CmaCh15G009350.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G009350.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr15 : 4956053 .. 4956370 (-)
Sequence length	318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAAAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGTGTGAGAGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGGGGGGAAATATCGGGGAGGCAGTGGTCGGAAGAAGGAGGGGCGGGGTAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

mRNA sequence

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAAAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGTGTGAGAGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGGGGGGAAATATCGGGGAGGCAGTGGTCGGAAGAAGGAGGGGCGGGGTAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAAAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGTGTGAGAGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGGGGGGAAATATCGGGGAGGCAGTGGTCGGAAGAAGGAGGGGCGGGGTAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

Protein sequence

MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKVVGEGGNIGEAVVGRRRGGVEKGAEKGEEIGEEREEEERERLGGEVVELAL

Homology

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BLAST of CmaCh15G009350.1 vs. TrEMBL
Match: A0A0A0KUZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1


Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGG--GIVGVRVAVREEAIEVKVVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GG  G+VGV V V E+AIE+++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  GGNIGEAVVGRRRGGVEKGAEKGEEIGEEREEEERERLGGEVVELAL 106
            G I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV+EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

[Close]

BLAST of CmaCh15G009350.1 vs. NCBI nr
Match: gi|700196349|gb|KGN51526.1| (hypothetical protein Csa_5G576680 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1


Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGG--GIVGVRVAVREEAIEVKVVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GG  G+VGV V V E+AIE+++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  GGNIGEAVVGRRRGGVEKGAEKGEEIGEEREEEERERLGGEVVELAL 106
            G I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV+EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

The following BLAST results are available for this feature:

BLAST of CmaCh15G009350.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G009350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUZ6_CUCSA	1.3e-18	61.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576680 PE=4 SV=1	[more]

BLAST of CmaCh15G009350.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh15G009350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196349\|gb\|KGN51526.1\|	1.8e-18	61.68	hypothetical protein Csa_5G576680 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh15G009350	CmaCh15G009350	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh15G009350.1	CmaCh15G009350.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh15G009350.1.CDS.1	CmaCh15G009350.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh15G009350.1.exon.1	CmaCh15G009350.1.exon.1	exon