CmaCh14G015310 (gene) Cucurbita maxima (Rimu)

NameCmaCh14G015310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRALF
LocationCma_Chr14 : 11587261 .. 11587605 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAAGCTCAAGCCATTCAAGCCTCAACCTCGTCCTCGGCCTTCTATATCTATTGATTTTTACTAACGTCGTCGTTGTCGTCGCAGTCGATAGCTCAATAAGCCTGTGCAATGGTTCGATAGCGGAGTGCTATAAAGAGGTTGAGACGTTGATGGAGTCGGAGATAACTCGGAGGTTTCTTGGACAAGTTAATGAATTAACCTATAAATTTTTGGATAAAGACAAAGCACCTTGTGCTAATGGTAGAGGTAAACCTTACTTTGTAAAGTGTCAGCCTCGTGAAGCTAATCATTATGACAGGAGATGCAGCGGAACGTATAATCGATGTAAATTTTCATAG

mRNA sequence

ATGGAAGGAAGCTCAAGCCATTCAAGCCTCAACCTCGTCCTCGGCCTTCTATATCTATTGATTTTTACTAACGTCGTCGTTGTCGTCGCAGTCGATAGCTCAATAAGCCTGTGCAATGGTTCGATAGCGGAGTGCTATAAAGAGGTTGAGACGTTGATGGAGTCGGAGATAACTCGGAGGTTTCTTGGACAAGTTAATGAATTAACCTATAAATTTTTGGATAAAGACAAAGCACCTTGTGCTAATGGTAGAGGTAAACCTTACTTTGTAAAGTGTCAGCCTCGTGAAGCTAATCATTATGACAGGAGATGCAGCGGAACGTATAATCGATGTAAATTTTCATAG

Coding sequence (CDS)

ATGGAAGGAAGCTCAAGCCATTCAAGCCTCAACCTCGTCCTCGGCCTTCTATATCTATTGATTTTTACTAACGTCGTCGTTGTCGTCGCAGTCGATAGCTCAATAAGCCTGTGCAATGGTTCGATAGCGGAGTGCTATAAAGAGGTTGAGACGTTGATGGAGTCGGAGATAACTCGGAGGTTTCTTGGACAAGTTAATGAATTAACCTATAAATTTTTGGATAAAGACAAAGCACCTTGTGCTAATGGTAGAGGTAAACCTTACTTTGTAAAGTGTCAGCCTCGTGAAGCTAATCATTATGACAGGAGATGCAGCGGAACGTATAATCGATGTAAATTTTCATAG

Protein sequence

MEGSSSHSSLNLVLGLLYLLIFTNVVVVVAVDSSISLCNGSIAECYKEVETLMESEITRRFLGQVNELTYKFLDKDKAPCANGRGKPYFVKCQPREANHYDRRCSGTYNRCKFS
BLAST of CmaCh14G015310 vs. Swiss-Prot
Match: RLF32_ARATH (Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1

Query: 28  VVAVDSSISLCNGSIAECYKEVET-----LMESEITRRFL-GQVNELTYKFLDKDKAPCA 87
           V +  SS SLCNGS+AEC   VET     +MES  ++R    Q ++L+Y  L +++  C 
Sbjct: 24  VTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLSYGALRRNQPACD 83

Query: 88  NG-RGKPYFVKCQPREANHYDRRCSGTYNRC 112
            G RG+ Y  +C P  +N Y R CS  Y RC
Sbjct: 84  GGKRGESYSTQCLPPPSNPYSRGCSKHY-RC 113

BLAST of CmaCh14G015310 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1

Query: 38  CNGSIAECYKEVETLMESEITRRFLGQVNELTYKFLDKDKAPCANGRGKPYFVKCQPREA 97
           C+GSIAEC    E  M+SEI RR L     ++Y+ L ++  PC+  RG  Y+      +A
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSR-RGASYYNCQNGAQA 106

Query: 98  NHYDRRCS 106
           N Y R CS
Sbjct: 107 NPYSRGCS 113

BLAST of CmaCh14G015310 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1

Query: 33  SSISLCNGSIAECYKEVETL-MESEITRRFLGQVNELTYKFLDKDKAPCANGRGKPYFVK 92
           S  S C GSIAEC  E E +  +S+I+RR L Q   ++Y  + ++  PC+  RG  Y+  
Sbjct: 40  SLFSGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSR-RGASYYNC 99

Query: 93  CQPREANHYDRRCSGTYNRCK 113
            +  +AN Y R CS T  RC+
Sbjct: 100 QRGAQANPYSRGCS-TITRCR 118

BLAST of CmaCh14G015310 vs. TrEMBL
Match: A0A0A0L624_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171850 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 44/97 (45.36%), Postives = 53/97 (54.64%), Query Frame = 1

Query: 9   SLNLVLGLLYLLIFTNVVVVVAVDSSISLCNGSIAECYKEVETLMESEITRRFLGQ--VN 68
           SL     LL  L F    + +   SS+  CNGSIAEC  E E LMESEITRRFL Q   N
Sbjct: 2   SLQTCFLLLLFLSFLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQKKN 61

Query: 69  ELTYKFLDKDKAPCANGRGKPYFV--KCQPREANHYD 102
            ++Y  L KD+  C    G+PY     C P +AN Y+
Sbjct: 62  YISYPTLKKDRPACDGASGQPYTKSGSCVPSQANPYN 98

BLAST of CmaCh14G015310 vs. TrEMBL
Match: B7FMN1_MEDTR (RALF OS=Medicago truncatula GN=MTR_8g083150 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 1

Query: 5   SSHSSLNLVLGLLYLLI-FTNVVVVVAVDSS----ISLCNGSIAECYKEVETLMESEITR 64
           +S S++ L+    ++L  F N+   V   SS     S+CNGSIAEC +E E LMESEI+R
Sbjct: 2   ASKSTIKLLTFFYFMLFGFMNLSSTVISLSSNHHHASICNGSIAECNQEDEQLMESEISR 61

Query: 65  RFLGQVNELTYKFLDKDKAPCANGRGKPYFVK---CQPREANHYDRRCSGTYNRCK 113
           RFL Q   ++   L +DK  C  G G   + K   C P  +N Y+R CS  Y RC+
Sbjct: 62  RFLEQRRYISEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNPYNRGCS-KYYRCR 116

BLAST of CmaCh14G015310 vs. TrEMBL
Match: A0A072TUW6_MEDTR (RALF OS=Medicago truncatula GN=MTR_8g083150 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 1

Query: 5   SSHSSLNLVLGLLYLLI-FTNVVVVVAVDSS----ISLCNGSIAECYKEVETLMESEITR 64
           +S S++ L+    ++L  F N+   V   SS     S+CNGSIAEC +E E LMESEI+R
Sbjct: 2   ASKSTIKLLTFFYFMLFGFMNLSSTVISLSSNHHHASICNGSIAECNQEDEQLMESEISR 61

Query: 65  RFLGQVNELTYKFLDKDKAPCANGRGKPYFVK---CQPREANHYDRRCSGTYNRCK 113
           RFL Q   ++   L +DK  C  G G   + K   C P  +N Y+R CS  Y RC+
Sbjct: 62  RFLEQRRYISEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNPYNRGCS-KYYRCR 116

BLAST of CmaCh14G015310 vs. TrEMBL
Match: A0A0A0L9A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 50/106 (47.17%), Postives = 63/106 (59.43%), Query Frame = 1

Query: 12  LVLGLLYLLIFTNVVVVVAVDSSISLCNGSIAECYKEVETLMESEITRRFLGQVNE-LTY 71
           L+L  L+L +F ++ +V A  SS   CNGSIA C  E E LMESEITRRFL Q  + ++ 
Sbjct: 24  LLLLFLFLFLFQDLCLVRA--SSTHSCNGSIAACANEEEMLMESEITRRFLEQQKKYISI 83

Query: 72  KFLDKDKAPC--ANGRGKPY--FVKCQPREANHYDRRCSGTYNRCK 113
             L KD   C  A+G G+PY     C P  AN Y+R CS  Y RC+
Sbjct: 84  GALKKDHPACDGASG-GQPYTRSGSCAPPPANPYNRGCSKIY-RCR 125

BLAST of CmaCh14G015310 vs. TrEMBL
Match: A0A151SJC7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_001065 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1

Query: 28  VVAVDSSISLCNGSIAECYKEVETLMESEITRRFLGQVNELTYKFLDKDKAPCANGRGKP 87
           V+++ S  S CNGSI+EC +E E LMESEI+RRFL Q   ++   L +DK  C  G    
Sbjct: 8   VISLTSHASTCNGSISECNQEDELLMESEISRRFLEQKRYISNGALQRDKPVCNGGGSGE 67

Query: 88  YFVK---CQPREANHYDRRCSGTYNRCK 113
            + K   C P  +N  +R CS  Y RC+
Sbjct: 68  AYSKTGGCLPPPSNPQNRGCS-KYYRCR 94

BLAST of CmaCh14G015310 vs. TAIR10
Match: AT4G14010.1 (AT4G14010.1 ralf-like 32)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-09
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1

Query: 28  VVAVDSSISLCNGSIAECYKEVET-----LMESEITRRFL-GQVNELTYKFLDKDKAPCA 87
           V +  SS SLCNGS+AEC   VET     +MES  ++R    Q ++L+Y  L +++  C 
Sbjct: 24  VTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLSYGALRRNQPACD 83

Query: 88  NG-RGKPYFVKCQPREANHYDRRCSGTYNRC 112
            G RG+ Y  +C P  +N Y R CS  Y RC
Sbjct: 84  GGKRGESYSTQCLPPPSNPYSRGCSKHY-RC 113

BLAST of CmaCh14G015310 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-08
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1

Query: 38  CNGSIAECYKEVETLMESEITRRFLGQVNELTYKFLDKDKAPCANGRGKPYFVKCQPREA 97
           C+GSIAEC    E  M+SEI RR L     ++Y+ L ++  PC+  RG  Y+      +A
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSR-RGASYYNCQNGAQA 106

Query: 98  NHYDRRCS 106
           N Y R CS
Sbjct: 107 NPYSRGCS 113

BLAST of CmaCh14G015310 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-08
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1

Query: 33  SSISLCNGSIAECYKEVETL-MESEITRRFLGQVNELTYKFLDKDKAPCANGRGKPYFVK 92
           S  S C GSIAEC  E E +  +S+I+RR L Q   ++Y  + ++  PC+  RG  Y+  
Sbjct: 40  SLFSGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSR-RGASYYNC 99

Query: 93  CQPREANHYDRRCSGTYNRCK 113
            +  +AN Y R CS T  RC+
Sbjct: 100 QRGAQANPYSRGCS-TITRCR 118

BLAST of CmaCh14G015310 vs. NCBI nr
Match: gi|720097363|ref|XP_010247297.1| (PREDICTED: protein RALF-like 32 [Nelumbo nucifera])

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 51/116 (43.97%), Postives = 66/116 (56.90%), Query Frame = 1

Query: 1   MEGSSSHSSLNLVLGLLYLL--IFTNVVVVVAVDSS--ISLCNGSIAECYKEVETLMESE 60
           M  SS+ SSL  +L  L LL  +++  V V A +SS     CNGSIAEC +E E LMESE
Sbjct: 39  MAASSNRSSLGFILATLLLLQLLYSGCVRVSAAESSERYRQCNGSIAECSEEEEVLMESE 98

Query: 61  ITRRFLGQVNELTYKFLDKDKAPCANGRGKPYFVKCQPREANHYDRRCSGTYNRCK 113
           I+RRFL Q N + Y  L  ++  C   +G  Y   C P  +N  +R CS  Y RC+
Sbjct: 99  ISRRFLAQSNSIGYGALKPNQPACGGPKGTSYSGSCLPNPSNPQNRGCSKIY-RCR 153

BLAST of CmaCh14G015310 vs. NCBI nr
Match: gi|720097359|ref|XP_010247296.1| (PREDICTED: protein RALF-like 32 [Nelumbo nucifera])

HSP 1 Score: 75.1 bits (183), Expect = 8.9e-11
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1

Query: 39  NGSIAECYKEVETLMESEITRRFLGQVNELTYKFLDKDKAPCANG-RGKPYFVKCQPREA 98
           N SIAEC +E E LMESEI+RRFL Q N ++Y  L  D+A C NG RGKPY   C P  +
Sbjct: 44  NDSIAECSREEEGLMESEISRRFLEQTNRISYGALKSDQATCGNGARGKPYSNSCLPTPS 103

Query: 99  NHYDRRCSGTYNRCK 113
           N  +R C   Y RC+
Sbjct: 104 NTVNRGCFKVY-RCR 117

BLAST of CmaCh14G015310 vs. NCBI nr
Match: gi|1012104675|ref|XP_015958329.1| (PREDICTED: protein RALF-like 32 [Arachis duranensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1

Query: 38  CNGSIAECYKEVETLMESEITRRFLGQVNELTYKFLDKDKAPCANGRGKPYFVK--CQPR 97
           CNGSIAEC +E E LMESEI+RRFL +   ++Y  L +DK  C   RG+ Y     C P 
Sbjct: 39  CNGSIAECNQEYEMLMESEISRRFLEEKKYISYGALGRDKPACNGERGEAYSKNEGCLPP 98

Query: 98  EANHYDRRCSGTYNRCK 113
            +N  +R CS  Y RC+
Sbjct: 99  PSNPENRGCS-KYYRCR 114

BLAST of CmaCh14G015310 vs. NCBI nr
Match: gi|697128698|ref|XP_009618400.1| (PREDICTED: protein RALF-like 32 [Nicotiana tomentosiformis])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 42/112 (37.50%), Postives = 69/112 (61.61%), Query Frame = 1

Query: 3   GSSSHSSLNLVLGLLYLLIFTNVVVVVAVDSSISLCNGSIAECYKEVETLMESEITRRFL 62
           GSS+ ++L     + +  IF  ++ ++   +  S CNG+IAEC +E+E LMES+I+RRFL
Sbjct: 24  GSSNFTTL-----IHFFTIFLTLLFIITSVTGQSPCNGTIAECNEELEILMESDISRRFL 83

Query: 63  GQVNE-LTYKFLDKDKAPC-ANGRGKPYFVKCQPREANHYDRRCSGTYNRCK 113
            +  + ++   L +D+  C + G G+PY  +C P  +N Y+R CS  Y RC+
Sbjct: 84  EERKKYISPGALKRDQPVCNSGGGGEPYSRRCLPPPSNPYNRGCS-KYYRCR 129

BLAST of CmaCh14G015310 vs. NCBI nr
Match: gi|700202095|gb|KGN57228.1| (hypothetical protein Csa_3G171850 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-08
Identity = 44/97 (45.36%), Postives = 53/97 (54.64%), Query Frame = 1

Query: 9   SLNLVLGLLYLLIFTNVVVVVAVDSSISLCNGSIAECYKEVETLMESEITRRFLGQ--VN 68
           SL     LL  L F    + +   SS+  CNGSIAEC  E E LMESEITRRFL Q   N
Sbjct: 2   SLQTCFLLLLFLSFLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQKKN 61

Query: 69  ELTYKFLDKDKAPCANGRGKPYFV--KCQPREANHYD 102
            ++Y  L KD+  C    G+PY     C P +AN Y+
Sbjct: 62  YISYPTLKKDRPACDGASGQPYTKSGSCVPSQANPYN 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RLF32_ARATH1.2e-0741.76Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1[more]
RLF1_ARATH1.3e-0641.18Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1[more]
RLF22_ARATH1.3e-0639.51Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L624_CUCSA2.2e-0845.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171850 PE=4 SV=1[more]
B7FMN1_MEDTR3.7e-0841.38RALF OS=Medicago truncatula GN=MTR_8g083150 PE=2 SV=1[more]
A0A072TUW6_MEDTR3.7e-0841.38RALF OS=Medicago truncatula GN=MTR_8g083150 PE=4 SV=1[more]
A0A0A0L9A8_CUCSA6.4e-0847.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1[more]
A0A151SJC7_CAJCA1.1e-0743.18Uncharacterized protein OS=Cajanus cajan GN=KK1_001065 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G14010.16.7e-0941.76 ralf-like 32[more]
AT1G02900.17.5e-0841.18 rapid alkalinization factor 1[more]
AT3G05490.17.5e-0839.51 ralf-like 22[more]
Match NameE-valueIdentityDescription
gi|720097363|ref|XP_010247297.1|2.1e-1243.97PREDICTED: protein RALF-like 32 [Nelumbo nucifera][more]
gi|720097359|ref|XP_010247296.1|8.9e-1153.33PREDICTED: protein RALF-like 32 [Nelumbo nucifera][more]
gi|1012104675|ref|XP_015958329.1|1.8e-0848.05PREDICTED: protein RALF-like 32 [Arachis duranensis][more]
gi|697128698|ref|XP_009618400.1|1.8e-0837.50PREDICTED: protein RALF-like 32 [Nicotiana tomentosiformis][more]
gi|700202095|gb|KGN57228.1|3.2e-0845.36hypothetical protein Csa_3G171850 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G015310.1CmaCh14G015310.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 50..112
score: 3.5
NoneNo IPR availablePANTHERPTHR33136FAMILY NOT NAMEDcoord: 12..111
score: 8.3
NoneNo IPR availablePANTHERPTHR33136:SF3PROTEIN RALF-LIKE 32coord: 12..111
score: 8.3

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G015310Cla021855Watermelon (97103) v1cmawmB242
CmaCh14G015310Lsi05G013600Bottle gourd (USVL1VR-Ls)cmalsiB246
CmaCh14G015310Cp4.1LG03g12260Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G015310Bhi01G000851Wax gourdcmawgoB0328
The following gene(s) are paralogous to this gene:

None