CmaCh16G003160 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGGTACCTTACCTCTCTTTGTCTGATTGTATTTCCATTTCTTTAAGTTCATTGACTTTTGTTCGGTTTCAATGGATTATCTTTGTGTTAGCTTCCATTAAGCTTCCGGAATTTCCATAATTTTGCCCCAGTATGCTAGAGAGTCGGCGTGCGTGAAATTTGTTGATGATGTTTGCTTTGATGTTGTCGTATTTCAAGCTTCAAGTTACGTAGAACATGTATTTTGATTGTTACCAAAGAAATGACTCAACAATTGCTTTTGCAATGCGCAGTCTAGTAGTGCTTATGTCTATTAGTTCTAGTTTCAAATTACTTCATGGTTATTGATGGCTACTCAGTACCACCCCATTGTTATCAGCCCTGCATTATGCCTATTCAGTTTCCTCTAATTCCAAAACGCTCTAAACAAATATTAATTTTCAATTTTTTGCTTAGTCAAAAGTGAGGGCTATGAAGAGAAATGCATTACCATATTTGGATATTGCAGCAATAAGATGGCTTCATTCTTTTCCTTCCAATTGAATCAAAACAATACTTAAGATAGAATAAGTGATTAATGTGTTTCAAGTATTATGTTATACTTAATCATGGAACTCTAGTATGACATGAATATGTGGCTTATTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGTTTGTGCTAAATTAAAGATTGTTTTTCAATTAATTTTGATAATTTCTTCCTTAGTTTTTGAAAAATTAACATTAGTCTAGTTTGTTTGTCCTAAATTTCATGGTTTTATTGGCAGCATCTTAATGCTCAGTTGGTATTGGTTTTTTACTTCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACCCACCCACACTATGATACATAACAAGGCTGGAAGCTTCAAAACATTGTGTATTTTTATGGCTGAATTTTGCTGTAATTGCTATTATTCATTGCTTCTTTTCATATGAGCTGCTGAAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTGCCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATACAAGTGTTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTGAAGAGCCTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTATCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTAACATTTTGCTGGGCTGATGTTATTGGAATCTTCTTCATCCCTGTGCCTTCAAGTGCATCCTTGTATATTACTTAGGCTTGCCTGCGCATGTCTTATAACAGCATGTCAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTCTCTCTTGTTACACGCCATGATTACAGTTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACTTTGATCAAAGCTATTGCGC ATGTCGCGTCGTGAAATTCGGGAATCCGACTCCAATCGCCATCGTTCCAGATTCGATGGAGAACCCAGCTTCCGGAATTTCCATAATTTTGCCCCATCCCAAGAGGTCAAGGAGGGACAGGGAAACATTAGAGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGTAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTATTTTCAGGGAGACTGCTGCAAAATATGGGCATAA MSRREIRESDSNRHRSRFDGEPSFRNFHNFAPSQEVKEGQGNIREKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGVNRNSDRRDGGTKHSMNPTEVPRSRSYFQGDCCKIWA
BLAST of CmaCh16G003160 vs. TrEMBL
Match: A0A0A0KV12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000750 PE=4 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34 Identity = 86/125 (68.80%), Postives = 93/125 (74.40%), Query Frame = 1
BLAST of CmaCh16G003160 vs. TrEMBL
Match: W9SX05_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003671 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12 Identity = 58/125 (46.40%), Postives = 71/125 (56.80%), Query Frame = 1
BLAST of CmaCh16G003160 vs. TrEMBL
Match: M5VL67_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008588mg PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 7.1e-11 Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1
BLAST of CmaCh16G003160 vs. TrEMBL
Match: B9SNE9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175730 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10 Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 1
BLAST of CmaCh16G003160 vs. TrEMBL
Match: A0A067L7Q2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16329 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10 Identity = 58/128 (45.31%), Postives = 73/128 (57.03%), Query Frame = 1
BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|449469140|ref|XP_004152279.1| (PREDICTED: uncharacterized protein LOC101213709 [Cucumis sativus]) HSP 1 Score: 154.1 bits (388), Expect = 1.7e-34 Identity = 86/125 (68.80%), Postives = 93/125 (74.40%), Query Frame = 1
BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|659108809|ref|XP_008454399.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo]) HSP 1 Score: 148.3 bits (373), Expect = 9.5e-33 Identity = 84/125 (67.20%), Postives = 91/125 (72.80%), Query Frame = 1
BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|1009166464|ref|XP_015901605.1| (PREDICTED: uncharacterized protein LOC107434636 isoform X1 [Ziziphus jujuba]) HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13 Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1
BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|1009149711|ref|XP_015892624.1| (PREDICTED: uncharacterized protein LOC107426841 [Ziziphus jujuba]) HSP 1 Score: 82.0 bits (201), Expect = 8.3e-13 Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 1
BLAST of CmaCh16G003160 vs. NCBI nr
Match: gi|645261495|ref|XP_008236319.1| (PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform X2 [Prunus mume]) HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12 Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |