CmaCh13G003220 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G003220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mediator of RNA polymerase II transcription subunit 11
Location	Cma_Chr13 : 3726955 .. 3734750 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCTTTTCCATCTTCCTCTCTCACTCACTCTCACGTGTCTCACCTTCTTTTTCTTCTTCTTCCCGGCCGTCTCCTCCGTTTCAGCATCCCAGTGCCGTCGCCGCTTCTCTTCCGATCAGTGTTGCCGCCGCATCCTCACTCCTTGTTTTTACTGGTATTTTCCCGATCTCCATCTATGCGTTTCTTCTCACTAGAAAACACAAGTTAGGACTTGTCTAATGATGAAAGAAGGGAGGAGTTGTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTTTCATAAACAATAGCCAAATAGAAACGAGAAACAAAACACATCCTTCAGAAAATTGGGACTTCTCGAACAGCCGTGTTTTGCCTTTTGATTTGTTGCATATGTTCATCAATTGGGGCTTTAATCAAATTTGTATCTGTTCGGTCTCTTCTGGAAATTGCTCCTGTAACCATGAATCTTTTAGCATCTCCGTTCTTCTTTATTAAATAATCTATTGTATTATCCAATTCTCTTTTAGTCCTAAGCTTGTAGGAGTTAGTTTGATCGACCCAACAACTTCCACCATACTTTTATTTGTAGATTTGTAGATTATAGTTGGGGAGAACACGATGAACCTTTTCTTTAAATTTAAATTATCTCCTTCATTAACCAATAATCACTGATACTTCGAATTTACTTGAAATAAGATCCGTTAATAGCCGTCTATGTACTTCGTACTTCATGGTGTAAAAAGATATAGAAAATGTTCAAGCTTAAACAAGCGTGCTTTAATTTCCTTATCAGATGTTCTTTTCTATTATATGATTGAATTTTATCCTTATCAGATGTTCAATGATATCTAAAACCTGTGATCGGTTATGACTCTCAATTTGATGTTCCTTCCAAAGTTCATTTGAATTCTTTTGATTAGGGAACGCCGCTAGTCATGGAAATTCGTCTTGTAATTCATTATTTCAACAATTTAAGTTTAAGAGATGTTAACAGTTATGCGTACACTATTTTAGCTTTATTTATTTATTCTCTTAATTTTATTTTGTTCACAGATCAGTTAGTTTAAAATTCTTAATTGCTGTGAGATTTGTTACAGCCAGGATAGCTCTTGATGGATCCACTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGGTTGGACTAACTTTCTATTCCCTAAATTTTTTGTTTCTAGTTCTTTGCATGGTCTTTAATTGTACCACAAGATTTCTTACGGCCAATTTTTGTGTTCCATTCCTGCAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGTCTTCTGTGTTTGACAGTGGTTCTTCACGTCAAATGTTGTTTCAAATTTAGCTAGGTTTATCGCCTCACATTGGGCGTCTGTGTTTAACAACTTTTGTAATTATTTGCTGGTTTATTCTTAAACCCTTTTCTTCCTCAATTTTAGCTAGGTTAGGGCCTGTTGGGTTCCTTTTGGGGCGTCAATTTTGTAGGTCTAGTGTTTGTGTTGCAGTTGTTTATTTATTTATTATTTTGATTTGACCCTTCTGTCTTCTTTTGTTTCTTTTTCCTCCATGAAAGTTGGGTTCCTTTTGTACAATTTGGCAATTGATATCTTATTTGAATGCTTGGTTATTCGATCAAATGATTTTCAAGTTTAGCTTAAGGTTTCTATTCCGTAGACTGCTATTGCTTCATGTTTCCTTTTTTCTTCTCAAATTTTAATTGTTTGATGGACGATGGTGCTAACTATTATATTTTGGAGGATACTTGGGTGGAGATAAAACCCTTTGTGCTCTATTCCCACAACTCTATTACTTTTCAGATAGAGGATCGATTTGATAGCCTCTGGCTTGCCCTCTTTTGATAATTTCTTCTTGGTGTCCCTTGGTTTTCGTTGTTCCCTTACTGACTGACAGGCAGTGGAAGTTGCTGGTCTTCATTTCTATTATAATATATGTTATTTATTTATTTATTTTTTTTTTTTATGTATATTTGTTATTTATTGTAATTATATATTCTTTTAGTTCAGGGTCTTCTGTATGCATATACAAATGTAACCCTCTCATCTAAGATATAGGGTTTTTATAATTTATTTCCTTTTTTCCATTAGGGTTTCTTCTCTTCCAAGTAGGGCTAAGGTTTAGAGTTTGAGTCATCATATTAGAGTGACCGTTTGTCAACACCGTTCATCTCAAGAGGAGCACTACCATCAAAAGAGTCGAAGCATTGTAGCCGTTCATCAAAAAGGCATGTAGGTTGTTTGAATCTGCTTCTTTCGATTGGGTTTGTTTTGAGATGTGTTTTTCGATCTATCCATGTGATTGGATTCAACAAAATCTCTTGGGTTTGTTGCGAGTTGTGTTTGCATCATGGGTTTAGAAATTTTTACAGTCCAATTTTTTCTCCTCTATTCAGGTTTATCTTCAGTTTGTGTCATTGATCGTTTTGTCTGCCTTAAAAGGATTTGGATGGCAAAAATCACTGAATAGAGATTATATGCTTATGTTTTTCATGAACCAATTGTGGTGGGAAGGGTTTATGGTAATGATCACCAATGTATCCATAGGATAGGGACTGGGATGGGAAAACCTCTGTGATGACCATCTTGCCCTTTTTGTTGAGGATTGAAAGGTAAGTTTCTGTAGCTTCCTTCGGATTTTCTGGCTTTTGTGATGGTTTTTAATGGTAAGCAAGGGCTGTGAGGGTTGATAGGAATAGTTGTGGTTTTTCTTTCTATTCTGAGGTTGAATAGGTTTTGGTTATTGATCAGGTTTTTTGGTGTACGATGGGGGCAATTTTCAATGAGGTTGAGGAAAGTTGTCCATCCTTTTTAGTCTTCACCCACTAGAATAAAAATAACACCATCATTTCCATGAAATGGTCTTCTCTGGTAAACATTTTTCCTTGAACTTTTAGTTTAATGGAGCCAATAGTAGGGTGTACTAAGATGCTGTCAAACATGGAAAGAATCTCATATGATCTCCTATAGTTTTATTCTTGTTTCACTATATCTGTCATTTAGCTCGATTGAATAGGTCTTTCCGCCAATGATGGTCTTGGGTTTTAGAAGTGTAGGAGGTGGTGCCATGGGACTTGGCCTCTGAGATGAGGGGTTCATAACACTTGCTGTATGTGCCATCTGTTTTTCAATGACCACATTCTTTTGGACTTCTAGTGCTGATACCTTAGCCCAAATTCCAGTAATCAACTACTGGATACCCACAACAAAAAATGAAGTTGGTAAATCTTAACACAATCCTTAATCTTCTGCTAGCTATTAGACTCGCCCAATATTCACATCATCAACATTCTTCAATGCTACAAACAAGTTGTCCATTTACACAATCTTTATTCTTCTGTTAGCTATTAGAGTCACTCAATCTTCGCACCATCGACATTCTTCGTGCTTGGGAGGCCGTTGAATGCTATGGGTTGTAGTTAGATAAAGCTAGAGATGTCCATTTATCATGTGGAGCTAGGGCCCTGTGGAGGCCCGTCCCAAATTGGTTGGGGAATCCCCGTTTAAATGGGAAAAGGGGAGAGATTTCTTCCTGTTCGATAAATAGGGCTGGACCTCCCCGCCTCGCCCCTTTGATATACGTACATATATATATATATACATATATATATCCATTACAAATTATAATAAATAAATTTAAAAAACAAATATTTTCTTTGTCTTACAATTACATTTTCATCACTTTACACATTGTCCATTATTTTATTTCAGCCTATTATACTTTATTTTGGCTAATAAGCCCAAAGTTAGTGAAATTGGGGTCACAATGAACTTTGGTGCTTATTATAAATATTTTTATTTATATACTACAATATCTAAGGTTTTGAGACTATGATCGTAATCTTTAAGTTAAAACTATGATGAATTCTTTTTGTGTGGAAGTTTATGCTGTAATACTAAAATTTGATTAGAAATGTTGTTTGTAGAACATATATAAGATTTTTGTTTACATTTTTAATAAAAATTATATCATTAAACGGGAATTATGCATTTCAAAAATTTCTTCACAAAAACCATTTTTTAAAAAAAAAATAAAAATCTGAGATAAAATTTCCTGTGGGAAACTTGATCCCTGCACAATCATGTGGGGATTCCTTGCCTCGATAATCTTTGAAAAAATAAATGGAGAATTTCACCGGGATGTTGAATGAAAAGGGGGTGGGCATGGGGATGGGAAGTCTTCCTTGTTCCCGCCCCTCCTCATGGACATCTCTAGATAAAGTTTCATTACGAGTTTACCGGATATTCAACAAAAAAACAGCTTTGTTCGTTGAGTCTCGTCGTGGCTTGAGTAGATTGTTGGGCGTCTAGTGGAGATCACAAACGTAGAGAGGTTGGGGGTTGTGATGGAAGAATTGTTGACGTGGGACTCTGTTGGTTGGAAGTTGATTATTCCACTGCGGTCGGGGTTATCTTGTGGTCGAGACTAGTTGATGATCTACTCTGTTTCACTTCAGAGGCCACTTGGAGTGTTGGCATAGAGAGAGTGGAGTCAGGAAAACAACTTGAAAAGCTGCTAAGACTTGTCGGAAACTTTGTTCATGTAGATCTCTTTGTCAGTTGGTAGTTGGTTGTCGCACGTTGGTCAATGGTCGGGGTTGTCACGGTGACCTGGGTTTTTGCGTGGTCACATGGAACCCTAGGTTAAAAGTACTTCTGGTTTTCCTAATACTAAGCACATTTCTTTTGTGTCTGATCACATTTTCCATCATGGGAGAAAGGATTCCAAGTATTCGGCTCCTTAGTTGTTACAGGGTTTCTCTTGTAACGTTTTTTTCATTTTCTTTGTTCTCTCCCTTCTTGGGTACCTCTGCGTTTTCCTCTCTTTAGTAGGTTGAAATTCTTAAAAGGTGAAATTCTTGGCTAGCTCTGAAGGGAGAGTGAACACGCAAGATTATCTTGAAAGACGTTCATCATTAGTGTAGAACCAGCAATAGTGTGTTTGTTGGAAGGAGGATGATCTTGACTATTTTATGTGGAATTGTCCTTTTGCTTTTCCCATTTGGAGTCGATTTTTCAGGGCTTTCGCATTTGCTTTAGCAACATGGTTTCTCTTTGATCGGGAAGGTATGATAGAGGAAGAATTTTGTCGCAAGTTTTTTTTTGGCTATTTTGTGGGGCAGGCTGGAGAGGAAAAGGAGTTTTAGAGGATCTGAGAGGTCTGGGGATGAATCATAGGAGTTGGATAGGTTTAGTTCTTCATTATGTTCCTCCATTAATCAAGATTTTTTTTTTTGTAATTACGAGCTTGATTTCATACTTTTACATTGGATTTTTTTCCCTTGTATTTGAGCTGAGGCAGTGTTGGTTGTTGTATGTCTTGTACACTTTTTTCATTCTTCTCCATGAAAGCTTTGTTTCTTATATAAAAATAAATGATCTTTCAAATTTGAATTTGTAAACTGGTATTAGTATATTATCTGGTAAGGCTTCCTTGTAGAGTTACATTATTCTGTCAATTCGAGCATGTAATAGACTTTCATGGCAACTTCACTTGGAATTATCATGAAAAGCTTACATTCAAACAACTGGTTTACAAAAAGTTGAACTTTGATTAGTTGTTGTTTTTAAAGAGTATTATTATATTAATTTTAGTCCGATCAGAAGTTCAGATAAAGTTTTATTACAAAAAGTGCTCTCCCCCGTTTCTGGTTCCTGCTAGAAAAAATGTGGAATGATTGTGTTCGAGTATTACTGGGTATTTGGGATATTGGTGTTCGTTACGTAATGACAGTTAATTTCTCGTTAGATTGTTAGGTGAGTTGGTTAGGAGTCGGGAGTGTAGAGGACGGATATTATTGCTGATTGTATCAATTTGTTACCATTTGGCTCACGTAACCGAGTTCTTAGCAGATTGTAGAGAATAATTAAAGAATAATTGTTGTGTGGCTGGTATGCTTTTTTAGGACTGTTCAAAGATGGGCATCTTTATCAAAAGTGTCAAGTTTATGCAATCCTATATTTCACCTAAATCTTTGAATTATATTTGAGGAATAATGTGAAACATTTTGTCCTCCTTGAAATCAGGATATCCAAGTAACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTATTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTTGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATGCTTGAGGTAAATGTCGCAGTGAGCTGCCAATCTAACTATTTTCCATTTTTCCCATACAATGTTGTAGAAACGTAGGTTGATGGGGAAACTTGAGTCATGTATGTATATGATCTAGGTAGAGCTAATAGCATCCACTTATGACTAGTCGGCTCATACCAAAATCCTGCTGTATTCTTAGTACATCTCTTATATTATCCTATTATTATTTGAGTTTTTTAATATCAATTTTGAGAACGTGACAAATCCTAATCCAGGCAGATCCTCTATCTTAAGGGGGATAGCTAAACTATCCATTGTTTTCCTTTTAATCTGTGGTCTTTTCTATATTTGATATATAGGTCATGTCTTGTTGGCTGTATTCATTTTCTTTCATTTGTTTGCATCAAGAAGTTGTCGAACTATGAAATCTCATATCGGTTGGGAAGGAGTACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTACCTAGCATACATGTTTTAAAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGTTGGTGGTGGGTTTGGACTGTTATAAATGGTGTCAGAGCTAGACATCGAGCGATGTGCCAATGAGGAGGTTGAGCACCAAAGGGGGGTGGACAAGAGGCGGTGTGCCAGCAAGGACGTTGGGCCTTAAAATGGGGTGGATTGGTGGGTCCCACATCGATTGGAGAAGGGAACAAGTGCCAGCAAAGACGCTGGCCCCCGAATGGGGGGTAGATTGTGAAATCCCATATCGATTGGGGAGGAGAACGAAACCTTCTTTGTATGGGTGTGGAAACCTCTCTTTAGCAAACACGTTTTAAAACTTTGAGGGGGAAGCCCCAAAGGAAAAGTCCAAAGAAGACAATATCTGCTAGCGGTAAGTTTAGTTGTTACACAACCGAAGTGAAGTATTCATGATTGAATTTTAATGTTTTGAAGTAGAAACTGCCTGCACAGGGATAGTAGAGAAAAGCTACCAGTTTGGCAGAAAACAGTTTCTCCTTTTCATTTGGTTAGACTGTTTTATCTGTTTTATGTGTTCTTGAGCCAAACTAGGAGTTGATTCTTCCAAGGTTTCCCTTTCTATGCGTCTTATTATTATTATTTGAAGTATTGCTTCTCTTACCTAAAAGTGTGAGAACATTCTATACCATGTGCCTACGTTTTAGGATGTGAAAAGTTGGACCCATTGGCTTGGGACTTCCTTTTGAGAGAATATTAGCAACACACTGTATATGCGTACACTTTGTCTGGATGAATTCTTTTTTTGTAGGCAGGCCTTATCTTTGTCACATAATATATAGATCTCTCGTGTCGTGACTTTAATGACTAGCTTCATCGACCTATGGGGATAAGATTATCGACATCCTTAGGAGCATTCTACAACTTGTAGTATCTAA

mRNA sequence

AACCCTTTTCCATCTTCCTCTCTCACTCACTCTCACGTGTCTCACCTTCTTTTTCTTCTTCTTCCCGGCCGTCTCCTCCGTTTCAGCATCCCAGTGCCGTCGCCGCTTCTCTTCCGATCAGTGTTGCCGCCGCATCCTCACTCCTTGTTTTTACTGATCAGTTAGTTTAAAATTCTTAATTGCTGTGAGATTTGTTACAGCCAGGATAGCTCTTGATGGATCCACTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTAACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTATTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTTGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATGCTTGAGGCAGGCCTTATCTTTGTCACATAATATATAGATCTCTCGTGTCGTGACTTTAATGACTAGCTTCATCGACCTATGGGGATAAGATTATCGACATCCTTAGGAGCATTCTACAACTTGTAGTATCTAA

Coding sequence (CDS)

ATGGATCCACTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTAACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTATTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTTGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATGCTTGA

Protein sequence

MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA

Homology

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BLAST of CmaCh13G003220 vs. Swiss-Prot
Match: MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-45
Identity = 84/111 (75.68%), Postives = 101/111 (90.99%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++ +L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

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BLAST of CmaCh13G003220 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.8e-53
Identity = 109/140 (77.86%), Postives = 113/140 (80.71%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMI 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]

BLAST of CmaCh13G003220 vs. TrEMBL
Match: W9R6A2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026253 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.4e-50
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD  TQNTSLQRLQNVEKRIVRVLELAGGVM+EL+NPAGPRKEFVNNHC EFMQ IKDIQ
Sbjct: 1   MDSQTQNTSLQRLQNVEKRIVRVLELAGGVMDELSNPAGPRKEFVNNHCREFMQLIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEY 112
           V+LR+EIKSAC+YRPFEKCDYSSRI NE+CCKKLEY+I +LDGMKQTIDEY
Sbjct: 61  VSLREEIKSACDYRPFEKCDYSSRIANEICCKKLEYVISQLDGMKQTIDEY 111

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BLAST of CmaCh13G003220 vs. TrEMBL
Match: A0A061GG64_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_030340 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 7.0e-50
Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD  TQNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI NE+CCKKLEY++ +LD MKQTIDEYQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]

BLAST of CmaCh13G003220 vs. TrEMBL
Match: A0A0D2R9Y6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185800 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-49
Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD  TQNTSL+RLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLRRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI NE+CCKKLEY++ +LD MKQTIDEYQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLFQLDAMKQTIDEYQ 112

[Close]

BLAST of CmaCh13G003220 vs. TrEMBL
Match: A0A0B0N6V2_GOSAR (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=F383_14611 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-49
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD  TQNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI NE+CCKKLEY+  +LD MKQTIDEYQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQ 112

[Close]

BLAST of CmaCh13G003220 vs. TAIR10
Match: AT3G01435.1 (AT3G01435.1 Expressed protein)

HSP 1 Score: 183.7 bits (465), Expect = 6.5e-47
Identity = 84/111 (75.68%), Postives = 101/111 (90.99%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++ +L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]

BLAST of CmaCh13G003220 vs. NCBI nr
Match: gi|659082827|ref|XP_008442051.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-57
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI KLDGMKQTID+YQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]

BLAST of CmaCh13G003220 vs. NCBI nr
Match: gi|449453808|ref|XP_004144648.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 109/118 (92.37%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 119
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYM+ KLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 118

[Close]

BLAST of CmaCh13G003220 vs. NCBI nr
Match: gi|700199753|gb|KGN54911.1| (hypothetical protein Csa_4G594450 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 109/140 (77.86%), Postives = 113/140 (80.71%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMI 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]

BLAST of CmaCh13G003220 vs. NCBI nr
Match: gi|703104896|ref|XP_010098119.1| (hypothetical protein L484_026253 [Morus notabilis])

HSP 1 Score: 204.9 bits (520), Expect = 7.7e-50
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD  TQNTSLQRLQNVEKRIVRVLELAGGVM+EL+NPAGPRKEFVNNHC EFMQ IKDIQ
Sbjct: 1   MDSQTQNTSLQRLQNVEKRIVRVLELAGGVMDELSNPAGPRKEFVNNHCREFMQLIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEY 112
           V+LR+EIKSAC+YRPFEKCDYSSRI NE+CCKKLEY+I +LDGMKQTIDEY
Sbjct: 61  VSLREEIKSACDYRPFEKCDYSSRIANEICCKKLEYVISQLDGMKQTIDEY 111

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BLAST of CmaCh13G003220 vs. NCBI nr
Match: gi|590626684|ref|XP_007026238.1| (Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao])

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-49
Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD  TQNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI NE+CCKKLEY++ +LD MKQTIDEYQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

The following BLAST results are available for this feature:

BLAST of CmaCh13G003220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED11_ARATH	1.1e-45	75.68	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana G...	[more]

BLAST of CmaCh13G003220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L450_CUCSA	8.8e-53	77.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1	[more]
W9R6A2_9ROSA	5.4e-50	87.39	Uncharacterized protein OS=Morus notabilis GN=L484_026253 PE=4 SV=1	[more]
A0A061GG64_THECC	7.0e-50	86.61	Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM...	[more]
A0A0D2R9Y6_GOSRA	1.2e-49	85.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185800 PE=4 SV=1	[more]
A0A0B0N6V2_GOSAR	1.2e-49	86.61	Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=...	[more]

BLAST of CmaCh13G003220 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01435.1	6.5e-47	75.68	Expressed protein	[more]

BLAST of CmaCh13G003220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082827\|ref\|XP_008442051.1\|	1.3e-57	94.92	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]	[more]
gi\|449453808\|ref\|XP_004144648.1\|	1.9e-56	92.37	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ...	[more]
gi\|700199753\|gb\|KGN54911.1\|	1.3e-52	77.86	hypothetical protein Csa_4G594450 [Cucumis sativus]	[more]
gi\|703104896\|ref\|XP_010098119.1\|	7.7e-50	87.39	hypothetical protein L484_026253 [Morus notabilis]	[more]
gi\|590626684\|ref\|XP_007026238.1\|	1.0e-49	86.61	Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019404	Mediator_Med11

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G003220.1	CmaCh13G003220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019404	Mediator complex, subunit Med11	PFAM	PF10280	Med11	coord: 8..90 score: 2.0
None	No IPR available	unknown	Coil	Coil	coord: 101..118 scor
None	No IPR available	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 1..117 score: 2.2
None	No IPR available	PANTHER	PTHR22890:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11	coord: 1..117 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G003220	Cla011008	Watermelon (97103) v1	cmawmB202
CmaCh13G003220	ClCG01G011300	Watermelon (Charleston Gray)	cmawcgB180
CmaCh13G003220	CmoCh13G003380	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G003220	Lsi02G011700	Bottle gourd (USVL1VR-Ls)	cmalsiB204
CmaCh13G003220	Cla97C01G010970	Watermelon (97103) v2	cmawmbB208
CmaCh13G003220	Carg24385	Silver-seed gourd	carcmaB0056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G003220	Silver-seed gourd	carcmaB0695
CmaCh13G003220	Cucumber (Chinese Long) v3	cmacucB0246
CmaCh13G003220	Cucumber (Chinese Long) v3	cmacucB0253
CmaCh13G003220	Wax gourd	cmawgoB0280
CmaCh13G003220	Wax gourd	cmawgoB0264
CmaCh13G003220	Cucurbita maxima (Rimu)	cmacmaB211
CmaCh13G003220	Cucumber (Gy14) v1	cgycmaB0883
CmaCh13G003220	Cucurbita moschata (Rifu)	cmacmoB220
CmaCh13G003220	Wild cucumber (PI 183967)	cmacpiB215
CmaCh13G003220	Wild cucumber (PI 183967)	cmacpiB222
CmaCh13G003220	Cucumber (Chinese Long) v2	cmacuB212
CmaCh13G003220	Cucumber (Chinese Long) v2	cmacuB222
CmaCh13G003220	Melon (DHL92) v3.5.1	cmameB203
CmaCh13G003220	Melon (DHL92) v3.5.1	cmameB204
CmaCh13G003220	Watermelon (Charleston Gray)	cmawcgB183
CmaCh13G003220	Cucurbita pepo (Zucchini)	cmacpeB220
CmaCh13G003220	Cucurbita pepo (Zucchini)	cmacpeB236
CmaCh13G003220	Cucumber (Gy14) v2	cgybcmaB071
CmaCh13G003220	Cucumber (Gy14) v2	cgybcmaB078
CmaCh13G003220	Melon (DHL92) v3.6.1	cmamedB223