Carg24385 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24385
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit 11
Location	Cucurbita_argyrosperma_scaffold_214 : 118183 .. 119033 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGCTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGGTTGGACTAACTTTCTATACCCTAAATTTTTTGTTTCTAGTTCTTTGCATGGTCTTTAATTGTACCACAAGATTTCTTACGGCCAATTTTTGTGTTCCATTCCTGCAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTGAGTCTTCTCTGTTTGACCGTGGTTCTTCACGTCAAATGTTGTTTCAAATTTAGCTAGGTTTATCGCCTCACATTGGGCGTCTGTGTTTAACAACTTTTGTAATTATTTGTTGGTTTTATTCTTAAACTCTTTTCTTCCTCAATTTTAGCTAGGTTAGGGCCTGTTGGGTTCCTTTTGGGGCGTCAATTTTGTAGGTCTAGTGTTTGTGTTGCAGTTGTTTATTTATTTATTATTTTGATTTGACCCTTCTGTCTTCTTTTGTTTCTTTTTCCTCCATGAAAGTTGGGTTCCTTTTGTACAATTTGGCAATTGATTTCTTATTTGAATGTTTGGTTATTCGATCAAATGATTCTCAAGTTTAGTTTAAGGGTTCTAGTCCGTAGACTGCCATTGCTTCATGTTTTCCTTTTATCTTCTCAAATTTTAATTGTTTGATGGGCGAAGGCGCTAACTATTATATTTTGGAGGATACTTGGGTGGAGATGAAACCCTTTGTGCTCTATTCCCACAACTCTATCACTTTTCAGATAGAGGATCCATTTGATAGCCTCTGGCTTGCCCTCTTTTGA

mRNA sequence

ATGGATCCGCTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGATAGAGGATCCATTTGATAGCCTCTGGCTTGCCCTCTTTTGA

Coding sequence (CDS)

ATGGATCCGCTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGATAGAGGATCCATTTGATAGCCTCTGGCTTGCCCTCTTTTGA

Protein sequence

MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKIEDPFDSLWLALF

Homology

[Close]

BLAST of Carg24385 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Carg24385 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Carg24385 vs. NCBI nr
Match: XP_022973172.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima] >XP_022973173.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Carg24385 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Carg24385 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-22
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Carg24385 vs. TAIR10
Match: AT3G01435.1 (Expressed protein)

HSP 1 Score: 99.8 bits (247), Expect = 7.3e-22
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +K
Sbjct: 1  MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMK 57

[Close]

BLAST of Carg24385 vs. Swiss-Prot
Match: sp|Q6ID77|MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-20
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +K
Sbjct: 1  MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMK 57

[Close]

BLAST of Carg24385 vs. TrEMBL
Match: tr|A0A1S3B5G7|A0A1S3B5G7_CUCME (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-22
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Carg24385 vs. TrEMBL
Match: tr|A0A0A0L450|A0A0A0L450_CUCSA (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.8e-22
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Sbjct: 1  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 57

[Close]

BLAST of Carg24385 vs. TrEMBL
Match: tr|W9R6A2|W9R6A2_9ROSA (Mediator of RNA polymerase II transcription subunit 11 OS=Morus notabilis OX=981085 GN=MED11 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD  TQNTSLQRLQNVEKRIVRVLELAGGVM+EL+NPAGPRKEFVNNHC EFMQ IK
Sbjct: 1  MDSQTQNTSLQRLQNVEKRIVRVLELAGGVMDELSNPAGPRKEFVNNHCREFMQLIK 57

[Close]

BLAST of Carg24385 vs. TrEMBL
Match: tr|A0A2I0IZE9|A0A2I0IZE9_PUNGR (Mediator of RNA polymerase II transcription subunit 11 OS=Punica granatum OX=22663 GN=MED11 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD  TQNTSLQRLQNVEKRIV+VLELAGGVM+ELANPAGPRKEFVNNHC EFMQ IK
Sbjct: 1  MDSQTQNTSLQRLQNVEKRIVKVLELAGGVMDELANPAGPRKEFVNNHCREFMQLIK 57

[Close]

BLAST of Carg24385 vs. TrEMBL
Match: tr|M1C635|M1C635_SOLTU (Mediator of RNA polymerase II transcription subunit 11 OS=Solanum tuberosum OX=4113 GN=102599143 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.3e-20
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK 58
          MD  +QNTSLQRLQNVEKRIVRVLELAGGVM+E+ANP+GPRKEF+NNHCSEFMQ IK
Sbjct: 1  MDSQSQNTSLQRLQNVEKRIVRVLELAGGVMDEMANPSGPRKEFINNHCSEFMQLIK 57

The following BLAST results are available for this feature:

BLAST of Carg24385 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142440.1	1.4e-23	100.00	mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP...	[more]
XP_022927640.1	1.4e-23	100.00	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos...	[more]
XP_022973172.1	1.4e-23	100.00	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita max...	[more]
XP_023520392.1	1.4e-23	100.00	mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep...	[more]
XP_008442051.1	3.5e-22	96.49	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]...	[more]

BLAST of Carg24385 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01435.1	7.3e-22	80.70	Expressed protein	[more]

BLAST of Carg24385 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6ID77\|MED11_ARATH	1.3e-20	80.70	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg24385 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5G7\|A0A1S3B5G7_CUCME	2.3e-22	96.49	Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A0A0L450\|A0A0A0L450_CUCSA	8.8e-22	94.74	Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365...	[more]
tr\|W9R6A2\|W9R6A2_9ROSA	3.7e-20	89.47	Mediator of RNA polymerase II transcription subunit 11 OS=Morus notabilis OX=981...	[more]
tr\|A0A2I0IZE9\|A0A2I0IZE9_PUNGR	3.7e-20	89.47	Mediator of RNA polymerase II transcription subunit 11 OS=Punica granatum OX=226...	[more]
tr\|M1C635\|M1C635_SOLTU	6.3e-20	85.96	Mediator of RNA polymerase II transcription subunit 11 OS=Solanum tuberosum OX=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR019404	Mediator_Med11

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24385-RA	Carg24385-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019404	Mediator complex, subunit Med11	PFAM	PF10280	Med11	coord: 8..56 e-value: 2.8E-7 score: 31.0
IPR019404	Mediator complex, subunit Med11	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 1..57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24385	Cla011008	Watermelon (97103) v1	carwmB0051
Carg24385	ClCG01G011300	Watermelon (Charleston Gray)	carwcgB0052
Carg24385	CmaCh13G003220	Cucurbita maxima (Rimu)	carcmaB0056
Carg24385	Lsi02G011700	Bottle gourd (USVL1VR-Ls)	carlsiB045
Carg24385	Cla97C01G010970	Watermelon (97103) v2	carwmbB0048

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24385	Silver-seed gourd	carcarB054
Carg24385	Cucumber (Gy14) v2	carcgybB0049
Carg24385	Cucurbita maxima (Rimu)	carcmaB0057
Carg24385	Cucurbita moschata (Rifu)	carcmoB0059
Carg24385	Cucurbita moschata (Rifu)	carcmoB0060
Carg24385	Cucurbita pepo (Zucchini)	carcpeB0062
Carg24385	Cucurbita pepo (Zucchini)	carcpeB0064
Carg24385	Wild cucumber (PI 183967)	carcpiB0053
Carg24385	Cucumber (Chinese Long) v2	carcuB0049
Carg24385	Cucumber (Chinese Long) v3	carcucB0054
Carg24385	Melon (DHL92) v3.5.1	carmeB0047
Carg24385	Melon (DHL92) v3.6.1	carmedB0049
Carg24385	Wax gourd	carwgoB0055