTGTGAGTCTTACTTTTGCCTACATGAGTTGGCCATGATCATCGAGTCCAACAAGAAGCTTATTCCCATCTTTTGTGATATCAAACCATCTGAGCTTCGTATTGAGGATAGCAATGATTATGAAATAGATGAGGTTAGGAGGTTCAATTGGGCTCTCCATGAAGCTAAGCAGTTTGAGGGCCTCAAATTTAATTCCTTTAAAGAGACATTACCAGAAGTTGTGACGAAGATATCAAATGTTGTGATCAGAAATTTGGCAAACTAA

Protein sequence

MMNRMSAVANITPRQFLAHLGNNHMPIVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIEDSNDYEIDEVRRFNWALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNLAN

Homology

[Close]

BLAST of CmaCh16G007890 vs. Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = 1


Query: 32  DVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAV 91
           DVF++ RG DT+KT  + LY+ L    ++ F D K L+ G  +  E+  AI   +  + V
Sbjct: 13  DVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVV 72

Query: 92  FSPRYCESYFCLHELAMIIESNKK----LIPIFCDIKPSELR----------IEDSNDY- 151
           FS  Y  S +CL+EL  I+E   +    +IPIF D+ PS +R           E    Y 
Sbjct: 73  FSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYK 132

Query: 152 -EIDEVRRFNWALHEAKQFEGLKFNSFK---ETLPEVVTKISN 176
            +++ ++R+  AL+EA   +G   N  K   + + ++V +IS+
Sbjct: 133 DDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISS 175

[Close]

BLAST of CmaCh16G007890 vs. Swiss-Prot
Match: TIR_ARATH (Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-12
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 32  DVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAV 91
           DVF++ RG DT+    + LY  LVR ++R F D K L+ G++   E+   I   +  V V
Sbjct: 10  DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69

Query: 92  FSPRYCESYFCLHELAMIIESNKK----LIPIFCDIKPSELR 130
            S  Y  S +CL EL  I++  KK    ++PIF  ++P+ +R
Sbjct: 70  VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVR 111

[Close]

BLAST of CmaCh16G007890 vs. Swiss-Prot
Match: RPP5_ARATH (Disease resistance protein RPP5 OS=Arabidopsis thaliana GN=RPP5 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-09
Identity = 33/102 (32.35%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 32  DVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAV 91
           DVF +  GVD +KT  + L + L   ++  F+D+  ++    +  E+  AIR  ++ + +
Sbjct: 13  DVFPSFSGVDVRKTFLSHLIEALDGKSINTFIDH-GIERSRTIAPELISAIREARISIVI 72

Query: 92  FSPRYCESYFCLHELAMIIES----NKKLIPIFCDIKPSELR 130
           FS  Y  S +CL+EL  I +      + +IP+F D+ PSE+R
Sbjct: 73  FSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVR 113

[Close]

BLAST of CmaCh16G007890 vs. Swiss-Prot
Match: CSA1_ARATH (Disease resistance-like protein CSA1 OS=Arabidopsis thaliana GN=CSA1 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 33  VFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEK--LFDEIHGAIRHCKVGVA 92
           VFIN RGV+ +K   + L   L R  +  F+D       E   L + I G+    ++ +A
Sbjct: 19  VFINFRGVELRKNFVSHLEKGLKRKGINAFIDTDEEMGQELSVLLERIEGS----RIALA 78

Query: 93  VFSPRYCESYFCLHELAMIIESNKK----LIPIFCDIKP 126
           +FSPRY ES +CL ELA + E  ++    +IPIF  ++P
Sbjct: 79  IFSPRYTESKWCLKELAKMKERTEQKELVVIPIFYKVQP 113

[Close]

BLAST of CmaCh16G007890 vs. TrEMBL
Match: B9N1K6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41430g PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 110/180 (61.11%), Postives = 132/180 (73.33%), Query Frame = 1


Query: 6   SAVANITPRQFLAHLGNNHMP----IVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRP 65
           S++ N  PRQFL    +        I KPCDVFINHRG+DTK+TV  LLYD L R+NL P
Sbjct: 4   SSIVNF-PRQFLRQYPSIQPAVTSRIAKPCDVFINHRGIDTKRTVVTLLYDHLFRLNLHP 63

Query: 66  FLDYKNLKPGEKLFDEIHGAIRHCKVGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFC 125
           FLD KN+KPG+KLFD I+ AIR CKVGV VFSPRYCESYFCLHELA+I+ES KK+IPIFC
Sbjct: 64  FLDNKNMKPGDKLFDNINSAIRKCKVGVTVFSPRYCESYFCLHELALIMESKKKVIPIFC 123

Query: 126 DIKPSELRIEDSNDYEIDEVRRFNWALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           DIKPS+LR+ +     ++++RRF WAL EAK   GL F+S K    EVVT  S++VI  L
Sbjct: 124 DIKPSQLRVVNDGKCPMEDIRRFRWALEEAKYTVGLTFDSLKGNWSEVVTSASDIVIETL 182

[Close]

BLAST of CmaCh16G007890 vs. TrEMBL
Match: B9HZY1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12380g PE=4 SV=2)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 103/155 (66.45%), Postives = 125/155 (80.65%), Query Frame = 1


Query: 27  IVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCK 86
           + KPCDVFINHRG+DTK+TVA LLYD L R+NL PFLD KN+KPG+KLFD I+ AIR CK
Sbjct: 13  VTKPCDVFINHRGIDTKRTVATLLYDHLSRLNLHPFLDNKNMKPGDKLFDNINSAIRKCK 72

Query: 87  VGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIEDSNDYEIDEVRRFNW 146
           VGV VFSPRYCESYFCLHELA+I+ES KK+IPIFCDIKPS+LR+ ++    ++++RRFNW
Sbjct: 73  VGVTVFSPRYCESYFCLHELALIMESKKKVIPIFCDIKPSQLRVVNNGKCPMEDIRRFNW 132

Query: 147 ALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           AL EAK   GL F+S K    +VVT  S++VI  L
Sbjct: 133 ALEEAKYTVGLTFDSLKGNWSDVVTSASDIVIETL 167

[Close]

BLAST of CmaCh16G007890 vs. TrEMBL
Match: A0A067JST6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20956 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 108/180 (60.00%), Postives = 135/180 (75.00%), Query Frame = 1


Query: 2   MNRMSAVANITPRQFLAHLGNNHMPIVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRP 61
           MNR S+      RQFL+     +  ++KPCDVFINHRG+DTK+TV +LLYD L R NL P
Sbjct: 1   MNRSSSYIVKFQRQFLSQTQMMNR-VIKPCDVFINHRGIDTKRTVVSLLYDHLSRFNLCP 60

Query: 62  FLDYKNLKPGEKLFDEIHGAIRHCKVGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFC 121
           FLD KN+KPG+KLF+ I+ AI+ C+VGV VFSPRYCESYFCLHELA+I+ES KK+IPIFC
Sbjct: 61  FLDNKNMKPGDKLFENINRAIKQCEVGVTVFSPRYCESYFCLHELALIMESKKKVIPIFC 120

Query: 122 DIKPSELRIEDSNDYEIDEVRRFNWALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 181
           DIKPS+LRI +      +E+ RFNWAL EAK   GL F+S K    EVVT  S+++I++L
Sbjct: 121 DIKPSQLRIVNKGLCTEEEIHRFNWALEEAKHTVGLTFDSLKGNWSEVVTSASDIIIKSL 179

[Close]

BLAST of CmaCh16G007890 vs. TrEMBL
Match: V4ULS1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010354mg PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-53
Identity = 99/154 (64.29%), Postives = 125/154 (81.17%), Query Frame = 1


Query: 28  VKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKV 87
           +KPCDVFINHRG+DTK+ VA LLYD L R+NLRPFLD KN+KPG+KLFD I+ AIR+CKV
Sbjct: 18  IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKV 77

Query: 88  GVAVFSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIEDSNDYEIDEVRRFNWA 147
           GVAVFSP YC+SYFCLHELA+++E+ KK+IPIFCDIKPS+L + D      +E+RRF+WA
Sbjct: 78  GVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWA 137

Query: 148 LHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           L EAK   GL F+S K    ++VT  S+++IR+L
Sbjct: 138 LEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSL 171

[Close]

BLAST of CmaCh16G007890 vs. TrEMBL
Match: A0A067GFD5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044205mg PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-53
Identity = 99/154 (64.29%), Postives = 125/154 (81.17%), Query Frame = 1


Query: 28  VKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKV 87
           +KPCDVFINHRG+DTK+ VA LLYD L R+NLRPFLD KN+KPG+KLFD I+ AIR+CKV
Sbjct: 18  IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKV 77

Query: 88  GVAVFSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIEDSNDYEIDEVRRFNWA 147
           GVAVFSP YC+SYFCLHELA+++E+ KK+IPIFCDIKPS+L + D      +E+RRF+WA
Sbjct: 78  GVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWA 137

Query: 148 LHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           L EAK   GL F+S K    ++VT  S+++IR+L
Sbjct: 138 LEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSL 171

[Close]

BLAST of CmaCh16G007890 vs. TAIR10
Match: AT1G52900.1 (AT1G52900.1 Toll-Interleukin-Resistance (TIR) domain family protein)

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-48
Identity = 92/151 (60.93%), Postives = 112/151 (74.17%), Query Frame = 1


Query: 32  DVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAV 91
           DVFINHRG DTK+ +A LLYD L   NLRPFLD KN+KPG+KLFD I+ AI   KV V V
Sbjct: 39  DVFINHRGSDTKRNIATLLYDNLKSRNLRPFLDSKNMKPGDKLFDHINNAILTSKVAVTV 98

Query: 92  FSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIE-DSNDYEIDEVRRFNWALHE 151
           FSP YC+SYFCLHELA+I+ES K++IPIFCDIKPS+L +  +      DE++RF WAL E
Sbjct: 99  FSPNYCDSYFCLHELALIMESRKRVIPIFCDIKPSQLDVMIERVTCSDDEIQRFRWALQE 158

Query: 152 AKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           AK   GL F+S+K  L EVVT  S+V++  L
Sbjct: 159 AKDIVGLTFDSYKGNLSEVVTVASDVIVERL 189

[Close]

BLAST of CmaCh16G007890 vs. TAIR10
Match: AT1G61105.1 (AT1G61105.1 Toll-Interleukin-Resistance (TIR) domain family protein)

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-47
Identity = 86/163 (52.76%), Postives = 115/163 (70.55%), Query Frame = 1


Query: 19  HLGNNHMPIVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEI 78
           ++ N  +P   PCD+FINHRG+DTKKT++ LLYD   R  L  FLD K+LKPG++LF EI
Sbjct: 17  YIANPTLPYPNPCDIFINHRGIDTKKTISGLLYDCFTRQRLTAFLDSKSLKPGDRLFVEI 76

Query: 79  HGAIRHCKVGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIEDSNDYEI 138
             AI+ C VG+AVFSPRYC+SYFCLHELA+++++ K++IPIFCD+KPSEL ++D      
Sbjct: 77  DMAIKACGVGIAVFSPRYCDSYFCLHELALLVKNKKRVIPIFCDVKPSELCVKDDKTRPA 136

Query: 139 DEVRRFNWALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
            E+RRF  AL EAK   GL F++      E +   S+ V +NL
Sbjct: 137 AEIRRFQLALEEAKYTVGLTFDTSNGDWSEFLAMASDAVTKNL 179

[Close]

BLAST of CmaCh16G007890 vs. TAIR10
Match: AT4G09430.1 (AT4G09430.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-16
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 1


Query: 28  VKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKV 87
           VK  DVF++ RG DT+  + + L+  LV + +R F D K L+ G+ + +++  AI+    
Sbjct: 12  VKEYDVFLSFRGADTRNNIVSYLHKALVDVGIRTFKDDKELEEGDIISEKLVNAIQTSWF 71

Query: 88  GVAVFSPRYCESYFCLHELAMIIESNKK----LIPIFCDIKPSELRIEDSNDYEI----- 147
            V V S +Y  S +CL EL  I+E + +    ++PIF  ++PS++R +  N +E+     
Sbjct: 72  AVVVLSEKYVTSSWCLEELRHIMELSIQDDIIVVPIFYKVEPSDVRYQ-KNSFEVKLQHY 131

Query: 148 ---DEVRRFNWALHEAKQFEGLKFNSFKE---TLPEVVTKISN 176
              +++ ++  AL +     G  F +  +    + E+V+KISN
Sbjct: 132 RDPEKILKWKGALTQVGNMSGKHFQTCSDEATNIAEIVSKISN 173

[Close]

BLAST of CmaCh16G007890 vs. TAIR10
Match: AT1G17615.1 (AT1G17615.1 Disease resistance protein (TIR-NBS class))

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-15
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 32  DVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAV 91
           DVF++ RG DT++T  + LY  L+ M +R F D   L+ G ++  ++  AI + K+ V +
Sbjct: 16  DVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAVVI 75

Query: 92  FSPRYCESYFCLHELAMIIESNKK----LIPIFCDIKPSELR 130
            S  Y  S +CL EL MI++  KK    ++PIF +++P+ +R
Sbjct: 76  ISKNYSASPWCLQELVMIMDVEKKGSIIVMPIFYNVEPAHVR 117

[Close]

BLAST of CmaCh16G007890 vs. TAIR10
Match: AT1G72920.1 (AT1G72920.1 Toll-Interleukin-Resistance (TIR) domain family protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.7e-15
Identity = 48/150 (32.00%), Postives = 75/150 (50.00%), Query Frame = 1


Query: 26  PIVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHC 85
           P     DVF++ RG+DT++   + LY  LVR  +R F D K L+ G ++  E+  AI   
Sbjct: 4   PTATKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEES 63

Query: 86  KVGVAVFSPRYCESYFCLHELAMIIESNKK----LIPIFCDIKPSELRIEDSNDYEIDEV 145
           K  V V S  Y  S +CL EL  I++   K    ++PIF  + P  LR       +I +V
Sbjct: 64  KFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLR------RQIGDV 123

Query: 146 RRFNWALHEAKQFEGLKFNSFKETLPEVVT 172
               +  HEA++ +  K  S++  L  + +
Sbjct: 124 AE-QFKKHEAREEDHEKVASWRRALTSLAS 146

[Close]

BLAST of CmaCh16G007890 vs. NCBI nr
Match: gi|778676301|ref|XP_011650563.1| (PREDICTED: vesicle-associated protein 1-4 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 7.9e-78
Identity = 144/184 (78.26%), Postives = 164/184 (89.13%), Query Frame = 1


Query: 2   MNRM--SAVANITPRQFLAHLGNNHMP--IVKPCDVFINHRGVDTKKTVAALLYDRLVRM 61
           MNR+  S V NITPRQFLAHLG   M    +KPCDVFINHRGVDTKKTVAALLYDRLVR+
Sbjct: 1   MNRVAVSGVGNITPRQFLAHLGKKEMKGMTLKPCDVFINHRGVDTKKTVAALLYDRLVRV 60

Query: 62  NLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAVFSPRYCESYFCLHELAMIIESNKKLI 121
           NLRPFLDYKN+KPG+KLFDEIHGAIR CKVGVAVFSPRYCESYFCLHELAM+ ESNKK+I
Sbjct: 61  NLRPFLDYKNMKPGDKLFDEIHGAIRKCKVGVAVFSPRYCESYFCLHELAMMFESNKKVI 120

Query: 122 PIFCDIKPSELRIEDSNDYEIDEVRRFNWALHEAKQFEGLKFNSFKETLPEVVTKISNVV 181
           PIFCDIK S+LRI+D +DYEIDE+RRF+WAL +A+ F+GLKF+S +ETL EVVTK SN++
Sbjct: 121 PIFCDIKASQLRIDDHHDYEIDELRRFDWALQKARSFDGLKFDSSRETLSEVVTKASNII 180

[Close]

BLAST of CmaCh16G007890 vs. NCBI nr
Match: gi|659102705|ref|XP_008452271.1| (PREDICTED: toll/interleukin-1 receptor-like protein [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 9.4e-71
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = 1


Query: 27  IVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCK 86
           I+KPCDVFINHRGVDTKKTVAALLYDRLVR+ LRPFLDYKNL+PGEKLFDEIHGAIR CK
Sbjct: 10  ILKPCDVFINHRGVDTKKTVAALLYDRLVRVRLRPFLDYKNLRPGEKLFDEIHGAIRQCK 69

Query: 87  VGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIEDSNDYEIDEVRRFNW 146
           VGVAVFSPRYCESYFCLHELAMIIESNKK+IPIFCDIK S+LRIED + YE DEVRRFNW
Sbjct: 70  VGVAVFSPRYCESYFCLHELAMIIESNKKVIPIFCDIKASQLRIEDHHGYETDEVRRFNW 129

Query: 147 ALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           AL +AK F+GLKF+S  ETL EVVTK SN+++R+L
Sbjct: 130 ALQQAKSFDGLKFDSSTETLSEVVTKASNIIMRSL 164

[Close]

BLAST of CmaCh16G007890 vs. NCBI nr
Match: gi|566154092|ref|XP_006370301.1| (hypothetical protein POPTR_0001s41430g [Populus trichocarpa])

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-55
Identity = 110/180 (61.11%), Postives = 132/180 (73.33%), Query Frame = 1


Query: 6   SAVANITPRQFLAHLGNNHMP----IVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRP 65
           S++ N  PRQFL    +        I KPCDVFINHRG+DTK+TV  LLYD L R+NL P
Sbjct: 4   SSIVNF-PRQFLRQYPSIQPAVTSRIAKPCDVFINHRGIDTKRTVVTLLYDHLFRLNLHP 63

Query: 66  FLDYKNLKPGEKLFDEIHGAIRHCKVGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFC 125
           FLD KN+KPG+KLFD I+ AIR CKVGV VFSPRYCESYFCLHELA+I+ES KK+IPIFC
Sbjct: 64  FLDNKNMKPGDKLFDNINSAIRKCKVGVTVFSPRYCESYFCLHELALIMESKKKVIPIFC 123

Query: 126 DIKPSELRIEDSNDYEIDEVRRFNWALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           DIKPS+LR+ +     ++++RRF WAL EAK   GL F+S K    EVVT  S++VI  L
Sbjct: 124 DIKPSQLRVVNDGKCPMEDIRRFRWALEEAKYTVGLTFDSLKGNWSEVVTSASDIVIETL 182

[Close]

BLAST of CmaCh16G007890 vs. NCBI nr
Match: gi|566195090|ref|XP_002316915.2| (hypothetical protein POPTR_0011s12380g [Populus trichocarpa])

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-55
Identity = 103/155 (66.45%), Postives = 125/155 (80.65%), Query Frame = 1


Query: 27  IVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCK 86
           + KPCDVFINHRG+DTK+TVA LLYD L R+NL PFLD KN+KPG+KLFD I+ AIR CK
Sbjct: 13  VTKPCDVFINHRGIDTKRTVATLLYDHLSRLNLHPFLDNKNMKPGDKLFDNINSAIRKCK 72

Query: 87  VGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFCDIKPSELRIEDSNDYEIDEVRRFNW 146
           VGV VFSPRYCESYFCLHELA+I+ES KK+IPIFCDIKPS+LR+ ++    ++++RRFNW
Sbjct: 73  VGVTVFSPRYCESYFCLHELALIMESKKKVIPIFCDIKPSQLRVVNNGKCPMEDIRRFNW 132

Query: 147 ALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           AL EAK   GL F+S K    +VVT  S++VI  L
Sbjct: 133 ALEEAKYTVGLTFDSLKGNWSDVVTSASDIVIETL 167

[Close]

BLAST of CmaCh16G007890 vs. NCBI nr
Match: gi|743898439|ref|XP_011042510.1| (PREDICTED: vesicle-associated protein 1-4-like [Populus euphratica])

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-55
Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 1


Query: 6   SAVANITPRQFLAHLGNNHMPIV----KPCDVFINHRGVDTKKTVAALLYDRLVRMNLRP 65
           S++ N  PRQF     +    +     KPCDVFINHRG+DTK+TV  LLYD L R+NL P
Sbjct: 4   SSIVNF-PRQFFRQYPSIQPAVTSRVAKPCDVFINHRGIDTKRTVVTLLYDHLFRLNLHP 63

Query: 66  FLDYKNLKPGEKLFDEIHGAIRHCKVGVAVFSPRYCESYFCLHELAMIIESNKKLIPIFC 125
           FLD KN+KPG+KLFD I+ AIR CKVGV VFSPRYCESYFCLHELA+I+ES KK+IPIFC
Sbjct: 64  FLDNKNMKPGDKLFDNINSAIRKCKVGVTVFSPRYCESYFCLHELALIMESKKKVIPIFC 123

Query: 126 DIKPSELRIEDSNDYEIDEVRRFNWALHEAKQFEGLKFNSFKETLPEVVTKISNVVIRNL 182
           DIKPS+LR+ D     ++++RRF WAL EAK   GL F+S K    EVVT  S++VI  L
Sbjct: 124 DIKPSQLRVVDDGKCPMEDIRRFRWALEEAKYTVGLTFDSLKGNWSEVVTSASDIVIETL 182

The following BLAST results are available for this feature:

BLAST of CmaCh16G007890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMVRN_NICGU	2.3e-13	31.90	TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	[more]
TIR_ARATH	9.9e-12	36.27	Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=...	[more]
RPP5_ARATH	2.7e-09	32.35	Disease resistance protein RPP5 OS=Arabidopsis thaliana GN=RPP5 PE=1 SV=1	[more]
CSA1_ARATH	1.1e-07	36.36	Disease resistance-like protein CSA1 OS=Arabidopsis thaliana GN=CSA1 PE=3 SV=1	[more]

BLAST of CmaCh16G007890 vs. TrEMBL


Match Name	E-value	Identity	Description
B9N1K6_POPTR	1.0e-55	61.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41430g PE=4 SV=1	[more]
B9HZY1_POPTR	1.0e-55	66.45	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12380g PE=4 SV=2	[more]
A0A067JST6_JATCU	1.1e-54	60.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20956 PE=4 SV=1	[more]
V4ULS1_9ROSI	2.1e-53	64.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010354mg PE=4 SV=1	[more]
A0A067GFD5_CITSI	2.1e-53	64.29	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044205mg PE=4 SV=1	[more]

BLAST of CmaCh16G007890 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52900.1	1.8e-48	60.93	Toll-Interleukin-Resistance (TIR) domain family protein	[more]
AT1G61105.1	1.5e-47	52.76	Toll-Interleukin-Resistance (TIR) domain family protein	[more]
AT4G09430.1	5.4e-16	30.06	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G17615.1	2.0e-15	36.27	Disease resistance protein (TIR-NBS class)	[more]
AT1G72920.1	7.7e-15	32.00	Toll-Interleukin-Resistance (TIR) domain family protein	[more]

BLAST of CmaCh16G007890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676301\|ref\|XP_011650563.1\|	7.9e-78	78.26	PREDICTED: vesicle-associated protein 1-4 [Cucumis sativus]	[more]
gi\|659102705\|ref\|XP_008452271.1\|	9.4e-71	83.87	PREDICTED: toll/interleukin-1 receptor-like protein [Cucumis melo]	[more]
gi\|566154092\|ref\|XP_006370301.1\|	1.5e-55	61.11	hypothetical protein POPTR_0001s41430g [Populus trichocarpa]	[more]
gi\|566195090\|ref\|XP_002316915.2\|	1.5e-55	66.45	hypothetical protein POPTR_0011s12380g [Populus trichocarpa]	[more]
gi\|743898439\|ref\|XP_011042510.1\|	1.5e-55	60.56	PREDICTED: vesicle-associated protein 1-4-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000157	TIR_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G007890.1	CmaCh16G007890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	GENE3D	G3DSA:3.40.50.10140		coord: 31..129 score: 3.4
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF01582	TIR	coord: 32..129 score: 3.2
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	SMART	SM00255	till_3	coord: 30..172 score: 5.7
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PROFILE	PS50104	TIR	coord: 29..136 score: 14
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	unknown	SSF52200	Toll/Interleukin receptor TIR domain	coord: 29..129 score: 3.14
None	No IPR available	PANTHER	PTHR31008	COP1-INTERACTING PROTEIN-RELATED	coord: 22..181 score: 1.7
None	No IPR available	PANTHER	PTHR31008:SF2	TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN-CONTAINING PROTEIN	coord: 22..181 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G007890	Cucsa.074640	Cucumber (Gy14) v1	cgycmaB0121
CmaCh16G007890	Cucsa.126460	Cucumber (Gy14) v1	cgycmaB0337
CmaCh16G007890	Cla011771	Watermelon (97103) v1	cmawmB309
CmaCh16G007890	Cla019476	Watermelon (97103) v1	cmawmB306
CmaCh16G007890	Csa3G102820	Cucumber (Chinese Long) v2	cmacuB328
CmaCh16G007890	Csa1G073070	Cucumber (Chinese Long) v2	cmacuB318
CmaCh16G007890	MELO3C016529	Melon (DHL92) v3.5.1	cmameB292
CmaCh16G007890	ClCG03G005710	Watermelon (Charleston Gray)	cmawcgB294
CmaCh16G007890	CSPI03G06050	Wild cucumber (PI 183967)	cmacpiB334
CmaCh16G007890	CSPI01G11820	Wild cucumber (PI 183967)	cmacpiB324
CmaCh16G007890	CmoCh16G008500	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G007890	Lsi05G007070	Bottle gourd (USVL1VR-Ls)	cmalsiB315
CmaCh16G007890	Cp4.1LG14g00280	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G007890	MELO3C016529.2	Melon (DHL92) v3.6.1	cmamedB345
CmaCh16G007890	MELO3C002574.2	Melon (DHL92) v3.6.1	cmamedB330
CmaCh16G007890	CsaV3_3G006150	Cucumber (Chinese Long) v3	cmacucB0382
CmaCh16G007890	CsaV3_1G011980	Cucumber (Chinese Long) v3	cmacucB0371
CmaCh16G007890	Cla97C03G057020	Watermelon (97103) v2	cmawmbB343
CmaCh16G007890	Bhi11G000620	Wax gourd	cmawgoB0414
CmaCh16G007890	CsGy3G006140	Cucumber (Gy14) v2	cgybcmaB341
CmaCh16G007890	CsGy1G011780	Cucumber (Gy14) v2	cgybcmaB084
CmaCh16G007890	Carg00030	Silver-seed gourd	carcmaB0946
CmaCh16G007890	Carg21084	Silver-seed gourd	carcmaB0660

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G007890	CmaCh04G009100	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G007890	Watermelon (97103) v2	cmawmbB336
CmaCh16G007890	Wax gourd	cmawgoB0423
CmaCh16G007890	Cucurbita maxima (Rimu)	cmacmaB041
CmaCh16G007890	Cucurbita moschata (Rifu)	cmacmoB317
CmaCh16G007890	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G007890	Watermelon (Charleston Gray)	cmawcgB283
CmaCh16G007890	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G007890	Cucurbita pepo (Zucchini)	cmacpeB362
CmaCh16G007890	Silver-seed gourd	carcmaB1243