CmaCh16G004970 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cma_Chr16 : 2541216 .. 2542516 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGTTTAATCAGGGAAGGGCTTAGAGTAGTTGCTGCTAGACAGACTACTGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGTTAACCTCCTTGGTTTGGAGAGGATACCGACCCCTTAGTTGCTAAACGCTGGGTTTTGGGGTTAGAGAACATCTTTGATTGCATAGGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTCGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAATTGGGACAAGGAAACAGAACCGTGACTGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTTTGTCGTACTCCGATCTTAGAAACTCGGCATTACTGGTGGAACTGTGCCTTAACCGTAAAGATGTTTGAAGTAGAAAGAAAAGGGTAGCAGCAAACCAGATGGGAGGTTTCAGTTATGGATCATCCTCACCTTTCAATGCCTGCTTATGATTAGTTATAGTTCTCTTAAAGTTTCATTGTTTAGGAAGTTTATAATGGTAATGCTTTGTTCTTCCTCCCAAAAACTGAATTCCACACTCCCTCTCTGGTTTAATGCTTTGTTCTGTTGCTTTTGTTAGGTGGAGTTTATTGGCTTAATGCGTCTCTACAGCTACTTTATGTTCTTTGTTCCATTTCCTCACACTAACGTGTCCATTGGTAGTTTGTTCTTTGTTTCATTTCATTTCAATATAGTTATTAAAACAACATACAAATTATGAATGTAAGTATAAATTTTAGAACACATCAGCATCCCAATCGAACGTGCTTAGCACTCGATCCAAAGCCAAACGCAGTCTACCGGGCCATGAACAAGCTAATTTATTCCAAACACAAGAACAAGCTAATCTGGAAATGTTACATTTCAATCAAAAGGAACACAAAAATACACAACCAAAACGAGGGAAGGGAGGGAGTGAGTGAGCAAAGAAGCCGCGGATTAGGACCTCTTCCTCTTCAAGAACCTCATATTGCTCATCTGAACCTACATATTTAG

mRNA sequence

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGTTTAATCAGGGAAGGGCTTAGAGTAGTTGCTGCTAGACAGACTACTGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTCGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAATTGGGACAAGGAAACAGAACCGTGACTGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTTTGTCAAAGAAAAGGGTAGCAGCAAACCAGATGGGAGGTTTCAGTTATGGATCATCCTCACCTTTCAATGCCTGCTTATGATTAGTTATAGTTCTCTTAAAGTTTCATTGTTTAGGAAGTTTATAATGGTGGAGTTTATTGGCTTAATGCGTCTCTACAGCTACTTTATGTTCTTTGTTCCATTTCCTCACACTAACGTGTCCATTGCACTCGATCCAAAGCCAAACGCAGTCTACCGGGCCATGAACAAGCTAATTTATTCCAAACACAAGAACAAGCTAATCTGGAAATGTTACATTTCAATCAAAAGGAACACAAAAATACACAACCAAAACGAGGGAAGGGAGGGAGTGAGTGAGCAAAGAAGCCGCGGATTAGGACCTCTTCCTCTTCAAGAACCTCATATTGCTCATCTGAACCTACATATTTAG

Coding sequence (CDS)

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGTTTAATCAGGGAAGGGCTTAGAGTAGTTGCTGCTAGACAGACTACTGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTCGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAATTGGGACAAGGAAACAGAACCGTGACTGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTTTGTCAAAGAAAAGGGTAGCAGCAAACCAGATGGGAGGTTTCAGTTATGGATCATCCTCACCTTTCAATGCCTGCTTATGATTAGTTATAGTTCTCTTAAAGTTTCATTGTTTAGGAAGTTTATAATGGTGGAGTTTATTGGCTTAATGCGTCTCTACAGCTACTTTATGTTCTTTGTTCCATTTCCTCACACTAACGTGTCCATTGCACTCGATCCAAAGCCAAACGCAGTCTACCGGGCCATGAACAAGCTAATTTATTCCAAACACAAGAACAAGCTAATCTGGAAATGTTACATTTCAATCAAAAGGAACACAAAAATACACAACCAAAACGAGGGAAGGGAGGGAGTGAGTGAGCAAAGAAGCCGCGGATTAGGACCTCTTCCTCTTCAAGAACCTCATATTGCTCATCTGAACCTACATATTTAG

Protein sequence

MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTTEEHNSKFNQFFVCCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSSLKHEKHRELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYFVKEKGSSKPDGRFQLWIILTFQCLLMISYSSLKVSLFRKFIMVEFIGLMRLYSYFMFFVPFPHTNVSIALDPKPNAVYRAMNKLIYSKHKNKLIWKCYISIKRNTKIHNQNEGREGVSEQRSRGLGPLPLQEPHIAHLNLHI

Homology

[Close]

BLAST of CmaCh16G004970 vs. TrEMBL
Match: A0A0A0L042_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056700 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.9e-42
Identity = 99/201 (49.25%), Postives = 125/201 (62.19%), Query Frame = 1


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTTEEHNSKFNQFFVC------- 60
           +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT EE  +K + FF C       
Sbjct: 20  VKTNDRLVAAEPSVNLGNVYDEICNLVSE-MRIIAAKQTDEERTNKSSMFFACEPPSFGE 79

Query: 61  ----------------CSDEQKVS------FACLRLKDSALSWWIVSKRYLNADGAAVTW 120
                             D  + S      FACLRLKD+A SWW+V    L ADG  VTW
Sbjct: 80  DTDPLVAQRWILILENIFDLIRCSDEHKVSFACLRLKDAAFSWWMVMHTDLEADGVTVTW 139

Query: 121 EKFKDLFYKRYFPSSLKHEKHRELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEAR 173
           +KFK+LF KRY PS LK EK REL  L QG+ TV EYDE+FI L+SL  E  PD++ EAR
Sbjct: 140 QKFKELFEKRYLPSWLKLEKFRELCNLEQGDGTVAEYDEQFIKLASLAHEFIPDEAWEAR 199

[Close]

BLAST of CmaCh16G004970 vs. TrEMBL
Match: Q8RU68_ORYSA (Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 54  CSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSSLKHEKHR 113
           C+D++K+ +A   L+ SA  WW   K+  + +   +TWE FK+ FYK+YFP S+K  K +
Sbjct: 107 CTDKEKIIYATYMLQSSAFEWWDAHKKSYS-ERIFITWELFKEAFYKKYFPESVKRMKEK 166

Query: 114 ELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQL 166
           E  +L QGN++V EY+ EF  L+    E    D  +AR F  GLR  + R++
Sbjct: 167 EFLELKQGNKSVAEYEIEFSRLARFAPEFVQTDGSKARRFESGLRQPLKRRV 217

[Close]

BLAST of CmaCh16G004970 vs. TrEMBL
Match: Q7G6A5_ORYSJ (Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa subsp. japonica GN=OSJNAb0075K12.33 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 54  CSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSSLKHEKHR 113
           C+D++K+ +A   L+ SA  WW   K+  + +   +TWE FK+ FYK+YFP S+K  K +
Sbjct: 107 CTDKEKIIYATYMLQSSAFEWWDAHKKSYS-ERIFITWELFKEAFYKKYFPESVKRMKEK 166

Query: 114 ELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQL 166
           E  +L QGN++V EY+ EF  L+    E    D  +AR F  GLR  + R++
Sbjct: 167 EFLELKQGNKSVAEYEIEFSRLARFAPEFVQTDGSKARRFESGLRQPLKRRV 217

[Close]

BLAST of CmaCh16G004970 vs. TrEMBL
Match: C7J7N6_ORYSJ (Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 54  CSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSSLKHEKHR 113
           C+D++K+ +A   L+ SA  WW   K+  + +   +TWE FK+ FYK+YFP S+K  K +
Sbjct: 195 CTDKEKIIYATYMLQSSAFEWWDAHKKSYS-ERIFITWELFKEAFYKKYFPESVKRMKEK 254

Query: 114 ELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQL 166
           E  +L QGN++V EY+ EF  L+    E    D  +AR F  GLR  + R++
Sbjct: 255 EFLELKQGNKSVAEYEIEFSRLARFAPEFVQTDGSKARRFESGLRQPLKRRV 305

[Close]

BLAST of CmaCh16G004970 vs. TrEMBL
Match: A5C9U3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010121 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-15
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 1


Query: 46  KFNQFF--VCCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYF 105
           K  +FF  + CS+EQK S+A   L   A  WW +++R L   G  +TW +F++ FYK+YF
Sbjct: 579 KMEKFFGVIDCSEEQKASYAAFMLDKEAYHWWRMTRRLLEDQGP-ITWRQFREAFYKKYF 638

Query: 106 PSSLKHEKHRELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISR 165
           P S++ +K  E  +L QG+  V +Y+ +F  LS    +L   +  +A  F +GL+P +  
Sbjct: 639 PDSVRWQKVGEFIRLEQGDMIVAQYEAKFTELSCFSPQLIAIEEEKALKFQDGLKPYLKN 698

Query: 166 QLCFTDNVSYFVKEKGSSKPDGR 187
           ++     V Y     G+    G+
Sbjct: 699 KISILKLVVYSENLDGACPTCGK 720

[Close]

BLAST of CmaCh16G004970 vs. NCBI nr
Match: gi|659101972|ref|XP_008451886.1| (PREDICTED: uncharacterized protein LOC103493045 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 6.4e-43
Identity = 101/202 (50.00%), Postives = 128/202 (63.37%), Query Frame = 1


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTTEEHNSKFNQFFVC------- 60
           +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT EE ++K + FF C       
Sbjct: 11  VKTNNHLVAAEPSVNLGNVYDEICNLVSE-VRIIAAKQTDEERSNKSSMFFACEPPSFGE 70

Query: 61  ----------------CSDEQKVS------FACLRLKDSALSWWIVSKRYLNADGAAVTW 120
                             D  + S      FA LRLKD+A SWW+V    L ADG  VTW
Sbjct: 71  DTDPLVAQRWILILENIFDLIRCSDKQKVSFASLRLKDAAFSWWMVLHTDLEADGVTVTW 130

Query: 121 EKFKDLFYKRYFPSSLKHEKHRELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEAR 174
           EKFK+LF KRY P  LK EK REL  L QG+ TV EYDE+FI L+SL  E  PD++ EAR
Sbjct: 131 EKFKELFEKRYLPRWLKLEKFRELCNLEQGDGTVAEYDEQFIKLASLAHEFIPDEAWEAR 190

[Close]

BLAST of CmaCh16G004970 vs. NCBI nr
Match: gi|449459990|ref|XP_004147729.1| (PREDICTED: uncharacterized protein LOC101209793 isoform X1 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 7.1e-42
Identity = 99/201 (49.25%), Postives = 125/201 (62.19%), Query Frame = 1


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTTEEHNSKFNQFFVC------- 60
           +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT EE  +K + FF C       
Sbjct: 20  VKTNDRLVAAEPSVNLGNVYDEICNLVSE-MRIIAAKQTDEERTNKSSMFFACEPPSFGE 79

Query: 61  ----------------CSDEQKVS------FACLRLKDSALSWWIVSKRYLNADGAAVTW 120
                             D  + S      FACLRLKD+A SWW+V    L ADG  VTW
Sbjct: 80  DTDPLVAQRWILILENIFDLIRCSDEHKVSFACLRLKDAAFSWWMVMHTDLEADGVTVTW 139

Query: 121 EKFKDLFYKRYFPSSLKHEKHRELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEAR 173
           +KFK+LF KRY PS LK EK REL  L QG+ TV EYDE+FI L+SL  E  PD++ EAR
Sbjct: 140 QKFKELFEKRYLPSWLKLEKFRELCNLEQGDGTVAEYDEQFIKLASLAHEFIPDEAWEAR 199

[Close]

BLAST of CmaCh16G004970 vs. NCBI nr
Match: gi|778691251|ref|XP_011653248.1| (PREDICTED: uncharacterized protein LOC101209793 isoform X2 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 7.1e-42
Identity = 99/201 (49.25%), Postives = 125/201 (62.19%), Query Frame = 1


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTTEEHNSKFNQFFVC------- 60
           +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT EE  +K + FF C       
Sbjct: 11  VKTNDRLVAAEPSVNLGNVYDEICNLVSE-MRIIAAKQTDEERTNKSSMFFACEPPSFGE 70

Query: 61  ----------------CSDEQKVS------FACLRLKDSALSWWIVSKRYLNADGAAVTW 120
                             D  + S      FACLRLKD+A SWW+V    L ADG  VTW
Sbjct: 71  DTDPLVAQRWILILENIFDLIRCSDEHKVSFACLRLKDAAFSWWMVMHTDLEADGVTVTW 130

Query: 121 EKFKDLFYKRYFPSSLKHEKHRELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEAR 173
           +KFK+LF KRY PS LK EK REL  L QG+ TV EYDE+FI L+SL  E  PD++ EAR
Sbjct: 131 QKFKELFEKRYLPSWLKLEKFRELCNLEQGDGTVAEYDEQFIKLASLAHEFIPDEAWEAR 190

[Close]

BLAST of CmaCh16G004970 vs. NCBI nr
Match: gi|695044776|ref|XP_009410153.1| (PREDICTED: uncharacterized protein LOC103992242 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 99.8 bits (247), Expect = 9.3e-18
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 54  CSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSSLKHEKHR 113
           C + QKV FA   L+  A +WW   +R L A G  VTWE+FKD FY+++FP S++ EK +
Sbjct: 101 CRENQKVPFASFILEGKADTWWTSKRRMLEAGGNVVTWEQFKDAFYEQFFPDSVRFEKQQ 160

Query: 114 ELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQL 166
           E   + QGNRTV EYD  F  L+     +  ++S  AR F  GLR  I + +
Sbjct: 161 EFLSIRQGNRTVMEYDHHFTELAQFSPYIAFNESQRARHFERGLRSSIRKSV 212

[Close]

BLAST of CmaCh16G004970 vs. NCBI nr
Match: gi|18767374|gb|AAL79340.1|AC099402_4 (Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa])

HSP 1 Score: 93.2 bits (230), Expect = 8.7e-16
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 54  CSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSSLKHEKHR 113
           C+D++K+ +A   L+ SA  WW   K+  + +   +TWE FK+ FYK+YFP S+K  K +
Sbjct: 107 CTDKEKIIYATYMLQSSAFEWWDAHKKSYS-ERIFITWELFKEAFYKKYFPESVKRMKEK 166

Query: 114 ELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQL 166
           E  +L QGN++V EY+ EF  L+    E    D  +AR F  GLR  + R++
Sbjct: 167 EFLELKQGNKSVAEYEIEFSRLARFAPEFVQTDGSKARRFESGLRQPLKRRV 217

The following BLAST results are available for this feature:

BLAST of CmaCh16G004970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G004970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L042_CUCSA	4.9e-42	49.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056700 PE=4 SV=1	[more]
Q8RU68_ORYSA	6.1e-16	39.29	Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10...	[more]
Q7G6A5_ORYSJ	6.1e-16	39.29	Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa subsp. japonica ...	[more]
C7J7N6_ORYSJ	6.1e-16	39.29	Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1	[more]
A5C9U3_VITVI	3.0e-15	32.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010121 PE=4 SV=1	[more]

BLAST of CmaCh16G004970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G004970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101972\|ref\|XP_008451886.1\|	6.4e-43	50.00	PREDICTED: uncharacterized protein LOC103493045 [Cucumis melo]	[more]
gi\|449459990\|ref\|XP_004147729.1\|	7.1e-42	49.25	PREDICTED: uncharacterized protein LOC101209793 isoform X1 [Cucumis sativus]	[more]
gi\|778691251\|ref\|XP_011653248.1\|	7.1e-42	49.25	PREDICTED: uncharacterized protein LOC101209793 isoform X2 [Cucumis sativus]	[more]
gi\|695044776\|ref\|XP_009410153.1\|	9.3e-18	42.86	PREDICTED: uncharacterized protein LOC103992242 [Musa acuminata subsp. malaccens...	[more]
gi\|18767374\|gb\|AAL79340.1\|AC099402_4	8.7e-16	39.29	Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004970.1	CmaCh16G004970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 62..159 score: 9.8
None	No IPR available	unknown	Coil	Coil	coord: 314..316 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004970	Csa4G056700	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G004970	MELO3C016229	Melon (DHL92) v3.5.1	cmameB305
CmaCh16G004970	CSPI04G07030	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G004970	CmoCh16G005400	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004970	Lsi07G007860	Bottle gourd (USVL1VR-Ls)	cmalsiB325
CmaCh16G004970	CsaV3_4G007250	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G004970	CsGy4G006950	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G004970	Carg11413	Silver-seed gourd	carcmaB0924

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004970	Cucurbita moschata (Rifu)	cmacmoB340
CmaCh16G004970	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G004970	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G004970	Watermelon (97103) v1	cmawmB308
CmaCh16G004970	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004970	Cucurbita pepo (Zucchini)	cmacpeB353
CmaCh16G004970	Melon (DHL92) v3.6.1	cmamedB351
CmaCh16G004970	Melon (DHL92) v3.6.1	cmamedB356
CmaCh16G004970	Silver-seed gourd	carcmaB0052
CmaCh16G004970	Watermelon (97103) v2	cmawmbB350
CmaCh16G004970	Wax gourd	cmawgoB0437
CmaCh16G004970	Cucurbita maxima (Rimu)	cmacmaB353
CmaCh16G004970	Cucumber (Gy14) v1	cgycmaB0511