CmaCh15G009350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G009350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr15 : 4956053 .. 4956370 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAAAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGTGTGAGAGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGGGGGGAAATATCGGGGAGGCAGTGGTCGGAAGAAGGAGGGGCGGGGTAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

mRNA sequence

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAAAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGTGTGAGAGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGGGGGGAAATATCGGGGAGGCAGTGGTCGGAAGAAGGAGGGGCGGGGTAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAAAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGTGTGAGAGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGGGGGGAAATATCGGGGAGGCAGTGGTCGGAAGAAGGAGGGGCGGGGTAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

Protein sequence

MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKVVGEGGNIGEAVVGRRRGGVEKGAEKGEEIGEEREEEERERLGGEVVELAL
Homology
[Close]
BLAST of CmaCh15G009350 vs. TrEMBL
Match: A0A0A0KUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGG--GIVGVRVAVREEAIEVKVVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GG  G+VGV V V E+AIE+++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  GGNIGEAVVGRRRGGVEKGAEKGEEIGEEREEEERERLGGEVVELAL 106
            G I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV+EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

[Close]
BLAST of CmaCh15G009350 vs. NCBI nr
Match: gi|700196349|gb|KGN51526.1| (hypothetical protein Csa_5G576680 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGG--GIVGVRVAVREEAIEVKVVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GG  G+VGV V V E+AIE+++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  GGNIGEAVVGRRRGGVEKGAEKGEEIGEEREEEERERLGGEVVELAL 106
            G I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV+EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

The following BLAST results are available for this feature:
BLAST of CmaCh15G009350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G009350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUZ6_CUCSA1.3e-1861.68Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1[more]
BLAST of CmaCh15G009350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh15G009350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196349|gb|KGN51526.1|1.8e-1861.68hypothetical protein Csa_5G576680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G009350.1CmaCh15G009350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G009350CmoCh15G009750Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G009350Cp4.1LG13g06980Cucurbita pepo (Zucchini)cmacpeB305
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G009350Melon (DHL92) v3.6.1cmamedB293
CmaCh15G009350Melon (DHL92) v3.6.1cmamedB301
CmaCh15G009350Silver-seed gourdcarcmaB0460
CmaCh15G009350Silver-seed gourdcarcmaB1101
CmaCh15G009350Silver-seed gourdcarcmaB1161
CmaCh15G009350Silver-seed gourdcarcmaB1455
CmaCh15G009350Cucumber (Chinese Long) v3cmacucB0346
CmaCh15G009350Cucumber (Chinese Long) v3cmacucB0355
CmaCh15G009350Watermelon (97103) v2cmawmbB308
CmaCh15G009350Watermelon (97103) v2cmawmbB286
CmaCh15G009350Wax gourdcmawgoB0366
CmaCh15G009350Wax gourdcmawgoB0407
CmaCh15G009350Cucurbita maxima (Rimu)cmacmaB305
CmaCh15G009350Cucurbita maxima (Rimu)cmacmaB315
CmaCh15G009350Cucurbita maxima (Rimu)cmacmaB329
CmaCh15G009350Cucumber (Gy14) v1cgycmaB0775
CmaCh15G009350Cucumber (Gy14) v1cgycmaB0796
CmaCh15G009350Watermelon (Charleston Gray)cmawcgB265
CmaCh15G009350Cucurbita moschata (Rifu)cmacmoB301
CmaCh15G009350Cucurbita moschata (Rifu)cmacmoB293
CmaCh15G009350Cucurbita moschata (Rifu)cmacmoB312
CmaCh15G009350Wild cucumber (PI 183967)cmacpiB301
CmaCh15G009350Wild cucumber (PI 183967)cmacpiB306
CmaCh15G009350Cucumber (Chinese Long) v2cmacuB295
CmaCh15G009350Cucumber (Chinese Long) v2cmacuB301
CmaCh15G009350Melon (DHL92) v3.5.1cmameB258
CmaCh15G009350Melon (DHL92) v3.5.1cmameB264
CmaCh15G009350Watermelon (Charleston Gray)cmawcgB257
CmaCh15G009350Watermelon (97103) v1cmawmB270
CmaCh15G009350Watermelon (97103) v1cmawmB273
CmaCh15G009350Cucurbita pepo (Zucchini)cmacpeB300
CmaCh15G009350Cucurbita pepo (Zucchini)cmacpeB310
CmaCh15G009350Cucurbita pepo (Zucchini)cmacpeB323
CmaCh15G009350Bottle gourd (USVL1VR-Ls)cmalsiB263
CmaCh15G009350Bottle gourd (USVL1VR-Ls)cmalsiB283
CmaCh15G009350Cucumber (Gy14) v2cgybcmaB606
CmaCh15G009350Cucumber (Gy14) v2cgybcmaB611