CmaCh16G003160 (gene) Cucurbita maxima (Rimu)

NameCmaCh16G003160
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCyclin-related, putative isoform 1
LocationCma_Chr16 : 1499903 .. 1502133 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGGTACCTTACCTCTCTTTGTCTGATTGTATTTCCATTTCTTTAAGTTCATTGACTTTTGTTCGGTTTCAATGGATTATCTTTGTGTTAGCTTCCATTAAGCTTCCGGAATTTCCATAATTTTGCCCCAGTATGCTAGAGAGTCGGCGTGCGTGAAATTTGTTGATGATGTTTGCTTTGATGTTGTCGTATTTCAAGCTTCAAGTTACGTAGAACATGTATTTTGATTGTTACCAAAGAAATGACTCAACAATTGCTTTTGCAATGCGCAGTCTAGTAGTGCTTATGTCTATTAGTTCTAGTTTCAAATTACTTCATGGTTATTGATGGCTACTCAGTACCACCCCATTGTTATCAGCCCTGCATTATGCCTATTCAGTTTCCTCTAATTCCAAAACGCTCTAAACAAATATTAATTTTCAATTTTTTGCTTAGTCAAAAGTGAGGGCTATGAAGAGAAATGCATTACCATATTTGGATATTGCAGCAATAAGATGGCTTCATTCTTTTCCTTCCAATTGAATCAAAACAATACTTAAGATAGAATAAGTGATTAATGTGTTTCAAGTATTATGTTATACTTAATCATGGAACTCTAGTATGACATGAATATGTGGCTTATTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGTTTGTGCTAAATTAAAGATTGTTTTTCAATTAATTTTGATAATTTCTTCCTTAGTTTTTGAAAAATTAACATTAGTCTAGTTTGTTTGTCCTAAATTTCATGGTTTTATTGGCAGCATCTTAATGCTCAGTTGGTATTGGTTTTTTACTTCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACCCACCCACACTATGATACATAACAAGGCTGGAAGCTTCAAAACATTGTGTATTTTTATGGCTGAATTTTGCTGTAATTGCTATTATTCATTGCTTCTTTTCATATGAGCTGCTGAAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC

mRNA sequence

ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC

Coding sequence (CDS)

ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAA

Protein sequence

MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRSYFQGDCCKIWA
BLAST of CmaCh16G003160 vs. TrEMBL
Match: A0A0A0KV12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000750 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 86/125 (68.80%), Postives = 93/125 (74.40%), Query Frame = 1

Query: 1   MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
           MSRRE RESDS RHRSRFD EPS          +  K  +  + EKLSRNSSSHVEDNK+
Sbjct: 1   MSRREARESDSKRHRSRFDREPS---------PKRSKRDRKTLEEKLSRNSSSHVEDNKE 60

Query: 61  RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
           RDQKH L+  GQDMIPHE S AL+SKPE G   G NRNSD RDGGTKHS+NPTEVPRSRS
Sbjct: 61  RDQKHELRLVGQDMIPHESSLALESKPEGGAGIGANRNSDGRDGGTKHSVNPTEVPRSRS 116

Query: 121 YFQGD 126
           YFQ D
Sbjct: 121 YFQHD 116

BLAST of CmaCh16G003160 vs. TrEMBL
Match: W9SX05_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003671 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 58/125 (46.40%), Postives = 71/125 (56.80%), Query Frame = 1

Query: 2   SRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKDR 61
           SRRE R+SDS RHRSRFD EPS        P +  ++G+       SRN+S    +  D+
Sbjct: 3   SRREGRDSDSKRHRSRFDREPS--------PKRSRRDGKPAPERVPSRNNSLDSRNQTDQ 62

Query: 62  DQKHGLQHEGQDMIPHECSSALDSKPEYGV-SKGVNRNSDRRDGGTKHSMNPTEVPRSRS 121
           DQKHG + +    +P E   A DSK E G  S   +R S  R  GTKHS NP+E  RSRS
Sbjct: 63  DQKHGRRAQ-DGGLPLETPLATDSKLERGAPSNEPDRKSSGRHEGTKHSSNPSEASRSRS 118

Query: 122 YFQGD 126
           YFQ D
Sbjct: 123 YFQHD 118

BLAST of CmaCh16G003160 vs. TrEMBL
Match: M5VL67_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008588mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.1e-11
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1

Query: 1   MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
           MSRR+ R+SDS RHRSRFD EPS        P +  ++G+   +E+++   +S      D
Sbjct: 1   MSRRDSRDSDSRRHRSRFDREPS--------PKRSRRDGKDE-KERVTSKINSESAKQSD 60

Query: 61  RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDG----GTKHSMNPTEVP 120
           +DQKH  Q   QD +P E   A DS+ E G S+   + SD++      GTK S +PT+VP
Sbjct: 61  QDQKH--QPRLQDTLPLESPLATDSRVENGASR---KESDKKPSGHLEGTKLSSDPTDVP 115

Query: 121 RSRSYFQGD 126
           RS+SYFQ D
Sbjct: 121 RSQSYFQHD 115

BLAST of CmaCh16G003160 vs. TrEMBL
Match: B9SNE9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175730 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 1

Query: 1   MSRRE--IRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDN 60
           MSRRE   R+SDS RHRS FD EPS        P +  ++G+    E++   ++ +VED+
Sbjct: 1   MSRRERDYRDSDSRRHRSGFDREPS--------PKRSRRDGKPET-ERVPSYTNLNVEDS 60

Query: 61  KDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV-SKGVNRNSDRRDGGTKHSMNPTEVPR 120
            DRDQ+H  +    D +P E  SA DSK E GV SK   +  +    GTK S +P +VPR
Sbjct: 61  TDRDQRH--RRRLHDALPLEAPSAPDSKVEAGVLSKDSEKKPNGDHEGTKRSSDPIDVPR 117

Query: 121 SRSYFQGD 126
           SRSYFQ D
Sbjct: 121 SRSYFQHD 117

BLAST of CmaCh16G003160 vs. TrEMBL
Match: A0A067L7Q2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16329 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 58/128 (45.31%), Postives = 73/128 (57.03%), Query Frame = 1

Query: 1   MSRREI--RESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDN 60
           MSRRE   R+SDS R RS FD EPS        P +  ++G+       S+ +   VED+
Sbjct: 1   MSRRERDDRDSDSRRRRSGFDREPS--------PKKSRRDGKPETGRVTSKTNLD-VEDH 60

Query: 61  KDRDQKHGLQHEGQDMIPHECSSALDSKPEYG-VSKGVNRNSDRRDGGTKHSMNPTEVPR 120
            DRDQKH  +   QD +P E  SA D K E G VSK   + ++    G+KH  +PTEVPR
Sbjct: 61  TDRDQKH--RRRLQDALPLEAPSAPDPKSESGAVSKESEKKTNGHHEGSKHFSDPTEVPR 117

Query: 121 SRSYFQGD 126
           SRSYFQ D
Sbjct: 121 SRSYFQHD 117

BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|449469140|ref|XP_004152279.1| (PREDICTED: uncharacterized protein LOC101213709 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-34
Identity = 86/125 (68.80%), Postives = 93/125 (74.40%), Query Frame = 1

Query: 1   MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
           MSRRE RESDS RHRSRFD EPS          +  K  +  + EKLSRNSSSHVEDNK+
Sbjct: 1   MSRREARESDSKRHRSRFDREPS---------PKRSKRDRKTLEEKLSRNSSSHVEDNKE 60

Query: 61  RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
           RDQKH L+  GQDMIPHE S AL+SKPE G   G NRNSD RDGGTKHS+NPTEVPRSRS
Sbjct: 61  RDQKHELRLVGQDMIPHESSLALESKPEGGAGIGANRNSDGRDGGTKHSVNPTEVPRSRS 116

Query: 121 YFQGD 126
           YFQ D
Sbjct: 121 YFQHD 116

BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|659108809|ref|XP_008454399.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 9.5e-33
Identity = 84/125 (67.20%), Postives = 91/125 (72.80%), Query Frame = 1

Query: 1   MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
           MSRRE RESDS RHRSRFD EPS          +  K  +  + EKLSRNSSS VEDNKD
Sbjct: 1   MSRREARESDSKRHRSRFDREPS---------PKRSKRDRKTLEEKLSRNSSSLVEDNKD 60

Query: 61  RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRS 120
           RDQKH L+  GQDMIPHE S AL+SKPE G   G NR+SD RDGGTKHS+NP EVPRSRS
Sbjct: 61  RDQKHELRLVGQDMIPHESSLALESKPEGGAGTGANRSSDGRDGGTKHSVNPNEVPRSRS 116

Query: 121 YFQGD 126
           YFQ D
Sbjct: 121 YFQHD 116

BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|1009166464|ref|XP_015901605.1| (PREDICTED: uncharacterized protein LOC107434636 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1

Query: 1   MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
           MSRRE R+SDS RHRSRFD EPS        P +  ++G+    E+L  NS+    ++ D
Sbjct: 1   MSRREDRDSDSKRHRSRFDREPS--------PKRSRRDGKP-APERLPSNSNLDFRNHTD 60

Query: 61  RDQKHGLQHEGQDMIPHECSSALDSKPEYG-VSKGVNRNSDRRDGGTKHSMNPTEVPRSR 120
           +DQKH  + + QD +P   S   D++ + G V+K  +R S+  + GTKHS NPTEVPRSR
Sbjct: 61  QDQKH--RRQLQDGLPLGSSLTSDARLDKGAVTKEPDRKSNGLEEGTKHSSNPTEVPRSR 115

Query: 121 SYFQGD 126
           SYFQ D
Sbjct: 121 SYFQHD 115

BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|1009149711|ref|XP_015892624.1| (PREDICTED: uncharacterized protein LOC107426841 [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 8.3e-13
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 1

Query: 1   MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
           MSRRE R+SDS RHRSRFD EPS        P +  ++G+    E+L  NS+    ++ D
Sbjct: 1   MSRREDRDSDSKRHRSRFDKEPS--------PKRSRRDGKP-APERLPSNSNLDFRNHTD 60

Query: 61  RDQKHGLQHEGQDMIPHECSSALDSKPEYG-VSKGVNRNSDRRDGGTKHSMNPTEVPRSR 120
           +DQK+  + + QD +P   S   D++ + G V+K  +R S+  + GTKHS NPTEVPRSR
Sbjct: 61  QDQKY--RRQLQDGLPLGSSLTSDARLDKGAVTKEPDRKSNGLEEGTKHSSNPTEVPRSR 115

Query: 121 SYFQGD 126
           SYFQ D
Sbjct: 121 SYFQHD 115

BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|645261495|ref|XP_008236319.1| (PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform X2 [Prunus mume])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 1

Query: 1   MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKD 60
           MSRR+ R+SDS RHRSRFD EPS        P +  ++G+   +E+++  S+S      D
Sbjct: 1   MSRRDSRDSDSRRHRSRFDREPS--------PKRSRRDGKDE-KERVTSKSNSESAKQSD 60

Query: 61  RDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDG----GTKHSMNPTEVP 120
           +DQKH  Q   QD +P E   A DSK E G S+   + SD++      GTK S +PT+VP
Sbjct: 61  QDQKH--QPRLQDTLPLESPLATDSKVENGASR---KESDKKPSGHLEGTKLSSDPTDVP 115

Query: 121 RSRSYFQGD 126
           RSRSYFQ D
Sbjct: 121 RSRSYFQHD 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KV12_CUCSA1.2e-3468.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000750 PE=4 SV=1[more]
W9SX05_9ROSA2.9e-1246.40Uncharacterized protein OS=Morus notabilis GN=L484_003671 PE=4 SV=1[more]
M5VL67_PRUPE7.1e-1142.64Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008588mg PE=4 SV=1[more]
B9SNE9_RICCO1.2e-1044.53Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175730 PE=4 SV=1[more]
A0A067L7Q2_JATCU1.6e-1045.31Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16329 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449469140|ref|XP_004152279.1|1.7e-3468.80PREDICTED: uncharacterized protein LOC101213709 [Cucumis sativus][more]
gi|659108809|ref|XP_008454399.1|9.5e-3367.20PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo][more]
gi|1009166464|ref|XP_015901605.1|1.7e-1346.83PREDICTED: uncharacterized protein LOC107434636 isoform X1 [Ziziphus jujuba][more]
gi|1009149711|ref|XP_015892624.1|8.3e-1346.03PREDICTED: uncharacterized protein LOC107426841 [Ziziphus jujuba][more]
gi|645261495|ref|XP_008236319.1|3.2e-1244.96PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform X2 [Prunus mume][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G003160.1CmaCh16G003160.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh16G003160CmaCh04G004490Cucurbita maxima (Rimu)cmacmaB351