Cp4.1LG13g06980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g06980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG13 : 4205872 .. 4206189 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCCGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGAGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGATGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGAAAAAGGAGGGGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGCTGAGTTGGCTCTGTAA

mRNA sequence

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCCGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGAGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGATGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGAAAAAGGAGGGGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGCTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCCGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGAGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGATGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGAAAAAGGAGGGGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGCTGAGTTGGCTCTGTAA

Protein sequence

MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKMVGERGNIGEAVVGKRRGGGEKGAEKGEEIGEEREEEERERLGGEVAELAL
Homology
[Close]
BLAST of Cp4.1LG13g06980 vs. TrEMBL
Match: A0A0A0KUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-19
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGG--GIVGVRVAVREEAIEVKMVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GG  G+VGV V V E+AIE++MVG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIGEAVVGKRRGGGEKGAEKGEEIGEEREEEERERLGGEVAELAL 106
           RG I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

[Close]
BLAST of Cp4.1LG13g06980 vs. NCBI nr
Match: gi|700196349|gb|KGN51526.1| (hypothetical protein Csa_5G576680 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.8e-19
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGG--GIVGVRVAVREEAIEVKMVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GG  G+VGV V V E+AIE++MVG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIGEAVVGKRRGGGEKGAEKGEEIGEEREEEERERLGGEVAELAL 106
           RG I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g06980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g06980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUZ6_CUCSA3.3e-1963.55Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1[more]
BLAST of Cp4.1LG13g06980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g06980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196349|gb|KGN51526.1|4.8e-1963.55hypothetical protein Csa_5G576680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g06980.1Cp4.1LG13g06980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g06980CmaCh15G009350Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g06980CmoCh15G009750Cucurbita moschata (Rifu)cmocpeB268
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g06980Watermelon (Charleston Gray)cpewcgB172
Cp4.1LG13g06980Watermelon (Charleston Gray)cpewcgB169
Cp4.1LG13g06980Watermelon (97103) v1cpewmB178
Cp4.1LG13g06980Watermelon (97103) v1cpewmB188
Cp4.1LG13g06980Melon (DHL92) v3.5.1cpemeB149
Cp4.1LG13g06980Melon (DHL92) v3.5.1cpemeB160
Cp4.1LG13g06980Cucumber (Gy14) v2cgybcpeB616
Cp4.1LG13g06980Cucumber (Gy14) v2cgybcpeB600
Cp4.1LG13g06980Melon (DHL92) v3.6.1cpemedB176
Cp4.1LG13g06980Melon (DHL92) v3.6.1cpemedB187
Cp4.1LG13g06980Silver-seed gourdcarcpeB0458
Cp4.1LG13g06980Silver-seed gourdcarcpeB1111
Cp4.1LG13g06980Silver-seed gourdcarcpeB1175
Cp4.1LG13g06980Silver-seed gourdcarcpeB1465
Cp4.1LG13g06980Cucumber (Chinese Long) v3cpecucB0212
Cp4.1LG13g06980Cucumber (Chinese Long) v3cpecucB0228
Cp4.1LG13g06980Wax gourdcpewgoB0227
Cp4.1LG13g06980Wax gourdcpewgoB0260
Cp4.1LG13g06980Cucurbita pepo (Zucchini)cpecpeB022
Cp4.1LG13g06980Cucurbita pepo (Zucchini)cpecpeB205
Cp4.1LG13g06980Cucumber (Gy14) v1cgycpeB0747
Cp4.1LG13g06980Cucumber (Gy14) v1cgycpeB0735
Cp4.1LG13g06980Cucurbita maxima (Rimu)cmacpeB422
Cp4.1LG13g06980Cucurbita maxima (Rimu)cmacpeB710
Cp4.1LG13g06980Cucurbita moschata (Rifu)cmocpeB383
Cp4.1LG13g06980Cucurbita moschata (Rifu)cmocpeB659
Cp4.1LG13g06980Cucurbita moschata (Rifu)cmocpeB663
Cp4.1LG13g06980Wild cucumber (PI 183967)cpecpiB179
Cp4.1LG13g06980Wild cucumber (PI 183967)cpecpiB192
Cp4.1LG13g06980Cucumber (Chinese Long) v2cpecuB177
Cp4.1LG13g06980Cucumber (Chinese Long) v2cpecuB190
Cp4.1LG13g06980Bottle gourd (USVL1VR-Ls)cpelsiB135
Cp4.1LG13g06980Bottle gourd (USVL1VR-Ls)cpelsiB148