Carg19690 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19690
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cyclin-related, putative isoform 1
Location	Cucurbita_argyrosperma_scaffold_133 : 165056 .. 166869 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTCTGGTATGACATGAATATGTGGCTTACTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGAAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTGTTTTCAGGTTTGTACTAAATTAAAGATTGTTTTTCAATTAATTTTGATAATTTCTTCCTTAGTTTTTGAAAAATTAACATTAATCTAGTTTGTTTGTCCTAAATTTCATGGTTTTATTGGCAGCATCAAAACGTTGTGTATTTTTATGGCCGAATTTAGCTGTAATTGCTATTATTCATTGCTTCTTTTCGTATGAGCTGCTGAACGGGGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTTTTAGAGATATCGTTGTACCTTCCCAGATGTAAATGAACTATTGTGGGGATTTCTTTTGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATAAAAGTGGTCATAGACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGAATTTTTTAAGAGACTGTTTAATGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATACGTTGCAACATGTTTTTTGCTGGGTCAACAAATGAAAACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTCTCTCCTTCCCCTGCTTTTCCCACTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTGGGCTGATGTTATTGGAATCTTGTTCAGCCCTGTGCCTTCAAGTGCATCCATGTATATTACTTAGGCTTGCCTGTGCATGTCTTATAACAGCATGACAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTCCTTTTAAGCTCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTGTTTTTTCTCTTGTTGCACGCCATGAGTACAGGTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACGTTACTGATCAAAGCTATTGCGCATGTATTGTTGTTGTTGTTATTGTTATTTCGACTGTCATAAATGTTAATTCTAAATATTTGGAGCAACTAAAAGATACTATTGTTTTTGTAGTTTATGTAGTCGTGCATGGGAAACTTTAGAATATCTCTTCAACCTTTCCATTCTTGTTTCGCTTCTCATGATTTAGTATCTGGGTTTGCCTTCTTTTTAGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGGAACGGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACAATAGCCACCGTGATGAGTCTTCGAAACTGGAGGATGATGCACCCACTTCTGCTCGGAAAAGGCCTGCATTTAGCGAGAAGAAGATTACAGTAGGCAATGAAAGTGGTGAGAAAGCAGCTATGGTATCAGAGATTCAGAAATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAATGA

mRNA sequence

ATGGAACTCTGGTATGACATGAATATGTGGCTTACTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGAAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTGTTTTCAGCATGACAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGGAACGGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACAATAGCCACCGTGATGAGTCTTCGAAACTGGAGGATGATGCACCCACTTCTGCTCGGAAAAGGCCTGCATTTAGCGAGAAGAAGATTACAGTAGGCAATGAAAGTGGTGAGAAAGCAGCTATGGTATCAGAGATTCAGAAATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAATGA

Coding sequence (CDS)

ATGGAACTCTGGTATGACATGAATATGTGGCTTACTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGAAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTGTTTTCAGCATGACAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGGAACGGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACAATAGCCACCGTGATGAGTCTTCGAAACTGGAGGATGATGCACCCACTTCTGCTCGGAAAAGGCCTGCATTTAGCGAGAAGAAGATTACAGTAGGCAATGAAAGTGGTGAGAAAGCAGCTATGGTATCAGAGATTCAGAAATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAATGA

Protein sequence

MELWYDMNMWLTVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE

Homology

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_023521658.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 195/215 (90.70%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 14  TSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG 73
           +SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG
Sbjct: 22  SSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG 81

Query: 74  VSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERG 133
           VSKG NRNSDRRD  TKHSMNPTEVPRSRS FQH KRGNDGQVG+S           ERG
Sbjct: 82  VSKGANRNSDRRDRRTKHSMNPTEVPRSRSYFQHVKRGNDGQVGQS----FGRSATRERG 141

Query: 134 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAF 193
           WWKDSREKEKDNDRASGKGTAYNSQQR+EMPQAVRD+SHRDESSKLEDDAPTSARKRPAF
Sbjct: 142 WWKDSREKEKDNDRASGKGTAYNSQQRNEMPQAVRDDSHRDESSKLEDDAPTSARKRPAF 201

Query: 194 SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE
Sbjct: 202 SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 232

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_023552844.1 (uncharacterized protein LOC111810369 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 160/183 (87.43%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MELWYDMNMWLTVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH 60
           MELW+DMNMWL VTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH
Sbjct: 1   MELWHDMNMWLIVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH 60

Query: 61  ECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSX 120
           ECSSALDSKPEYGVSKG NRNSDRRD  TKHSMNPTEVPRSRS FQH KRGNDGQVG+S 
Sbjct: 61  ECSSALDSKPEYGVSKGANRNSDRRDRRTKHSMNPTEVPRSRSYFQHVKRGNDGQVGQS- 120

Query: 121 XXXXXXXXXXERGWWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLE 180
                     ERGWWKDSREKEKDNDRASGKGTAYNSQQR+EMPQAVRD+SHRDESSKLE
Sbjct: 121 ---FGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRNEMPQAVRDDSHRDESSKLE 179

Query: 181 DDA 184
           D +
Sbjct: 181 DSS 179

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_022922750.1 (uncharacterized protein LOC111430649 [Cucurbita moschata])

HSP 1 Score: 282.3 bits (721), Expect = 1.4e-72
Identity = 152/176 (86.36%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSS LDSKPEYGV
Sbjct: 23  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSPLDSKPEYGV 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERGW 134
           SKG NRNSDRRD GTKHS+NPTEVPRSRS  QH KRGNDGQVGRS           ERGW
Sbjct: 83  SKGANRNSDRRDRGTKHSVNPTEVPRSRSYLQHVKRGNDGQVGRS----FGRSATRERGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKR 191
           WKDSREKEKDNDRASGK TAYNSQQRDEMPQAVRD+SHRDESSK E DAPTSA K+
Sbjct: 143 WKDSREKEKDNDRASGKATAYNSQQRDEMPQAVRDDSHRDESSKQEVDAPTSAWKK 194

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_023521659.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.5 bits (711), Expect = 2.1e-71
Identity = 154/218 (70.64%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 14  TSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG 73
           +SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKH L+HEGQD+ PHE S ALDS PE G
Sbjct: 22  SSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDVTPHESSLALDSHPEGG 81

Query: 74  VSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERG 133
           VSKG NRNSD R+GGTK S+NPTEVPRSRS FQHDKRG+ GQVGRS            RG
Sbjct: 82  VSKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSG----RG 141

Query: 134 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSH---RDESSKLEDDAPTSARKR 193
           WWKDS+E++K++DRASGK   YNSQ+RDE+PQ V++++H   RD SSKLE D+   ARKR
Sbjct: 142 WWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKR 201

Query: 194 PAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           PAF EKKIT  NE+ EKA M SE +K SDPHQP+DGRE
Sbjct: 202 PAFREKKITPDNENFEKAGMASESKKLSDPHQPQDGRE 235

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_004152279.1 (PREDICTED: uncharacterized protein LOC101213709 [Cucumis sativus] >KGN52754.1 hypothetical protein Csa_4G000750 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 1.5e-69
Identity = 152/214 (71.03%), Postives = 168/214 (78.50%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRS+RDRKTLEEKLSRNSSSHVEDNK+RDQKH L+  GQDMIPHE S AL+SKPE G 
Sbjct: 23  SPKRSKRDRKTLEEKLSRNSSSHVEDNKERDQKHELRLVGQDMIPHESSLALESKPEGGA 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERGW 134
             G NRNSD RDGGTKHS+NPTEVPRSRS FQHD+R N GQVGRS           ERGW
Sbjct: 83  GIGANRNSDGRDGGTKHSVNPTEVPRSRSYFQHDERSNAGQVGRS----FGRSATSERGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAFS 194
           WKDS++ +KD+DRASGK   Y SQQRDE PQA R++ H D SSKLE DA T ARKRPAF 
Sbjct: 143 WKDSKDPDKDSDRASGKSLTYKSQQRDEKPQAAREDRHHDGSSKLEVDALTPARKRPAFR 202

Query: 195 EKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           EKKITV NE GEK AMV E +KS+D HQ ++GRE
Sbjct: 203 EKKITVDNEDGEKVAMVPESKKSNDLHQIQEGRE 232

[Close]

BLAST of Carg19690 vs. TrEMBL
Match: tr|A0A0A0KV12|A0A0A0KV12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 9.7e-70
Identity = 152/214 (71.03%), Postives = 168/214 (78.50%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRS+RDRKTLEEKLSRNSSSHVEDNK+RDQKH L+  GQDMIPHE S AL+SKPE G 
Sbjct: 23  SPKRSKRDRKTLEEKLSRNSSSHVEDNKERDQKHELRLVGQDMIPHESSLALESKPEGGA 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERGW 134
             G NRNSD RDGGTKHS+NPTEVPRSRS FQHD+R N GQVGRS           ERGW
Sbjct: 83  GIGANRNSDGRDGGTKHSVNPTEVPRSRSYFQHDERSNAGQVGRS----FGRSATSERGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAFS 194
           WKDS++ +KD+DRASGK   Y SQQRDE PQA R++ H D SSKLE DA T ARKRPAF 
Sbjct: 143 WKDSKDPDKDSDRASGKSLTYKSQQRDEKPQAAREDRHHDGSSKLEVDALTPARKRPAFR 202

Query: 195 EKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           EKKITV NE GEK AMV E +KS+D HQ ++GRE
Sbjct: 203 EKKITVDNEDGEKVAMVPESKKSNDLHQIQEGRE 232

[Close]

BLAST of Carg19690 vs. TrEMBL
Match: tr|A0A1S3BY17|A0A1S3BY17_CUCME (uncharacterized protein LOC103494816 OS=Cucumis melo OX=3656 GN=LOC103494816 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 146/214 (68.22%), Postives = 161/214 (75.23%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRS+RDRKTLEEKLSRNSSS VEDNKDRDQKH L+  GQDMIPHE S AL+SKPE G 
Sbjct: 23  SPKRSKRDRKTLEEKLSRNSSSLVEDNKDRDQKHELRLVGQDMIPHESSLALESKPEGGA 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERGW 134
             G NR+SD RDGGTKHS+NP EVPRSRS FQHD+R N GQVGRS           ERGW
Sbjct: 83  GTGANRSSDGRDGGTKHSVNPNEVPRSRSYFQHDERSNAGQVGRS----FGRSTTSERGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAFS 194
           WKDS++ +KD DR   K   Y SQQRDE PQA R++ H + SSKLE D  T ARKRPAF 
Sbjct: 143 WKDSKDPDKDIDR---KTITYKSQQRDEKPQAAREDRHHEGSSKLEVDTLTPARKRPAFR 202

Query: 195 EKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           EKKITV NE GEK AMV E +KSSD HQ ++GRE
Sbjct: 203 EKKITVDNEDGEKVAMVPESKKSSDMHQIQEGRE 229

[Close]

BLAST of Carg19690 vs. TrEMBL
Match: tr|A0A2C9V4D7|A0A2C9V4D7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G081700 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.6e-24
Identity = 99/208 (47.60%), Postives = 125/208 (60.10%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG- 74
           SPKRSRRD K   E++  N++  VED+ DRDQKH  +   QD +P E SSA +SK E G 
Sbjct: 25  SPKRSRRDGKPETERVPSNTNLDVEDHADRDQKH--RRRLQDALPLEASSAPESKAESGS 84

Query: 75  VSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERG 134
           VSK  ++  +    G+KHS +PTEVPRSRS +QHD+RGN  QVGR+           ER 
Sbjct: 85  VSKETDKKPNGHHEGSKHS-DPTEVPRSRSYYQHDERGNAAQVGRN----FGRRATAER- 144

Query: 135 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAV-RDNSHR-DESSKLEDDAPTSARKRP 194
            W+DS  K+  N+RA  K + Y+S+QRDE  QA   DN  R D   K+E +     RKRP
Sbjct: 145 QWRDS--KDVRNERAMDKSSTYDSRQRDEKAQAKGGDNVWRHDGFFKMEAEPAPPVRKRP 204

Query: 195 AFSEKKITVGNESGEKAAMVSEIQKSSD 220
           AF EKKI V +E+ EKA      Q  SD
Sbjct: 205 AFREKKIPVDSENAEKATSEPARQGHSD 222

[Close]

BLAST of Carg19690 vs. TrEMBL
Match: tr|A0A1U8B0H0|A0A1U8B0H0_NELNU (uncharacterized protein LOC104608300 OS=Nelumbo nucifera OX=4432 GN=LOC104608300 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 90/218 (41.28%), Postives = 125/218 (57.34%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKR RRD K   E+ S + +  + D+KDRDQKH  +   QD +P E   A +SK    +
Sbjct: 23  SPKRPRRDGKPATERTSSDRNLDIIDHKDRDQKH--RRRLQDALPLEAPLAPESKVGADI 82

Query: 75  S-KGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERG 134
           + K  +R ++  + GTK S +PTEVPRSRS FQHD+RG+ GQ GRS           ER 
Sbjct: 83  ADKDFDRKTNEFNDGTKRSSDPTEVPRSRSYFQHDERGSAGQGGRS----FSRRGTTERR 142

Query: 135 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNS---HRDESSKLEDDAPTSARKR 194
           WW+D   KE+  DR S KG + + +Q+DE  Q+  ++    H D   +LE +AP  A+KR
Sbjct: 143 WWRD--PKEQSGDRESDKGGSNDMRQKDEKTQSKGEDKSVWHHDGFFQLEAEAPPQAKKR 202

Query: 195 PAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           PAF EKK+    +SG +    +E  + S P +P  G E
Sbjct: 203 PAFREKKMP--PDSGAEGIKPAESVRPSRPDRPVSGSE 230

[Close]

BLAST of Carg19690 vs. TrEMBL
Match: tr|B9SNE9|B9SNE9_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0175730 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 95/218 (43.58%), Postives = 122/218 (55.96%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRSRRD K   E++   ++ +VED+ DRDQ+H  +    D +P E  SA DSK E GV
Sbjct: 25  SPKRSRRDGKPETERVPSYTNLNVEDSTDRDQRH--RRRLHDALPLEAPSAPDSKVEAGV 84

Query: 75  -SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSXXXXXXXXXXXERG 134
            SK   +  +    GTK S +P +VPRSRS FQHD+RGN  QVGRS           ER 
Sbjct: 85  LSKDSEKKPNGDHEGTKRSSDPIDVPRSRSYFQHDERGNAAQVGRS----IGRRATTERR 144

Query: 135 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVR-DNS--HRDESSKLEDDAPTSARKR 194
            W+DS  K++ N+RA  K + Y+SQQRD    A   D S  H D   K+E +     RKR
Sbjct: 145 -WRDS--KDERNERAINKSSNYDSQQRDGRSHAKGVDKSVWHHDAFFKMEAEPAAPVRKR 204

Query: 195 PAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           PAF EKK+ V +E+ EK A+       SD     + RE
Sbjct: 205 PAFREKKVPVDSENAEKTAIEPVKPSHSDRPSEIERRE 233

The following BLAST results are available for this feature:

BLAST of Carg19690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521658.1	1.3e-97	90.70	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]	[more]
XP_023552844.1	1.2e-79	87.43	uncharacterized protein LOC111810369 [Cucurbita pepo subsp. pepo]	[more]
XP_022922750.1	1.4e-72	86.36	uncharacterized protein LOC111430649 [Cucurbita moschata]	[more]
XP_023521659.1	2.1e-71	70.64	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]	[more]
XP_004152279.1	1.5e-69	71.03	PREDICTED: uncharacterized protein LOC101213709 [Cucumis sativus] >KGN52754.1 hy...	[more]

BLAST of Carg19690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KV12\|A0A0A0KV12_CUCSA	9.7e-70	71.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1	[more]
tr\|A0A1S3BY17\|A0A1S3BY17_CUCME	1.4e-63	68.22	uncharacterized protein LOC103494816 OS=Cucumis melo OX=3656 GN=LOC103494816 PE=...	[more]
tr\|A0A2C9V4D7\|A0A2C9V4D7_MANES	3.6e-24	47.60	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G081700 PE=4 SV=...	[more]
tr\|A0A1U8B0H0\|A0A1U8B0H0_NELNU	1.5e-22	41.28	uncharacterized protein LOC104608300 OS=Nelumbo nucifera OX=4432 GN=LOC104608300...	[more]
tr\|B9SNE9\|B9SNE9_RICCO	5.8e-22	43.58	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0175730 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19690-RA	Carg19690-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..149
None	No IPR available	PANTHER	PTHR36364	FAMILY NOT NAMED	coord: 14..225

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19690	CmaCh16G003160	Cucurbita maxima (Rimu)	carcmaB0406
Carg19690	CmoCh16G003350	Cucurbita moschata (Rifu)	carcmoB0402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19690	Melon (DHL92) v3.5.1	carmeB0295
Carg19690	Melon (DHL92) v3.5.1	carmeB0297
Carg19690	Melon (DHL92) v3.6.1	carmedB0306
Carg19690	Melon (DHL92) v3.6.1	carmedB0308
Carg19690	Watermelon (Charleston Gray)	carwcgB0287
Carg19690	Watermelon (Charleston Gray)	carwcgB0288
Carg19690	Watermelon (97103) v1	carwmB0287
Carg19690	Watermelon (97103) v2	carwmbB0303
Carg19690	Watermelon (97103) v2	carwmbB0302
Carg19690	Watermelon (97103) v2	carwmbB0305
Carg19690	Wax gourd	carwgoB0381
Carg19690	Wax gourd	carwgoB0383
Carg19690	Silver-seed gourd	carcarB324
Carg19690	Cucumber (Gy14) v2	carcgybB0309
Carg19690	Cucumber (Gy14) v1	carcgyB0346
Carg19690	Cucumber (Gy14) v1	carcgyB0344
Carg19690	Cucumber (Gy14) v1	carcgyB0348
Carg19690	Cucurbita maxima (Rimu)	carcmaB0405
Carg19690	Cucurbita maxima (Rimu)	carcmaB0407
Carg19690	Cucurbita maxima (Rimu)	carcmaB0408
Carg19690	Cucurbita moschata (Rifu)	carcmoB0401
Carg19690	Cucurbita moschata (Rifu)	carcmoB0403
Carg19690	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19690	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19690	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19690	Wild cucumber (PI 183967)	carcpiB0328
Carg19690	Wild cucumber (PI 183967)	carcpiB0329
Carg19690	Cucumber (Chinese Long) v2	carcuB0322
Carg19690	Cucumber (Chinese Long) v2	carcuB0323
Carg19690	Cucumber (Chinese Long) v3	carcucB0328
Carg19690	Cucumber (Chinese Long) v3	carcucB0329
Carg19690	Bottle gourd (USVL1VR-Ls)	carlsiB269