Carg11413 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11413
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cucurbita_argyrosperma_scaffold_025 : 889131 .. 889796 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGCTTAATCAGGGAAGGGCTTAGGGTAGTTGCTGCTAGACAAACTAATGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGTCAACCTCCTTGGTTTGGAGAGGATACCGGCCCCTTAGTTGCTAAACGCTGGGTTTTGGGGTTAGAGAACATCTTTGATTGCATAGGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTGGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAGTTGGGACAAAGGAAACAGAACCGTGATGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTCCGATCTTAGAAACTCGGCGTTACTGGTGGAACAGTGCCTTAACCGTAAAGATGTTTGA

mRNA sequence

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGCTTAATCAGGGAAGGGCTTAGGGTAGTTGCTGCTAGACAAACTAATGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGTCAACCTCCTTGGTTTGGAGAGGATACCGGCCCCTTAGTTGCTAAACGCTGGGTTTTGGGGTTAGAGAACATCTTTGATTGCATAGGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTGGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAGTTGGGACAAAGGAAACAGAACCGTGATGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTCCGATCTTAGAAACTCGGCGTTACTGGTGGAACAGTGCCTTAACCGTAAAGATGTTTGA

Coding sequence (CDS)

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGCTTAATCAGGGAAGGGCTTAGGGTAGTTGCTGCTAGACAAACTAATGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGTCAACCTCCTTGGTTTGGAGAGGATACCGGCCCCTTAGTTGCTAAACGCTGGGTTTTGGGGTTAGAGAACATCTTTGATTGCATAGGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTGGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAGTTGGGACAAAGGAAACAGAACCGTGATGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTCCGATCTTAGAAACTCGGCGTTACTGGTGGAACAGTGCCTTAACCGTAAAGATGTTTGA

Protein sequence

MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKDV

Homology

[Close]

BLAST of Carg11413 vs. NCBI nr
Match: XP_022931358.1 (uncharacterized protein LOC111437567 isoform X1 [Cucurbita moschata] >XP_022931359.1 uncharacterized protein LOC111437567 isoform X1 [Cucurbita moschata])

HSP 1 Score: 448.4 bits (1152), Expect = 1.5e-122
Identity = 214/221 (96.83%), Postives = 215/221 (97.29%), Query Frame = 0


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE 60
           MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE
Sbjct: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE 60

Query: 61  DTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTW 120
           DT PLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTW
Sbjct: 61  DTDPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTW 120

Query: 121 EKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEAR 180
           EKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEAR
Sbjct: 121 EKFKDLFYKRYFPSWLKHEKHRELWKLGQGNRTVIEYDEEFITLSSLVSELNPDDSLEAR 180

Query: 181 LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKDV 222
           LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKDV
Sbjct: 181 LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKDV 221

[Close]

BLAST of Carg11413 vs. NCBI nr
Match: XP_023522569.1 (uncharacterized protein LOC111786568 [Cucurbita pepo subsp. pepo] >XP_023522571.1 uncharacterized protein LOC111786568 [Cucurbita pepo subsp. pepo] >XP_023552370.1 uncharacterized protein LOC111810060 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.4 bits (1147), Expect = 5.5e-122
Identity = 213/221 (96.38%), Postives = 214/221 (96.83%), Query Frame = 0


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE 60
           MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE
Sbjct: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE 60

Query: 61  DTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTW 120
           DT PLVAKRWVLGLENIFDCIGCSDEQ VSFACLRLKDSALSWWIVSKRYLNADGAAVTW
Sbjct: 61  DTDPLVAKRWVLGLENIFDCIGCSDEQNVSFACLRLKDSALSWWIVSKRYLNADGAAVTW 120

Query: 121 EKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEAR 180
           EKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEAR
Sbjct: 121 EKFKDLFYKRYFPSWLKHEKHRELWKLGQGNRTVIEYDEEFITLSSLVSELNPDDSLEAR 180

Query: 181 LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKDV 222
           LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKDV
Sbjct: 181 LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKDV 221

[Close]

BLAST of Carg11413 vs. NCBI nr
Match: XP_022931360.1 (uncharacterized protein LOC111437567 isoform X2 [Cucurbita moschata])

HSP 1 Score: 422.5 bits (1085), Expect = 8.5e-115
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 14  MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLG 73
           MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDT PLVAKRWVLG
Sbjct: 1   MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTDPLVAKRWVLG 60

Query: 74  LENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFP 133
           LENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFP
Sbjct: 61  LENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFP 120

Query: 134 SWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQ 193
           SWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQ
Sbjct: 121 SWLKHEKHRELWKLGQGNRTVIEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQ 180

Query: 194 LCFTDNVSYSDLRNSALLVEQCLNRKDV 222
           LCFTDNVSYSDLRNSALLVEQCLNRKDV
Sbjct: 181 LCFTDNVSYSDLRNSALLVEQCLNRKDV 208

[Close]

BLAST of Carg11413 vs. NCBI nr
Match: XP_004147729.1 (PREDICTED: uncharacterized protein LOC101209793 isoform X1 [Cucumis sativus] >KGN53481.1 hypothetical protein Csa_4G056700 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 9.2e-69
Identity = 131/218 (60.09%), Postives = 165/218 (75.69%), Query Frame = 0


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE 60
           +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT+EE  +K + FF C+PP FGE
Sbjct: 20  VKTNDRLVAAEPSVNLGNVYDEICNLVSE-MRIIAAKQTDEERTNKSSMFFACEPPSFGE 79

Query: 61  DTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTW 120
           DT PLVA+RW+L LENIFD I CSDE KVSFACLRLKD+A SWW+V    L ADG  VTW
Sbjct: 80  DTDPLVAQRWILILENIFDLIRCSDEHKVSFACLRLKDAAFSWWMVMHTDLEADGVTVTW 139

Query: 121 EKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEAR 180
           +KFK+LF KRY PSWLK EK REL  L Q      EYDE+FI L+SL  E  PD++ EAR
Sbjct: 140 QKFKELFEKRYLPSWLKLEKFRELCNLEQGDGTVAEYDEQFIKLASLAHEFIPDEAWEAR 199

Query: 181 LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNR 219
           LF +GLR DI  Q+C  +N S +++RN AL+VEQ +N+
Sbjct: 200 LFGDGLRADIRGQVCLLNNASDAEIRNLALMVEQRINK 236

[Close]

BLAST of Carg11413 vs. NCBI nr
Match: XP_011653248.1 (PREDICTED: uncharacterized protein LOC101209793 isoform X2 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 9.2e-69
Identity = 131/218 (60.09%), Postives = 165/218 (75.69%), Query Frame = 0


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE 60
           +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT+EE  +K + FF C+PP FGE
Sbjct: 11  VKTNDRLVAAEPSVNLGNVYDEICNLVSE-MRIIAAKQTDEERTNKSSMFFACEPPSFGE 70

Query: 61  DTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTW 120
           DT PLVA+RW+L LENIFD I CSDE KVSFACLRLKD+A SWW+V    L ADG  VTW
Sbjct: 71  DTDPLVAQRWILILENIFDLIRCSDEHKVSFACLRLKDAAFSWWMVMHTDLEADGVTVTW 130

Query: 121 EKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEAR 180
           +KFK+LF KRY PSWLK EK REL  L Q      EYDE+FI L+SL  E  PD++ EAR
Sbjct: 131 QKFKELFEKRYLPSWLKLEKFRELCNLEQGDGTVAEYDEQFIKLASLAHEFIPDEAWEAR 190

Query: 181 LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNR 219
           LF +GLR DI  Q+C  +N S +++RN AL+VEQ +N+
Sbjct: 191 LFGDGLRADIRGQVCLLNNASDAEIRNLALMVEQRINK 227

[Close]

BLAST of Carg11413 vs. TrEMBL
Match: tr|A0A0A0L042|A0A0A0L042_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056700 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 6.1e-69
Identity = 131/218 (60.09%), Postives = 165/218 (75.69%), Query Frame = 0


Query: 1   MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGE 60
           +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT+EE  +K + FF C+PP FGE
Sbjct: 20  VKTNDRLVAAEPSVNLGNVYDEICNLVSE-MRIIAAKQTDEERTNKSSMFFACEPPSFGE 79

Query: 61  DTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTW 120
           DT PLVA+RW+L LENIFD I CSDE KVSFACLRLKD+A SWW+V    L ADG  VTW
Sbjct: 80  DTDPLVAQRWILILENIFDLIRCSDEHKVSFACLRLKDAAFSWWMVMHTDLEADGVTVTW 139

Query: 121 EKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEAR 180
           +KFK+LF KRY PSWLK EK REL  L Q      EYDE+FI L+SL  E  PD++ EAR
Sbjct: 140 QKFKELFEKRYLPSWLKLEKFRELCNLEQGDGTVAEYDEQFIKLASLAHEFIPDEAWEAR 199

Query: 181 LFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNR 219
           LF +GLR DI  Q+C  +N S +++RN AL+VEQ +N+
Sbjct: 200 LFGDGLRADIRGQVCLLNNASDAEIRNLALMVEQRINK 236

[Close]

BLAST of Carg11413 vs. TrEMBL
Match: tr|A0A2N9GK13|A0A2N9GK13_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27834 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.6e-27
Identity = 66/188 (35.11%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 30  GLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKV 89
           G  V    +  + H S   +F    PP F   T PLVA++W+  +E  F  + C++E+KV
Sbjct: 71  GNNVARMMEQRQGHQSNMTEFKRLTPPSFEGSTEPLVAEKWLTEMEKAFRVLRCTEEEKV 130

Query: 90  SFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ 149
           ++A   L+  A  WW + +   N D    TWE FK  FY++YFP+ ++ +K RE  KL Q
Sbjct: 131 NYATYMLQGDAYDWWRMEEEKHNHDPEPYTWEMFKAAFYEKYFPTSVRRQKEREFIKLEQ 190

Query: 150 RKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSA 209
                 +Y+ EF  L+     L  D+  +AR F EGLRP I   +   +  +Y  + N A
Sbjct: 191 GNMTVSQYEAEFARLARFAPTLVADEDSKARRFEEGLRPRIKTSVIAFELTTYRAVVNKA 250

Query: 210 LLVEQCLN 218
           LL+E+ LN
Sbjct: 251 LLIERGLN 258

[Close]

BLAST of Carg11413 vs. TrEMBL
Match: tr|A0A2N9ETJ6|A0A2N9ETJ6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6080 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.6e-27
Identity = 66/188 (35.11%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 30  GLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKV 89
           G  V    +  + H S   +F    PP F   T PLVA++W+  +E  F  + C++E+KV
Sbjct: 71  GNNVARMMEQRQGHQSNMTEFKRLTPPSFEGSTEPLVAEKWLTEMEKAFRVLRCTEEEKV 130

Query: 90  SFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ 149
           ++A   L+  A  WW + +   N D    TWE FK  FY++YFP+ ++ +K RE  KL Q
Sbjct: 131 NYATYMLQGDAYDWWRMEEEKHNHDPEPYTWEMFKAAFYEKYFPTSVRRQKEREFIKLEQ 190

Query: 150 RKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSA 209
                 +Y+ EF  L+     L  D+  +AR F EGLRP I   +   +  +Y  + N A
Sbjct: 191 GNMTVSQYEAEFARLARFAPTLVADEDSKARRFEEGLRPRIKTSVIAFELTTYRAVVNKA 250

Query: 210 LLVEQCLN 218
           LL+E+ LN
Sbjct: 251 LLIERGLN 258

[Close]

BLAST of Carg11413 vs. TrEMBL
Match: tr|A0A2N9EXT8|A0A2N9EXT8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11439 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.6e-27
Identity = 66/188 (35.11%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 30  GLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKV 89
           G  V    +  + H S   +F    PP F   T PLVA++W+  +E  F  + C++E+KV
Sbjct: 71  GNNVARMMEQRQGHQSNMTEFKRLTPPSFEGSTEPLVAEKWLTEMEKAFRVLRCTEEEKV 130

Query: 90  SFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ 149
           ++A   L+  A  WW + +   N D    TWE FK  FY++YFP+ ++ +K RE  KL Q
Sbjct: 131 NYATYMLQGDAYDWWRMEEEKHNHDPEPYTWEMFKAAFYEKYFPTSVRRQKEREFIKLEQ 190

Query: 150 RKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSA 209
                 +Y+ EF  L+     L  D+  +AR F EGLRP I   +   +  +Y  + N A
Sbjct: 191 GNMTVSQYEAEFARLARFAPTLVADEDSKARRFEEGLRPRIKTSVIAFELTTYRAVVNKA 250

Query: 210 LLVEQCLN 218
           LL+E+ LN
Sbjct: 251 LLIERGLN 258

[Close]

BLAST of Carg11413 vs. TrEMBL
Match: tr|A0A2N9GT10|A0A2N9GT10_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30704 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 66/188 (35.11%), Postives = 100/188 (53.19%), Query Frame = 0


Query: 30  GLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKV 89
           G  V    + ++ H S   +F    PP F   T PLVA++W+  +E  F  + C++E+KV
Sbjct: 88  GNNVARMMEQHQGHQSNMTEFKRLTPPSFEGSTKPLVAEKWLTEMEKAFKVLRCTEEEKV 147

Query: 90  SFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ 149
           ++A   L+  A  WW + +   N D    TWE FK  FY++YFP+ ++ +K RE  KL Q
Sbjct: 148 NYATYMLQGDAYDWWRMEEEKHNQDLEPYTWEMFKAAFYEKYFPTSVRLQKEREFIKLEQ 207

Query: 150 RKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSA 209
                 +Y+ EF  L+     L  D+  +AR F EGLRP I   +   +  +Y  + N A
Sbjct: 208 GNMTVSQYEAEFARLARFAPTLVADEDSKARRFEEGLRPRIKTSVIAFELTTYRAVVNKA 267

Query: 210 LLVEQCLN 218
           LL+E+ LN
Sbjct: 268 LLIERGLN 275

The following BLAST results are available for this feature:

BLAST of Carg11413 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931358.1	1.5e-122	96.83	uncharacterized protein LOC111437567 isoform X1 [Cucurbita moschata] >XP_0229313...	[more]
XP_023522569.1	5.5e-122	96.38	uncharacterized protein LOC111786568 [Cucurbita pepo subsp. pepo] >XP_023522571....	[more]
XP_022931360.1	8.5e-115	96.63	uncharacterized protein LOC111437567 isoform X2 [Cucurbita moschata]	[more]
XP_004147729.1	9.2e-69	60.09	PREDICTED: uncharacterized protein LOC101209793 isoform X1 [Cucumis sativus] >KG...	[more]
XP_011653248.1	9.2e-69	60.09	PREDICTED: uncharacterized protein LOC101209793 isoform X2 [Cucumis sativus]	[more]

BLAST of Carg11413 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11413 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11413 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L042\|A0A0A0L042_CUCSA	6.1e-69	60.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056700 PE=4 SV=1	[more]
tr\|A0A2N9GK13\|A0A2N9GK13_FAGSY	7.6e-27	35.11	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27834 PE=4 SV=1	[more]
tr\|A0A2N9ETJ6\|A0A2N9ETJ6_FAGSY	7.6e-27	35.11	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6080 PE=4 SV=1	[more]
tr\|A0A2N9EXT8\|A0A2N9EXT8_FAGSY	7.6e-27	35.11	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11439 PE=4 SV=1	[more]
tr\|A0A2N9GT10\|A0A2N9GT10_FAGSY	1.3e-26	35.11	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30704 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11413-RA	Carg11413-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 91..188 e-value: 3.4E-12 score: 46.4
None	No IPR available	PANTHER	PTHR34482	FAMILY NOT NAMED	coord: 65..205

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11413	Csa4G056700	Cucumber (Chinese Long) v2	carcuB0677
Carg11413	MELO3C016229	Melon (DHL92) v3.5.1	carmeB0653
Carg11413	CSPI04G07030	Wild cucumber (PI 183967)	carcpiB0687
Carg11413	CmaCh16G004970	Cucurbita maxima (Rimu)	carcmaB0924
Carg11413	CmoCh16G005400	Cucurbita moschata (Rifu)	carcmoB0898
Carg11413	Lsi07G007860	Bottle gourd (USVL1VR-Ls)	carlsiB596
Carg11413	CsGy4G006950	Cucumber (Gy14) v2	carcgybB0652
Carg11413	CsaV3_4G007250	Cucumber (Chinese Long) v3	carcucB0689

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11413	Silver-seed gourd	carcarB050
Carg11413	Silver-seed gourd	carcarB052
Carg11413	Cucumber (Gy14) v1	carcgyB0732
Carg11413	Cucurbita maxima (Rimu)	carcmaB0927
Carg11413	Cucurbita moschata (Rifu)	carcmoB0902
Carg11413	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11413	Cucurbita pepo (Zucchini)	carcpeB0929
Carg11413	Melon (DHL92) v3.5.1	carmeB0652
Carg11413	Melon (DHL92) v3.6.1	carmedB0662
Carg11413	Melon (DHL92) v3.6.1	carmedB0664
Carg11413	Watermelon (Charleston Gray)	carwcgB0637
Carg11413	Watermelon (97103) v1	carwmB0652
Carg11413	Watermelon (97103) v2	carwmbB0682
Carg11413	Wax gourd	carwgoB0770