CmaCh15G009410 (gene) Cucurbita maxima (Rimu)

NameCmaCh15G009410
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHB transcription factor
LocationCma_Chr15 : 4997473 .. 5000029 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCGGGTACCGGTGGTAGGAGAAGCGGCGGAGGAAGAACGAGCGGTGGCGGAGAGGACGGAGGAGGAAGAGGAGAGCTGCAGCATTAACAATGGAGGTGGTCAGCCAAGGAAGAAGCTTAGTCTATCAAAGCATCAGTCTCGTCTCCTTGAAGATATCTTCAGGCATAACCATTCATTAAACCCTGTGAGCAAAATCATCTCAATATTAATTAATGATTTTCTAATTCCTTAATTAATTAATTTTTAATTTTTAATTTTTAATTTTTAATTTTTTTTAGAAGCAAAAGGAAGCCTTGGCTATGGCACTTCAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGTAATTTGTATTCATAATTATATTTCATTTTATTTTTTAAACATTTAATTAGAACAAAATAAATAAATAAATAAATAAAATAAATTATTTTTTTATTTTGTTTTAAGATACTTGTTCATGAAATTGTAATATATTGTATCCATATAGTTTTTTTTTCCACTATTTGTGAAAAAGAAAAAATATATATATATATTTGTAAAATATTCTATAAGAATATATGTTAAAATTTTGGTTCTTAAAAGAAATAAATAAGGTTAGTTATTATTAAAATTTAACAATAATAATAAAGAAAATTATTATGAAAACAATCAATAAAAGATACAATTATTTGATTTTTTTAAAAATTAAACTTAATTATAAATACTAATTTTATAATTTAGATATAATAATTATTAGTTAATCAAAATTTTGAAAAGCATTAAAAACAAATAAAAAAAGTTGTTAAAAAATAAAATTAATAAAATAAATAATTTTATAGAGTAAAAATAATAAAAACACAAAAGTATTTTTTTTTTTTATAAATAAAATAAAATAAGAAATATAAGTTGAATTAATTTGAATAAGTTTTAATTAAGAAAATAAAAAAAAAATCAATAACTAATATTCATTTAACTAATTTAATGGACAACTCATATCCAAATTTTTATTTAATAAACCAAAGTTCGAAGCGTTGGACCAATGAGTTCGATTATTGAAAGTTGAGCTAGCCTTGTCTAACTTAAATTACCTTAATTTGTTATGCTTTTTGTCGTGACCCGACCCACAACGAATATAATGACTTTCATGAATTTCTTTATTTTAAAAAAAAAAACTATAAATAAAATTGTTATCCAACCAAACCTAAACCTTTTATAAGGTACCATCTTAAATTTATATATTTTTGTTGACTTTCAATTAATTATCATGGCCTAAATTGATATATTACCAAATGAGTAAAAAGTATACATTTATTTATTTTTTTGTTTCTTACCTTCTAAAATTAAAAAATAAAAAATATAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGTAAATGTGCTTGATAACGGTTTCCTGTTTATAGTTTTATTGTTTTTTTGTAACATTTTTATTAATAACCTTGAAATTCTAATTTTGTTTATTTTTTAAAGATACTCTTTTCTCATTTCTTCAACACTATATCCATTTTTTTCAGAAATTTCTAAAATTTATAATAAATATAAGAAATTTCAATATCCAAACCATAAATTTGTTCGAAAAATAATTATTTTGAGAGATTTAAAAAAAAAATACTAATAAAATCTATCATTCAAATTTGATGTGCTGTCATTTTTTTTTTTTTTTGTTCTCTGTTCAATTTGTCTTAAATAATATTGAGTTGCATAATTATTTCAATTAAACTAACAAATTTTGTAAATTGTTAACGATCAACTGCTAATTGATATATATTTTTGTGTGTCGATTTGGTTATGTGACATTTAGTTGGTAAGGTTTGACATTGTAGCATATTTATATTTCTCTAATTCAATAATATATTTTCTTTTAGTGGAGGATTAAGTTGAATTTTTGAAAAACTGATAATTCGGTATGATTTTTATCGGGTCAACCTGATTGACTTGAAAATAGGGTTATAATCTAATCCTACGTCCTAATAATTTATAAAATTAGTAGAGTGGTGTTTATATTTTTGTCAAAATTTGATCTAACAAATAACAGTAATATTATAGGAGCAAGCTGAAGCAAACTGAGATGGAATACCAGTATTTAAGGAGGTGGTTTGGCTCATTGACGGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTCAGAGCTATTAAGGTTGCTCTCCCAGCCGTCGACTCAAGCCACGGCCGACAGCCACCCCTCCCGGTGTCCACTATAACCATGTGTCCCCAGTGCAAGCGCGTAACCGCTGCCACCATAACATCTAGTAGGGCTGCAGCCACCCAGACCGCCATTGCCACCACTGCAACGCCACCGAAGGCGGTTCGGTCCGCCCTCAAGTTGCAGCAGCCGTCGCAAGGTTGA

mRNA sequence

ATGAACCGGGTACCGGTGGTAGGAGAAGCGGCGGAGGAAGAACGAGCGGTGGCGGAGAGGACGGAGGAGGAAGAGGAGAGCTGCAGCATTAACAATGGAGGTGGTCAGCCAAGGAAGAAGCTTAGTCTATCAAAGCATCAGTCTCGTCTCCTTGAAGATATCTTCAGGCATAACCATTCATTAAACCCTAAGCAAAAGGAAGCCTTGGCTATGGCACTTCAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATACCAGTATTTAAGGAGGTGGTTTGGCTCATTGACGGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTCAGAGCTATTAAGGTTGCTCTCCCAGCCGTCGACTCAAGCCACGGCCGACAGCCACCCCTCCCGGTGTCCACTATAACCATGTGTCCCCAGTGCAAGCGCGTAACCGCTGCCACCATAACATCTAGTAGGGCTGCAGCCACCCAGACCGCCATTGCCACCACTGCAACGCCACCGAAGGCGGTTCGGTCCGCCCTCAAGTTGCAGCAGCCGTCGCAAGGTTGA

Coding sequence (CDS)

ATGAACCGGGTACCGGTGGTAGGAGAAGCGGCGGAGGAAGAACGAGCGGTGGCGGAGAGGACGGAGGAGGAAGAGGAGAGCTGCAGCATTAACAATGGAGGTGGTCAGCCAAGGAAGAAGCTTAGTCTATCAAAGCATCAGTCTCGTCTCCTTGAAGATATCTTCAGGCATAACCATTCATTAAACCCTAAGCAAAAGGAAGCCTTGGCTATGGCACTTCAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATACCAGTATTTAAGGAGGTGGTTTGGCTCATTGACGGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTCAGAGCTATTAAGGTTGCTCTCCCAGCCGTCGACTCAAGCCACGGCCGACAGCCACCCCTCCCGGTGTCCACTATAACCATGTGTCCCCAGTGCAAGCGCGTAACCGCTGCCACCATAACATCTAGTAGGGCTGCAGCCACCCAGACCGCCATTGCCACCACTGCAACGCCACCGAAGGCGGTTCGGTCCGCCCTCAAGTTGCAGCAGCCGTCGCAAGGTTGA

Protein sequence

MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSALKLQQPSQG
BLAST of CmaCh15G009410 vs. Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-42
Identity = 103/170 (60.59%), Postives = 125/170 (73.53%), Query Frame = 1

Query: 12  EEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAM 71
           EEE       EE+EE   +  GG    KKL LSK QSRLLE+ FR NH+L PKQKEALA+
Sbjct: 53  EEEEFPMGSVEEDEEERGV--GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAI 112

Query: 72  ALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVAL 131
            L+L+PRQVEVWFQNRRAR+KLKQTEME +YL+R FGSLTE+NRRL+RE+EELRA++VA 
Sbjct: 113 KLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAP 172

Query: 132 PAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATP 182
           P V S H RQ PLP S +TMCP+C+R+TAAT   +      +A A   +P
Sbjct: 173 PTVLSPHTRQ-PLPASALTMCPRCERITAATGPPAVRPPPSSAAAAAPSP 219

BLAST of CmaCh15G009410 vs. Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-42
Identity = 103/170 (60.59%), Postives = 125/170 (73.53%), Query Frame = 1

Query: 12  EEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAM 71
           EEE       EE+EE   +  GG    KKL LSK QSRLLE+ FR NH+L PKQKEALA+
Sbjct: 53  EEEEFPMGSVEEDEEERGV--GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAI 112

Query: 72  ALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVAL 131
            L+L+PRQVEVWFQNRRAR+KLKQTEME +YL+R FGSLTE+NRRL+RE+EELRA++VA 
Sbjct: 113 KLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAP 172

Query: 132 PAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATP 182
           P V S H RQ PLP S +TMCP+C+R+TAAT   +      +A A   +P
Sbjct: 173 PTVLSPHTRQ-PLPASALTMCPRCERITAATGPPAVRPPPSSAAAAAPSP 219

BLAST of CmaCh15G009410 vs. Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.8e-39
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 1

Query: 24  EEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVW 83
           ++E  S ++G   PRKKL L++ QSRLLED FR NH+LNPKQKE LA  L L+PRQ+EVW
Sbjct: 124 DDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVW 183

Query: 84  FQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQPP 143
           FQNRRARSKLKQTEME +YL+RWFGSLTE+N RL RE+EELRA+KV    V+S+      
Sbjct: 184 FQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNSA------ 243

Query: 144 LPVSTITMCPQCKRVTAATITSSRAAATQTAIAT 178
              S++TMCP+C+RVT A  + SRA     A  T
Sbjct: 244 ---SSLTMCPRCERVTPAA-SPSRAVVPVPAKKT 267

BLAST of CmaCh15G009410 vs. Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.4e-32
Identity = 86/168 (51.19%), Postives = 105/168 (62.50%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHS 60
           +N+ P   E  E          E++     +N GG+ RKKL L+K QS LLE+ F  NH+
Sbjct: 36  INQTPKTEEDREWMIGATPHVNEDD-----SNSGGRRRKKLRLTKEQSHLLEESFIQNHT 95

Query: 61  LNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRE 120
           L PKQK+ LA  L+L  RQVEVWFQNRRARSKLK TEME +YL+RWFGSL EQNRRL+ E
Sbjct: 96  LTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIE 155

Query: 121 LEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRA 169
           +EELRA+K              P   S +TMCP+C+RVT A    S A
Sbjct: 156 VEELRALK--------------PSSTSALTMCPRCERVTDAVDNDSNA 184

BLAST of CmaCh15G009410 vs. Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 7.1e-32
Identity = 88/175 (50.29%), Postives = 117/175 (66.86%), Query Frame = 1

Query: 16  AVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQL 75
           A A    ++E+S      GG  RKKL LSK Q+ +LED F+ +++LNPKQK ALA  L L
Sbjct: 140 AAAAAASDDEDS------GGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNL 199

Query: 76  KPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVD 135
           KPRQVEVWFQNRRAR+KLKQTE++ + L+R   +LT++NRRL REL+ELRA+K+A  A  
Sbjct: 200 KPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAA 259

Query: 136 SSH--GRQPPLPVSTITMCPQCKRVTAATIT--SSRAAATQTAIATTATPPKAVR 187
             H  G + P P +T+TMCP C+RV +A  T  ++  AA    + T   PP A +
Sbjct: 260 PHHLYGARVP-PPTTLTMCPSCERVASAATTTRNNSGAAPARPVPTRPWPPAAAQ 307

BLAST of CmaCh15G009410 vs. TrEMBL
Match: A0A0A0KPM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576600 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.1e-55
Identity = 135/198 (68.18%), Postives = 152/198 (76.77%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGG-QPRKKLSLSKHQSRLLEDIFRHNH 60
           MNRVP  GEA EE+ A     EE EE  SINN GG QPRKKL LSK QSRLLE+ FR NH
Sbjct: 17  MNRVPAEGEA-EEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEESFRLNH 76

Query: 61  SLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRR 120
           +LNPKQKE LAM L+LKPRQVEVWFQNRRARSKLKQTE+E +Y++R FGSLTEQNRRL+ 
Sbjct: 77  TLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQW 136

Query: 121 ELEELRAIKVALPAVDSSHGRQPPLPV-STITMCPQCKRVTAATITSSRAAATQTAIATT 180
           ELEELRAIKVA PAV S H R PPL + STIT+CP+C+R+    I+S    A QTA   T
Sbjct: 137 ELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERI----ISSKNTVADQTATTAT 196

Query: 181 ATPPKAVRSALKLQQPSQ 197
           A P K V SAL+L+QPSQ
Sbjct: 197 AMPSKVVLSALQLRQPSQ 209

BLAST of CmaCh15G009410 vs. TrEMBL
Match: V4TLZ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016477mg PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.1e-47
Identity = 110/169 (65.09%), Postives = 127/169 (75.15%), Query Frame = 1

Query: 22  EEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVE 81
           ++EEESC IN  GG PRKKL LSK QSRLLE+ FRHNH+LNPKQKE LA  L+LKPRQVE
Sbjct: 72  DDEEESC-INVDGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVE 131

Query: 82  VWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQ 141
           VWFQNRRARSKLKQTEME +YL+RWFGSLTEQNRRL+RE+EELRA+KV  P V S H  +
Sbjct: 132 VWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCE 191

Query: 142 PPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSALK 191
            PLP ST++MCP+C+RVT   I       T  +    A  PK    AL+
Sbjct: 192 -PLPASTLSMCPRCERVTTTAIDKGPTKVTTASSTPAALSPKVGTPALQ 238

BLAST of CmaCh15G009410 vs. TrEMBL
Match: A0A067FF13_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026325mg PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.1e-47
Identity = 110/169 (65.09%), Postives = 127/169 (75.15%), Query Frame = 1

Query: 22  EEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVE 81
           ++EEESC IN  GG PRKKL LSK QSRLLE+ FRHNH+LNPKQKE LA  L+LKPRQVE
Sbjct: 72  DDEEESC-INVDGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVE 131

Query: 82  VWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQ 141
           VWFQNRRARSKLKQTEME +YL+RWFGSLTEQNRRL+RE+EELRA+KV  P V S H  +
Sbjct: 132 VWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCE 191

Query: 142 PPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSALK 191
            PLP ST++MCP+C+RVT   I       T  +    A  PK    AL+
Sbjct: 192 -PLPASTLSMCPRCERVTTTAIDKGPTKVTTASSTPAALSPKVGTPALQ 238

BLAST of CmaCh15G009410 vs. TrEMBL
Match: B9HW68_POPTR (Homeobox-leucine zipper protein 17 OS=Populus trichocarpa GN=POPTR_0010s12300g PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.2e-47
Identity = 110/176 (62.50%), Postives = 133/176 (75.57%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHS 60
           +N+VP     A EE  ++   E+EEES      G  PRKKL LSK QSRLLE+ FR +HS
Sbjct: 28  INQVP---SGAAEEEWISAGMEDEEESTD----GAPPRKKLRLSKEQSRLLEESFRQHHS 87

Query: 61  LNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRE 120
           LNP+QKEALA+ L+L+PRQVEVWFQNRRARSKLKQTEME +YL+RWFGSLTEQNRRL+RE
Sbjct: 88  LNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQRE 147

Query: 121 LEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIA 177
           +EELRA+KV  P V S H R+ PLP ST+TMCP+C+RVT   +       T+TA+A
Sbjct: 148 VEELRALKVGPPTVISPHSRE-PLPASTLTMCPRCERVTTTGVDKGSTKTTRTAVA 195

BLAST of CmaCh15G009410 vs. TrEMBL
Match: B9SJ50_RICCO (Homeobox protein, putative OS=Ricinus communis GN=RCOM_0843040 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.6e-46
Identity = 114/189 (60.32%), Postives = 138/189 (73.02%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHS 60
           +N++P       EE  +    E+EEES   N  GG PRKKL LSK QSRLLE+ FR +H+
Sbjct: 38  INQLPA---GVAEEEWITAGIEDEEES---NINGGPPRKKLRLSKEQSRLLEESFRQHHT 97

Query: 61  LNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRE 120
           LNP+QKEALAM L+L+PRQVEVWFQNRRARSKLKQTEME +YL+RWFGSLTEQNRRL+RE
Sbjct: 98  LNPRQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQRE 157

Query: 121 LEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTAT 180
           +EELRA+KV  P V S H  + PLP ST+TMCP+C+RVT +T T++      T  AT AT
Sbjct: 158 VEELRAMKVGPPTVLSPHSCE-PLPASTLTMCPRCERVTTSTNTAAAFDKGPTRTATPAT 217

Query: 181 PPKAVRSAL 190
            P    + L
Sbjct: 218 TPTTAVATL 219

BLAST of CmaCh15G009410 vs. TAIR10
Match: AT2G01430.1 (AT2G01430.1 homeobox-leucine zipper protein 17)

HSP 1 Score: 161.8 bits (408), Expect = 4.4e-40
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 1

Query: 24  EEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVW 83
           ++E  S ++G   PRKKL L++ QSRLLED FR NH+LNPKQKE LA  L L+PRQ+EVW
Sbjct: 124 DDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVW 183

Query: 84  FQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQPP 143
           FQNRRARSKLKQTEME +YL+RWFGSLTE+N RL RE+EELRA+KV    V+S+      
Sbjct: 184 FQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNSA------ 243

Query: 144 LPVSTITMCPQCKRVTAATITSSRAAATQTAIAT 178
              S++TMCP+C+RVT A  + SRA     A  T
Sbjct: 244 ---SSLTMCPRCERVTPAA-SPSRAVVPVPAKKT 267

BLAST of CmaCh15G009410 vs. TAIR10
Match: AT1G70920.1 (AT1G70920.1 homeobox-leucine zipper protein 18)

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-33
Identity = 86/168 (51.19%), Postives = 105/168 (62.50%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHS 60
           +N+ P   E  E          E++     +N GG+ RKKL L+K QS LLE+ F  NH+
Sbjct: 36  INQTPKTEEDREWMIGATPHVNEDD-----SNSGGRRRKKLRLTKEQSHLLEESFIQNHT 95

Query: 61  LNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRE 120
           L PKQK+ LA  L+L  RQVEVWFQNRRARSKLK TEME +YL+RWFGSL EQNRRL+ E
Sbjct: 96  LTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIE 155

Query: 121 LEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRA 169
           +EELRA+K              P   S +TMCP+C+RVT A    S A
Sbjct: 156 VEELRALK--------------PSSTSALTMCPRCERVTDAVDNDSNA 184

BLAST of CmaCh15G009410 vs. TAIR10
Match: AT5G06710.1 (AT5G06710.1 homeobox from Arabidopsis thaliana)

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-31
Identity = 83/177 (46.89%), Postives = 114/177 (64.41%), Query Frame = 1

Query: 12  EEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAM 71
           E ER+ +  + E+ +     +  G  RKKL LSK QS  LED F+ + +LNPKQK ALA 
Sbjct: 168 EVERSASRASNEDND-----DENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAK 227

Query: 72  ALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVAL 131
            L L+PRQVEVWFQNRRAR+KLKQTE++ +YL+R   SLTE+NRRL++E++ELR +K + 
Sbjct: 228 QLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTST 287

Query: 132 PAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSA 189
           P           LP +T+TMCP C+RV  +    S +AA    ++T++  P   R A
Sbjct: 288 PF-------YMQLPATTLTMCPSCERVATSAAQPSTSAAHNLCLSTSSLIPVKPRPA 332

BLAST of CmaCh15G009410 vs. TAIR10
Match: AT2G44910.1 (AT2G44910.1 homeobox-leucine zipper protein 4)

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-30
Identity = 88/192 (45.83%), Postives = 122/192 (63.54%), Query Frame = 1

Query: 8   GEAAEEERAVAERTEEEEESCSINNGGGQ-PRKKLSLSKHQSRLLEDIFRHNHSLNPKQK 67
           G+  E ERA   R      S   + G G   RKKL LSK Q+ +LE+ F+ + +LNPKQK
Sbjct: 131 GDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQK 190

Query: 68  EALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRA 127
            ALA  L L+ RQVEVWFQNRRAR+KLKQTE++ +YL+R   +LTE+NRRL++E+ ELRA
Sbjct: 191 LALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRA 250

Query: 128 IKVALPAVDSSHGRQPPLPVSTITMCPQCKRV--TAATITSSRAAATQTAIATTATPPKA 187
           +K+      S H      P +T+TMCP C+RV  +AAT+T++ +  T   +    +P + 
Sbjct: 251 LKL------SPHLYMHMTPPTTLTMCPSCERVSSSAATVTAAPSTTTTPTVVGRPSPQRL 310

Query: 188 VR-SALKLQQPS 196
              +A+ LQQ S
Sbjct: 311 TPWTAISLQQKS 316

BLAST of CmaCh15G009410 vs. TAIR10
Match: AT3G60390.1 (AT3G60390.1 homeobox-leucine zipper protein 3)

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-29
Identity = 85/190 (44.74%), Postives = 119/190 (62.63%), Query Frame = 1

Query: 19  ERTEEEEESCSIN----------NGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEA 78
           E  E E  SCS+           NG    RKKL LSK Q+ +LE+ F+ + +LNPKQK A
Sbjct: 132 EDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMA 191

Query: 79  LAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIK 138
           LA  L L+ RQVEVWFQNRRAR+KLKQTE++ +YL+R   +LT++NRRL++E+ ELRA+K
Sbjct: 192 LAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALK 251

Query: 139 VALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSA 198
           +      S H      P +T+TMCP C+RV  A  +SS + A     +++   P +  +A
Sbjct: 252 L------SPHLYMHMKPPTTLTMCPSCERV--AVTSSSSSVAPPVMNSSSPMGPMSPWAA 311

BLAST of CmaCh15G009410 vs. NCBI nr
Match: gi|778704059|ref|XP_011655468.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-54
Identity = 135/198 (68.18%), Postives = 152/198 (76.77%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGG-QPRKKLSLSKHQSRLLEDIFRHNH 60
           MNRVP  GEA EE+ A     EE EE  SINN GG QPRKKL LSK QSRLLE+ FR NH
Sbjct: 38  MNRVPAEGEA-EEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEESFRLNH 97

Query: 61  SLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRR 120
           +LNPKQKE LAM L+LKPRQVEVWFQNRRARSKLKQTE+E +Y++R FGSLTEQNRRL+ 
Sbjct: 98  TLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQW 157

Query: 121 ELEELRAIKVALPAVDSSHGRQPPLPV-STITMCPQCKRVTAATITSSRAAATQTAIATT 180
           ELEELRAIKVA PAV S H R PPL + STIT+CP+C+R+    I+S    A QTA   T
Sbjct: 158 ELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERI----ISSKNTVADQTATTAT 217

Query: 181 ATPPKAVRSALKLQQPSQ 197
           A P K V SAL+L+QPSQ
Sbjct: 218 AMPSKVVLSALQLRQPSQ 230

BLAST of CmaCh15G009410 vs. NCBI nr
Match: gi|700196341|gb|KGN51518.1| (hypothetical protein Csa_5G576600 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-54
Identity = 135/198 (68.18%), Postives = 152/198 (76.77%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGG-QPRKKLSLSKHQSRLLEDIFRHNH 60
           MNRVP  GEA EE+ A     EE EE  SINN GG QPRKKL LSK QSRLLE+ FR NH
Sbjct: 17  MNRVPAEGEA-EEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEESFRLNH 76

Query: 61  SLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRR 120
           +LNPKQKE LAM L+LKPRQVEVWFQNRRARSKLKQTE+E +Y++R FGSLTEQNRRL+ 
Sbjct: 77  TLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQW 136

Query: 121 ELEELRAIKVALPAVDSSHGRQPPLPV-STITMCPQCKRVTAATITSSRAAATQTAIATT 180
           ELEELRAIKVA PAV S H R PPL + STIT+CP+C+R+    I+S    A QTA   T
Sbjct: 137 ELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERI----ISSKNTVADQTATTAT 196

Query: 181 ATPPKAVRSALKLQQPSQ 197
           A P K V SAL+L+QPSQ
Sbjct: 197 AMPSKVVLSALQLRQPSQ 209

BLAST of CmaCh15G009410 vs. NCBI nr
Match: gi|659072906|ref|XP_008467159.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 1.5e-50
Identity = 128/199 (64.32%), Postives = 147/199 (73.87%), Query Frame = 1

Query: 1   MNRVPVVGEAAEE--ERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHN 60
           MNRVP  GEA  +       E   EEE S + NNGG QPRKKL LSK QSRLLE+ FR N
Sbjct: 38  MNRVPAEGEAEADWARGQSVEEEGEEESSINNNNGGTQPRKKLRLSKDQSRLLEESFRLN 97

Query: 61  HSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLR 120
           H+LNPKQKE LAM L+LKPRQVEVWFQNRRARSKLKQTE+E +Y++R FGSLTEQNRRL+
Sbjct: 98  HTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQ 157

Query: 121 RELEELRAIKVALPAVDSSHGR-QPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIAT 180
            ELEELRAIKVA PAV S H R QPPL  STIT+CP+C+R+T+   T +  A T      
Sbjct: 158 WELEELRAIKVAPPAVVSRHNRSQPPLSRSTITICPRCERITSNKNTVAENATT----TA 217

Query: 181 TATPPKAVRSALKLQQPSQ 197
           TA   + V SALKL+QPS+
Sbjct: 218 TAMQSEVVLSALKLRQPSR 232

BLAST of CmaCh15G009410 vs. NCBI nr
Match: gi|698515821|ref|XP_009802790.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like [Nicotiana sylvestris])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 111/164 (67.68%), Postives = 131/164 (79.88%), Query Frame = 1

Query: 1   MNRVPVVGEAAEEERAVAERTEEEEESCSINN-GGGQPRKKLSLSKHQSRLLEDIFRHNH 60
           +N+VP  G   EEE ++ E   EEEESC+IN   GG+PRKKL L+K QS LLE+ FR NH
Sbjct: 43  INQVPSNGNINEEEISIEE---EEEESCNINGVNGGRPRKKLRLTKEQSFLLEESFRQNH 102

Query: 61  SLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRR 120
           +LNPKQKEALAM L+LKPRQVEVWFQNRRARSKLKQTE+E +YL+RWFGSLTEQNRRL++
Sbjct: 103 TLNPKQKEALAMQLKLKPRQVEVWFQNRRARSKLKQTELECEYLKRWFGSLTEQNRRLKK 162

Query: 121 ELEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATI 164
           E++ELRA+KV  P V S H  Q P P ST+TMCP C+RVTA  I
Sbjct: 163 EVQELRAMKVGPPTVLSPHSCQ-PRPASTLTMCPHCERVTATII 202

BLAST of CmaCh15G009410 vs. NCBI nr
Match: gi|567911909|ref|XP_006448268.1| (hypothetical protein CICLE_v10016477mg [Citrus clementina])

HSP 1 Score: 195.3 bits (495), Expect = 1.0e-46
Identity = 110/169 (65.09%), Postives = 127/169 (75.15%), Query Frame = 1

Query: 22  EEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVE 81
           ++EEESC IN  GG PRKKL LSK QSRLLE+ FRHNH+LNPKQKE LA  L+LKPRQVE
Sbjct: 72  DDEEESC-INVDGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVE 131

Query: 82  VWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQ 141
           VWFQNRRARSKLKQTEME +YL+RWFGSLTEQNRRL+RE+EELRA+KV  P V S H  +
Sbjct: 132 VWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCE 191

Query: 142 PPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSALK 191
            PLP ST++MCP+C+RVT   I       T  +    A  PK    AL+
Sbjct: 192 -PLPASTLSMCPRCERVTTTAIDKGPTKVTTASSTPAALSPKVGTPALQ 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HOX3_ORYSI2.6e-4260.59Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 ... [more]
HOX3_ORYSJ2.6e-4260.59Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=... [more]
ATB17_ARATH7.8e-3959.74Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 ... [more]
ATHBX_ARATH5.4e-3251.19Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV... [more]
HOX1_ORYSI7.1e-3250.29Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A0A0KPM6_CUCSA7.1e-5568.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576600 PE=4 SV=1[more]
V4TLZ8_9ROSI7.1e-4765.09Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016477mg PE=4 SV=1[more]
A0A067FF13_CITSI7.1e-4765.09Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026325mg PE=4 SV=1[more]
B9HW68_POPTR9.2e-4762.50Homeobox-leucine zipper protein 17 OS=Populus trichocarpa GN=POPTR_0010s12300g P... [more]
B9SJ50_RICCO4.6e-4660.32Homeobox protein, putative OS=Ricinus communis GN=RCOM_0843040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G01430.14.4e-4059.74 homeobox-leucine zipper protein 17[more]
AT1G70920.13.0e-3351.19 homeobox-leucine zipper protein 18[more]
AT5G06710.14.9e-3146.89 homeobox from Arabidopsis thaliana[more]
AT2G44910.15.4e-3045.83 homeobox-leucine zipper protein 4[more]
AT3G60390.15.9e-2944.74 homeobox-leucine zipper protein 3[more]
Match NameE-valueIdentityDescription
gi|778704059|ref|XP_011655468.1|1.0e-5468.18PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis sativus][more]
gi|700196341|gb|KGN51518.1|1.0e-5468.18hypothetical protein Csa_5G576600 [Cucumis sativus][more]
gi|659072906|ref|XP_008467159.1|1.5e-5064.32PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis melo][more]
gi|698515821|ref|XP_009802790.1|3.2e-4867.68PREDICTED: homeobox-leucine zipper protein HOX3-like [Nicotiana sylvestris][more]
gi|567911909|ref|XP_006448268.1|1.0e-4665.09hypothetical protein CICLE_v10016477mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR003106Leu_zip_homeo
IPR009057Homeobox-like_sf
IPR017970Homeobox_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0044212 transcription regulatory region DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G009410.1CmaCh15G009410.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 38..92
score: 1.1
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 36..98
score: 1.3
IPR001356Homeobox domainPROFILEPS50071HOMEOBOX_2coord: 34..94
score: 16
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 94..127
score: 1.
IPR003106Leucine zipper, homeobox-associatedSMARTSM00340halzcoord: 94..137
score: 1.9
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 34..101
score: 2.8
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 28..95
score: 3.81
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 69..92
scor
NoneNo IPR availableunknownCoilCoilcoord: 107..127
scor
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 12..181
score: 2.2
NoneNo IPR availablePANTHERPTHR24326:SF114HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17-RELATEDcoord: 12..181
score: 2.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh15G009410CmaCh04G020890Cucurbita maxima (Rimu)cmacmaB315