CmoCh13G003380 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mediator of RNA polymerase II transcription subunit 11
Location	Cmo_Chr13 : 4345698 .. 4348234 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATGATTGTGTTCAGTATCACTGGGTATTCGGGATTTTGGTGGTCGTTACGTAATGACAGTTAATTTCTCGTTAGATTGTTAGTTGAGTCGGTTAGGAGTCGGGAGTGTCGAGGAAGGATATTATTGCTGATTGATATCTCAATTTGTTACCATTTGGCTCACGTAACCGGGTTCCTAGCAGATTGTAGAGAATAATTAAAGAATAATTGTTGTGTGGCTGGTATGCTTTTTTAGTACTGTTCAAAGATGGGGCATCTTTATCAAAAGTGTCAAGTCAATGCAATCCTATATTTCACCTAAATCTTTGAATTATATTTGAGGAATAATGTGAAACATTTTGTCCTCCTTGAAATCAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGAGGTAAATGTCGCAGTGAGCTGCCAATCTAACTATTTTCCATTTTTCCCATACAATGTTGTAGAAACGTAGGTTGATGGGGGAAACTAGGTAGAGCTAATAGCATCCACTTATGACTAGTCGGCTCATACCAAAATCCTGCTGTATTCTTAAACTATCCATTGTTTTCCTTTTAATCTGTGGTCTCTTCTATATTTGATATAGGTCATGTCTTATTGGATGTATTCATTTTCTTTCATTTGTTTGCATCGAGGAGTTGCCGGCTGAGCTACGAAATCTCACATCGGTTGGGGAGGAGTACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTACCTAGCATACACGTTTTAAAAACCTTGTGGGGAAGCCTGAAAGGGAAATCCCAAAGAGGACAATATCGGTTGGTGGTGGGTTTGGACTATTATAAATGGTGTCAGAGCTAGACACCGGGCGATGTGCCAACAAGGAGGCTGAGCACCAAAGGGGGTGGACAAGAGGCGGTGTGCTAGCAAGGACGTTGGGCCTTGAAAGGGGGTGGATTGGTGAGTCCCACATCGATTGGAGAAGGGAACAAATGCCAGCAAAGACGCGGGGCCCTGAAGGAGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGTGGATTGTGAAATCCCACATCGATTGGGGAGGAGAACGAAACATTTTTTACAAGAGTGTGGAAACCTCTCTCGAGCAGACACGTTTTAAAACCTTGAGGGGGAAGCCCAAAAAAGAAAGTCTATAGAAGACAATATTTGCTAGCGGTAGGTTTAGGTCGTTACACGAATAAAGTCAAGTATTCAGAATTGAATTTTAATGTTCGAATGATTGAAGTAGAAACGCCTGCAGGGATTCTTAGACTGCTTTATCTGTTTTATGTGTTCTTGAGAGAATATTAGCAACACACTGTATATGCATACACTTTGTCTGGAGGAATTCTTTTTTTTTTTGTAGGCAGGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACGAGCTTCATCGACCTATGAGGATAAGATTATCGACATCCTTAGGAGCATTCTGCAACTTGTAGTATCTAAGCATCCATTTCTAGTTCTTGTTTTTTTCTCGTTATTTGATGAATGTCATTACTGTCTATTATCTGAAAATACTTTCCTTCGAAGTTACACGAATAGATGTAACGATATTTGTCACTTGTCACATATGGTTGTAGTATCTCATTCTCATCATAAATCAAATGATCATTTGTAACTATTTAGAAGCACCCACACAAAAAATTGAGTCACAGTCGTTATTTTTTTGACATTGTTGTGAGGAATGTTCAAATTTGACGATTTTGACATCTACGATCGATGTCCATCACCCAAAAATGATTTTTGCTCCTGACCAGTTTATGTTCGACTAACATCGGG

mRNA sequence

ATGTGGAATGATTGTGTTCAGTATCACTGGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGAGGCAGGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACGAGCTTCATCGACCTATGAGGATAAGATTATCGACATCCTTAGGAGCATTCTGCAACTTGTAGTATCTAAGCATCCATTTCTAGTTCTTGTTTTTTTCTCGTTATTTGATGAATGTCATTACTGTCTATTATCTGAAAATACTTTCCTTCGAAGTTACACGAATAGATGTAACGATATTTGTCACTTGTCACATATGGTTGTAGTATCTCATTCTCATCATAAATCAAATGATCATTTGTAACTATTTAGAAGCACCCACACAAAAAATTGAGTCACAGTCGTTATTTTTTTGACATTGTTGTGAGGAATGTTCAAATTTGACGATTTTGACATCTACGATCGATGTCCATCACCCAAAAATGATTTTTGCTCCTGACCAGTTTATGTTCGACTAACATCGGG

Coding sequence (CDS)

ATGTGGAATGATTGTGTTCAGTATCACTGGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

Homology

[Close]

BLAST of CmoCh13G003380 vs. Swiss-Prot
Match: MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-17
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 65
           DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 58  DIQVTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]

BLAST of CmoCh13G003380 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.0e-27
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 2   WNDCVQYH---WDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMK 61
           W   +++H    DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMK
Sbjct: 68  WRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMK 127

Query: 62  QTIDEYQVKMEDS 72
           QTID+YQVK+EDS
Sbjct: 128 QTIDDYQVKIEDS 140

[Close]

BLAST of CmoCh13G003380 vs. TrEMBL
Match: A0A061GG64_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_030340 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-21
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 66
           DIQVTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]

BLAST of CmoCh13G003380 vs. TrEMBL
Match: A0A0B0N6V2_GOSAR (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=F383_14611 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-21
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 66
           DIQVTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQ 112

[Close]

BLAST of CmoCh13G003380 vs. TrEMBL
Match: A0A0D2R9Y6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185800 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.1e-21
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 66
           DIQVTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++ +LD MKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLFQLDAMKQTIDEYQ 112

[Close]

BLAST of CmoCh13G003380 vs. TrEMBL
Match: A0A0D2UGY0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185800 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.1e-21
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 11 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 66
          DIQVTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++ +LD MKQTIDEYQ
Sbjct: 28 DIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLFQLDAMKQTIDEYQ 82

[Close]

BLAST of CmoCh13G003380 vs. TAIR10
Match: AT3G01435.1 (AT3G01435.1 Expressed protein)

HSP 1 Score: 89.7 bits (221), Expect = 7.6e-19
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 65
           DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 58  DIQVTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: gi|659082827|ref|XP_008442051.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           +YQVKMEDS
Sbjct: 110 DYQVKMEDS 118

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: gi|700199753|gb|KGN54911.1| (hypothetical protein Csa_4G594450 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-27
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 2   WNDCVQYH---WDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMK 61
           W   +++H    DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMK
Sbjct: 68  WRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMK 127

Query: 62  QTIDEYQVKMEDS 72
           QTID+YQVK+EDS
Sbjct: 128 QTIDDYQVKIEDS 140

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: gi|449453808|ref|XP_004144648.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-27
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 3   NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 62
           ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID
Sbjct: 50  SEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTID 109

Query: 63  EYQVKMEDS 72
           +YQVK+EDS
Sbjct: 110 DYQVKIEDS 118

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: gi|590626684|ref|XP_007026238.1| (Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 66
           DIQVTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]

BLAST of CmoCh13G003380 vs. NCBI nr
Match: gi|728830775|gb|KHG10218.1| (Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum])

HSP 1 Score: 108.6 bits (270), Expect = 4.5e-21
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 11  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 66
           DIQVTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQ 112

The following BLAST results are available for this feature:

BLAST of CmoCh13G003380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED11_ARATH	1.4e-17	70.37	Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana G...	[more]

BLAST of CmoCh13G003380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L450_CUCSA	5.0e-27	82.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1	[more]
A0A061GG64_THECC	1.8e-21	89.09	Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM...	[more]
A0A0B0N6V2_GOSAR	3.1e-21	89.09	Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=...	[more]
A0A0D2R9Y6_GOSRA	9.1e-21	87.27	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185800 PE=4 SV=1	[more]
A0A0D2UGY0_GOSRA	9.1e-21	87.27	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185800 PE=4 SV=1	[more]

BLAST of CmoCh13G003380 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01435.1	7.6e-19	70.37	Expressed protein	[more]

BLAST of CmoCh13G003380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082827\|ref\|XP_008442051.1\|	2.5e-27	88.41	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]	[more]
gi\|700199753\|gb\|KGN54911.1\|	7.2e-27	82.19	hypothetical protein Csa_4G594450 [Cucumis sativus]	[more]
gi\|449453808\|ref\|XP_004144648.1\|	9.4e-27	85.51	PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ...	[more]
gi\|590626684\|ref\|XP_007026238.1\|	2.6e-21	89.09	Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao]	[more]
gi\|728830775\|gb\|KHG10218.1\|	4.5e-21	89.09	Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003380.1	CmoCh13G003380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22890	UNCHARACTERIZED	coord: 11..70 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G003380	CmaCh13G003220	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003380	ClCG01G011300	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003380	Lsi02G011700	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003380	Cla97C01G010970	Watermelon (97103) v2	cmowmbB192
CmoCh13G003380	Carg24386	Silver-seed gourd	carcmoB0059

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003380	Silver-seed gourd	carcmoB0675
CmoCh13G003380	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003380	Wax gourd	cmowgoB0270
CmoCh13G003380	Wax gourd	cmowgoB0257
CmoCh13G003380	Cucurbita moschata (Rifu)	cmocmoB167
CmoCh13G003380	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003380	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003380	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003380	Cucumber (Chinese Long) v2	cmocuB199
CmoCh13G003380	Cucumber (Chinese Long) v2	cmocuB206
CmoCh13G003380	Melon (DHL92) v3.5.1	cmomeB189
CmoCh13G003380	Watermelon (97103) v1	cmowmB189
CmoCh13G003380	Cucurbita pepo (Zucchini)	cmocpeB189
CmoCh13G003380	Cucurbita pepo (Zucchini)	cmocpeB204
CmoCh13G003380	Cucumber (Gy14) v2	cgybcmoB072