CmaCh16G002580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 1218431 .. 1218739 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGATTTAGGGTTTTTTCAGGACGATGACGACGAAGGCTGTGGCGGCGGGTCCGTGAATGGACCGGCGGAGTTCCGGTTAGGTCAGATTGTGAGGGCGGTTCGGTTTTTGGGAGAGTCGGCTTATAGCCGGCTCGGTAGGGTAAAGGAGGGGGCAAACCAGACCAGAATCTCGGCGGAGAAATTGGCGGCGGAGGCGCTGTGGTTAGCGGAAAAAATGGCGAGTTGCGGTTGTCGGAGTGAGGCTTGTAGGCGGTGGGCTTCGGCGGGTCAATTGGGAAGACTCTCCCTCGCGGTGGAGCTGTGA

mRNA sequence

ATGCTAGATTTAGGGTTTTTTCAGGACGATGACGACGAAGGCTGTGGCGGCGGGTCCGTGAATGGACCGGCGGAGTTCCGGTTAGGTCAGATTGTGAGGGCGGTTCGGTTTTTGGGAGAGTCGGCTTATAGCCGGCTCGGTAGGGTAAAGGAGGGGGCAAACCAGACCAGAATCTCGGCGGAGAAATTGGCGGCGGAGGCGCTGTGGTTAGCGGAAAAAATGGCGAGTTGCGGTTGTCGGAGTGAGGCTTGTAGGCGGTGGGCTTCGGCGGGTCAATTGGGAAGACTCTCCCTCGCGGTGGAGCTGTGA

Coding sequence (CDS)

ATGCTAGATTTAGGGTTTTTTCAGGACGATGACGACGAAGGCTGTGGCGGCGGGTCCGTGAATGGACCGGCGGAGTTCCGGTTAGGTCAGATTGTGAGGGCGGTTCGGTTTTTGGGAGAGTCGGCTTATAGCCGGCTCGGTAGGGTAAAGGAGGGGGCAAACCAGACCAGAATCTCGGCGGAGAAATTGGCGGCGGAGGCGCTGTGGTTAGCGGAAAAAATGGCGAGTTGCGGTTGTCGGAGTGAGGCTTGTAGGCGGTGGGCTTCGGCGGGTCAATTGGGAAGACTCTCCCTCGCGGTGGAGCTGTGA

Protein sequence

MLDLGFFQDDDDEGCGGGSVNGPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAEKLAAEALWLAEKMASCGCRSEACRRWASAGQLGRLSLAVEL

Homology

[Close]

BLAST of CmaCh16G002580 vs. TrEMBL
Match: A0A0A0KXY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 1


Query: 1   MLDLGFFQDDDD--EGCGGGSVNGPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRI 60
           M++ GF Q+D+D   G GGGSV GP EF LG++VRAVRFLGESA SR GRV+E  NQ+  
Sbjct: 160 MIERGFCQEDNDGENGGGGGSVGGPVEFGLGRVVRAVRFLGESACSRFGRVREVGNQSGS 219

Query: 61  SAEKLAAEALWLAEKMASCGCRSEACRRWASAGQLGRLSLAVE 102
           S EKLAAE LWLA+KM SCG  +E C RWASA QLGRLSL+ E
Sbjct: 220 SVEKLAAEVLWLAQKMVSCGFGNEVCGRWASATQLGRLSLSAE 262

[Close]

BLAST of CmaCh16G002580 vs. TrEMBL
Match: B9IJF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08030g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1


Query: 2   LDLGFFQDDDDEGCGGGSVNGPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAE 61
           L+    +   D    GGS  GP + RL QI++A R +G+ +++R GR +EG ++   S E
Sbjct: 164 LEAAMMEIAHDGSENGGSRTGPVKRRLNQILKAARAVGDVSWARSGRGREGGDR---SEE 223

Query: 62  KLAAEALWLAEKMASCGCRSEACRRWASAGQLGRLSLAVE 102
           KLAAE LWL +K+++CGC  EA RRWASA  L RL+L+ E
Sbjct: 224 KLAAELLWLGQKLSACGCGEEAVRRWASASNLARLALSAE 260

[Close]

BLAST of CmaCh16G002580 vs. TrEMBL
Match: A0A061E161_THECC (Uncharacterized protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 22  GPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAEKLAAEALWLAEKMASCGCRS 81
           GP  +RL +++RA+R +G+  +SR+G  +E  N++  SA+KLAAE LWLA+K+A+CG   
Sbjct: 178 GPVRYRLNRVLRAIRSVGDGVWSRVGMGREDVNRSGNSAQKLAAELLWLAQKLAACGFEE 237

Query: 82  EACRRWASAGQLGRLSLAVE 102
           EA  RWAS  ++  LSL+ E
Sbjct: 238 EAVERWASTSKMAWLSLSAE 257

[Close]

BLAST of CmaCh16G002580 vs. TrEMBL
Match: A0A061E933_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 22  GPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAEKLAAEALWLAEKMASCGCRS 81
           GP  +RL +++RA+R +G+  +SR+G  +E  N++  SA+KLAAE LWLA+K+A+CG   
Sbjct: 178 GPVRYRLNRVLRAIRSVGDGVWSRVGMGREDVNRSGNSAQKLAAELLWLAQKLAACGFEE 237

Query: 82  EACRRWASAGQLGRLSLAVE 102
           EA  RWAS  ++  LSL+ E
Sbjct: 238 EAVERWASTSKMAWLSLSAE 257

[Close]

BLAST of CmaCh16G002580 vs. TrEMBL
Match: M5VJW4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006716mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.5e-12
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 17  GGSVNGPA---EFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAEKLAAEALWLAEK 76
           GG + GPA   E+RL +++RAVR +G+ A+    R    A+ +R SAEKLAAE LWLAEK
Sbjct: 185 GGDLVGPARPAEYRLSRVLRAVRSIGDVAWLGAAR----ASGSRSSAEKLAAEVLWLAEK 244

Query: 77  MASCGCRSEACRRWASAGQLGRLSLAVE 102
           +A+CG   EA  RWASA  L  LS++VE
Sbjct: 245 LAACGYGDEAVVRWASASNLAWLSVSVE 268

[Close]

BLAST of CmaCh16G002580 vs. TAIR10
Match: AT5G64230.1 (AT5G64230.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-09
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 20  VNGPAEFRLGQIVRAV-RFLGESAYSRLGRVKEGANQTRISAEKLAAEALWLAEKMASCG 79
           ++ P    L ++VRAV R +G+      G  +E A+QT  ++EKLAAE LWLAEKMA  G
Sbjct: 173 IDEPVRRGLNRVVRAVVRAVGDGFIGWGG--EETADQTAETSEKLAAELLWLAEKMAVYG 232

Query: 80  CRSEACRRWASAGQLGRLSLAVE 102
              EA  +WASA  L  L+L+ E
Sbjct: 233 FVDEAVEKWASASNLAWLALSCE 253

[Close]

BLAST of CmaCh16G002580 vs. NCBI nr
Match: gi|449439003|ref|XP_004137277.1| (PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 3.5e-27
Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 1


Query: 1   MLDLGFFQDDDD--EGCGGGSVNGPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRI 60
           M++ GF Q+D+D   G GGGSV GP EF LG++VRAVRFLGESA SR GRV+E  NQ+  
Sbjct: 160 MIERGFCQEDNDGENGGGGGSVGGPVEFGLGRVVRAVRFLGESACSRFGRVREVGNQSGS 219

Query: 61  SAEKLAAEALWLAEKMASCGCRSEACRRWASAGQLGRLSLAVE 102
           S EKLAAE LWLA+KM SCG  +E C RWASA QLGRLSL+ E
Sbjct: 220 SVEKLAAEVLWLAQKMVSCGFGNEVCGRWASATQLGRLSLSAE 262

[Close]

BLAST of CmaCh16G002580 vs. NCBI nr
Match: gi|659125788|ref|XP_008462861.1| (PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 1


Query: 1   MLDLGFFQDDDD--EGCGGGSVNGPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRI 60
           M++ GF Q+D+D  +G GGGS+ GP EF LG++VRAVR LGESA SR GR KE  NQ+  
Sbjct: 164 MIERGFCQEDNDGGDGGGGGSLGGPVEFGLGRVVRAVRLLGESACSRFGREKEVGNQSGS 223

Query: 61  SAEKLAAEALWLAEKMASCGCRSEACRRWASAGQLGRLSLAVE 102
           S EKLAAE LWLA+KMASCG  +E C RWASA QLGRLSL+ E
Sbjct: 224 SVEKLAAEMLWLAQKMASCGYWNEVCGRWASAAQLGRLSLSAE 266

[Close]

BLAST of CmaCh16G002580 vs. NCBI nr
Match: gi|743897147|ref|XP_011041858.1| (PREDICTED: uncharacterized protein LOC105137724 [Populus euphratica])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 2   LDLGFFQDDDDEGCGGGSVNGPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAE 61
           L+    +   D    GGS  GP + RL QI++AVR +G+ +++R GR +EGA++   S E
Sbjct: 164 LEAAMMEIAHDGSENGGSRTGPVKGRLNQILKAVRVVGDGSWARSGRGREGADR---SEE 223

Query: 62  KLAAEALWLAEKMASCGCRSEACRRWASAGQLGRLSLAVE 102
           KLAAE LWL +K+++CGC  EA RRWASA  L RL+L+ E
Sbjct: 224 KLAAELLWLGQKLSACGCGEEAVRRWASASNLARLALSAE 260

[Close]

BLAST of CmaCh16G002580 vs. NCBI nr
Match: gi|224141233|ref|XP_002323979.1| (hypothetical protein POPTR_0017s08030g [Populus trichocarpa])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1


Query: 2   LDLGFFQDDDDEGCGGGSVNGPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAE 61
           L+    +   D    GGS  GP + RL QI++A R +G+ +++R GR +EG ++   S E
Sbjct: 164 LEAAMMEIAHDGSENGGSRTGPVKRRLNQILKAARAVGDVSWARSGRGREGGDR---SEE 223

Query: 62  KLAAEALWLAEKMASCGCRSEACRRWASAGQLGRLSLAVE 102
           KLAAE LWL +K+++CGC  EA RRWASA  L RL+L+ E
Sbjct: 224 KLAAELLWLGQKLSACGCGEEAVRRWASASNLARLALSAE 260

[Close]

BLAST of CmaCh16G002580 vs. NCBI nr
Match: gi|590688377|ref|XP_007042930.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-13
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 22  GPAEFRLGQIVRAVRFLGESAYSRLGRVKEGANQTRISAEKLAAEALWLAEKMASCGCRS 81
           GP  +RL +++RA+R +G+  +SR+G  +E  N++  SA+KLAAE LWLA+K+A+CG   
Sbjct: 178 GPVRYRLNRVLRAIRSVGDGVWSRVGMGREDVNRSGNSAQKLAAELLWLAQKLAACGFEE 237

Query: 82  EACRRWASAGQLGRLSLAVE 102
           EA  RWAS  ++  LSL+ E
Sbjct: 238 EAVERWASTSKMAWLSLSAE 257

The following BLAST results are available for this feature:

BLAST of CmaCh16G002580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY7_CUCSA	2.5e-27	66.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1	[more]
B9IJF8_POPTR	1.8e-14	46.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08030g PE=4 SV=1	[more]
A0A061E161_THECC	3.5e-13	47.50	Uncharacterized protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_007464 PE...	[more]
A0A061E933_THECC	3.5e-13	47.50	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1	[more]
M5VJW4_PRUPE	8.5e-12	52.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006716mg PE=4 SV=1	[more]

BLAST of CmaCh16G002580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64230.1	6.0e-09	45.78	unknown protein	[more]

BLAST of CmaCh16G002580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439003\|ref\|XP_004137277.1\|	3.5e-27	66.02	PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus]	[more]
gi\|659125788\|ref\|XP_008462861.1\|	1.8e-26	65.05	PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo]	[more]
gi\|743897147\|ref\|XP_011041858.1\|	1.4e-15	48.00	PREDICTED: uncharacterized protein LOC105137724 [Populus euphratica]	[more]
gi\|224141233\|ref\|XP_002323979.1\|	2.6e-14	46.00	hypothetical protein POPTR_0017s08030g [Populus trichocarpa]	[more]
gi\|590688377\|ref\|XP_007042930.1\|	5.0e-13	47.50	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002580.1	CmaCh16G002580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31060	FAMILY NOT NAMED	coord: 27..101 score: 2.3
None	No IPR available	PANTHER	PTHR31060:SF4	SUBFAMILY NOT NAMED	coord: 27..101 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002580	Cucsa.398170	Cucumber (Gy14) v1	cgycmaB1101
CmaCh16G002580	Cla002479	Watermelon (97103) v1	cmawmB293
CmaCh16G002580	Csa4G109030	Cucumber (Chinese Long) v2	cmacuB334
CmaCh16G002580	MELO3C024809	Melon (DHL92) v3.5.1	cmameB306
CmaCh16G002580	ClCG10G009290	Watermelon (Charleston Gray)	cmawcgB280
CmaCh16G002580	CSPI04G09310	Wild cucumber (PI 183967)	cmacpiB339
CmaCh16G002580	CmoCh04G004220	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002580	CmoCh16G002690	Cucurbita moschata (Rifu)	cmacmoB325
CmaCh16G002580	Lsi03G009510	Bottle gourd (USVL1VR-Ls)	cmalsiB307
CmaCh16G002580	Cp4.1LG14g04980	Cucurbita pepo (Zucchini)	cmacpeB346
CmaCh16G002580	Cp4.1LG01g03100	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002580	MELO3C024809.2	Melon (DHL92) v3.6.1	cmamedB357
CmaCh16G002580	CsaV3_4G009470	Cucumber (Chinese Long) v3	cmacucB0389
CmaCh16G002580	Cla97C10G192450	Watermelon (97103) v2	cmawmbB332
CmaCh16G002580	CsGy4G009060	Cucumber (Gy14) v2	cgybcmaB495
CmaCh16G002580	Carg16790	Silver-seed gourd	carcmaB1207
CmaCh16G002580	Carg08071	Silver-seed gourd	carcmaB0526

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002580	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002580	Bottle gourd (USVL1VR-Ls)	cmalsiB323
CmaCh16G002580	Cucumber (Gy14) v2	cgybcmaB493
CmaCh16G002580	Melon (DHL92) v3.6.1	cmamedB355
CmaCh16G002580	Silver-seed gourd	carcmaB0406
CmaCh16G002580	Cucumber (Chinese Long) v3	cmacucB0387
CmaCh16G002580	Watermelon (97103) v2	cmawmbB352
CmaCh16G002580	Wax gourd	cmawgoB0410
CmaCh16G002580	Wax gourd	cmawgoB0440
CmaCh16G002580	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G002580	Cucumber (Gy14) v1	cgycmaB0196
CmaCh16G002580	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002580	Wild cucumber (PI 183967)	cmacpiB337
CmaCh16G002580	Cucumber (Chinese Long) v2	cmacuB332
CmaCh16G002580	Melon (DHL92) v3.5.1	cmameB304
CmaCh16G002580	Watermelon (Charleston Gray)	cmawcgB302
CmaCh16G002580	Watermelon (97103) v1	cmawmB313