CmaCh12G001390 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G001390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	GrpE protein homolog
Location	Cma_Chr12 : 606135 .. 609212 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGTCGGGTCGGGTCGGAATTCGGGCCTAGGGCTCAACTAAAACGAAATGTCCAGAAACTCAGAGAAGGAAGAAGAAGACGAAGGCTAAGAACTGGAGGCATTCCTTCACTGAGTTTGAGCTTCATCTTCTCTTCGTAATTTGTGTCAATGGCGGCTTTGGCTCTCTCTAATTACACTCTCTTCTCTCCTCGCGCTTCTACTTCCTCCAGAGCCATAGAATCCACGTCCCTTGTTACACCGTCTCTTTGTTTTCTTCATAATCCTCGCCATCGCTCTCGTCTTTCTTACCCATTATTAAGTTTCTCTCCAGCCTCCCATTCTTTTCCGGTTAGACGTTCATTCTTACCGTGTTTTTCTGCTCAAGATTCTGTTCCCAATGTACGTTGAACTCTCCTTTTATTGGTTGCTTTGATTGCTTACAGTTCTTGTTGTTATCGTTTTTCGAAATTCTGCGTACTTTTATTTCTCTGTCGTGTTGTTATTTTAGTCTTTTGCGTGTGGTGTTTTGCTGGATTTGAGTTGCGATTGTTTGAGATGGAAATGTTCGCTTATACTGCGTGTTTATTGTACGGGCTCTTTAAATGCATTTTTGGAACTTCGAATTCCTATTTTCTCAGTGCTGGATGGTGATCTTTGCTGCTATGGCCAACCCATAGTGACACTGATTAGATTACTGAATTTTGAGGTGAAAGAGTTCTTCATTTTCTAGATAGAAAAGACTGGTGGTTTTGATAAGCTGGTGGTTTAAGTCGATTTTTGTGTCAAAATTTGGCATTCCTTAAATGGAAGGTTTGGTTGCCATCCAAAAAAAACTCAAACACCTTCTGTAACGGCACTAGCCCACCACTAGCAAATAATGTTCTGTTTCGTTCTGCTCTCCAACCGATGTGTGATCTCACAATCCACCCCTCAGCGTCCTTGCTGGCACATTGTCTTGTGTCCACCCCCCTTGGAGGCTCAGCCTTCTCGCTGGCACATTGCTCGTGTCTAGCTCTGATACCATTTGTGATGATCTAGGCCCACCGCTAGCAGATATTGTCCTCTTTGGGGTTTTCCTTTCTTGCTTTCCTTCAAGGTTTTTAAACCGTGTCTGCTAGGGAAAGGTTCCCACACCCTTATAATGAATGCTTCGTTCTCCTCCAAACCGACGTGGGATCTCACTCCTACATTCCTGAATTATATTATGTCTGAACTAATAACACATATCTGCACTTTCTTTAGAGTAAGGATTCCATTTTCTTTTTTCTTGTACTTTGTAAGTGAAATAAGTGTGCAAGTATAGCTTACTCTAGTTGTTTGAAAATATTTATCTCAACTCAAGAAAGTAAGGGAGAAATGAAATAGAAAGCATCTGTGGAAGTTTTTGGAGGATTCTCATTAAGTTCTTCCCTTTATGGTATGCATACTCTTCATTTTCTTGCTAGGCTTAAAAGTTATAAGTAGCATCTCAATGGTTGAAGGGATTTAGCACACTAATCTACTTGAATCCCTTTTGCTTATATGATTTGTTATTTTACAACTTACTCAGAGATCTGTTTTAGATGTTCAATTCATTGCAGGATGATGAAGTTAGTTACTATTTTTTTTTAATTCGCTTACTCGATGTTGTTGGTTGTCCCTCCCATGAAAAAAGGTAAATACAGAAGAGGATGATGGAAAATATGAGAATAAGGCAGGAGATGAGCTTCATGGATTGAGTTTACAGGCCCTCATCAACGTATACCGTGAAGCGTTTCTTGATGGAAATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAAATTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTGTCGGATACGTCGGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAAACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAGTCTATTACCAATGATCGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGTTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCTGTAGGAAGGCCATTTGATCCCTCAGTAAGTCAAAATCTTGTCTAAAATTTGATACCTTCATTTCAATCTACAAAAGTGTCTGTTTGATTGTTGCTTGTTCTTCATGCTTGCTAGTTTTTCTTACTGTTACTAGGAAGATTAGAACATAAAACGTATTTATTTTCTCATTCTTTATACTTGGGTGGGCGTTCTTTGCAAGTAATTCATGTCGAGTATATCGATAATTGGAATTTAATTTGTCTGATGAGTAGCAAGTGTTGAGTATTGTTGGGAGAAGAGTCTCACGTCCGCTAATTAAGGGATTAATCATGAGTTTATGAGTAAGGAATGCATCTCCATTGGTACGAGATCTTTTGGAGAAACCAAAAGCAAAACCATGAGAATTTTACTTTCAAAGTGGACAATTTCTTACCATTGTGGAGGTTTATGGTTCCTAATAATAAGAGATGACTATCTTTTTACAAATGATGGTAAAATATTTCTTTGGTTGCAGTTACATGAAGCTGTAGCTCGAGAGGAGTCGCAGGAGATCAAGGAAGGGATCATCATTCAAGAATTACGACGCGGGTTTCTTCTCGGAGAACGTCTTCTAAGACCAGCAAGAGTAAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCTGAGAAACCGACCGATCAACCTGCAACTGCTACTGCTAGAGTAGACGAACACTAATTATGCAACGCCGTTTTTCAGGTTGATATAAAAGCATTGGATTTGTTGTCGTAATGCAAGCACCATGTTGTAAATGTATCTCCTAAAACTTCCCATTTCAACTAGGCTTTTGATTCATACCATTTTATGGAGGGCATTGGAAGAACTCACTCTCCATTTCACTTCTGTTTTATACACGTGATAAAGGGCACAATTGGGTTAAAGATTTCATTTATGCAAGCTTTTTGAGATGGCCAAATAGATGCAGATTTGAAGAA

mRNA sequence

CGGGTCGGGTCGGGTCGGAATTCGGGCCTAGGGCTCAACTAAAACGAAATGTCCAGAAACTCAGAGAAGGAAGAAGAAGACGAAGGCTAAGAACTGGAGGCATTCCTTCACTGAGTTTGAGCTTCATCTTCTCTTCGTAATTTGTGTCAATGGCGGCTTTGGCTCTCTCTAATTACACTCTCTTCTCTCCTCGCGCTTCTACTTCCTCCAGAGCCATAGAATCCACGTCCCTTGTTACACCGTCTCTTTGTTTTCTTCATAATCCTCGCCATCGCTCTCGTCTTTCTTACCCATTATTAAGTTTCTCTCCAGCCTCCCATTCTTTTCCGGTTAGACGTTCATTCTTACCGTGTTTTTCTGCTCAAGATTCTGTTCCCAATGTAAATACAGAAGAGGATGATGGAAAATATGAGAATAAGGCAGGAGATGAGCTTCATGGATTGAGTTTACAGGCCCTCATCAACGTATACCGTGAAGCGTTTCTTGATGGAAATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAAATTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTGTCGGATACGTCGGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAAACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAGTCTATTACCAATGATCGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGTTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCTGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCTCGAGAGGAGTCGCAGGAGATCAAGGAAGGGATCATCATTCAAGAATTACGACGCGGGTTTCTTCTCGGAGAACGTCTTCTAAGACCAGCAAGAGTAAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCTGAGAAACCGACCGATCAACCTGCAACTGCTACTGCTAGAGTAGACGAACACTAATTATGCAACGCCGTTTTTCAGGTTGATATAAAAGCATTGGATTTGTTGTCGTAATGCAAGCACCATGTTGTAAATGTATCTCCTAAAACTTCCCATTTCAACTAGGCTTTTGATTCATACCATTTTATGGAGGGCATTGGAAGAACTCACTCTCCATTTCACTTCTGTTTTATACACGTGATAAAGGGCACAATTGGGTTAAAGATTTCATTTATGCAAGCTTTTTGAGATGGCCAAATAGATGCAGATTTGAAGAA

Coding sequence (CDS)

ATGGCGGCTTTGGCTCTCTCTAATTACACTCTCTTCTCTCCTCGCGCTTCTACTTCCTCCAGAGCCATAGAATCCACGTCCCTTGTTACACCGTCTCTTTGTTTTCTTCATAATCCTCGCCATCGCTCTCGTCTTTCTTACCCATTATTAAGTTTCTCTCCAGCCTCCCATTCTTTTCCGGTTAGACGTTCATTCTTACCGTGTTTTTCTGCTCAAGATTCTGTTCCCAATGTAAATACAGAAGAGGATGATGGAAAATATGAGAATAAGGCAGGAGATGAGCTTCATGGATTGAGTTTACAGGCCCTCATCAACGTATACCGTGAAGCGTTTCTTGATGGAAATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAAATTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTGTCGGATACGTCGGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAAACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAGTCTATTACCAATGATCGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGTTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCTGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCTCGAGAGGAGTCGCAGGAGATCAAGGAAGGGATCATCATTCAAGAATTACGACGCGGGTTTCTTCTCGGAGAACGTCTTCTAAGACCAGCAAGAGTAAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCTGAGAAACCGACCGATCAACCTGCAACTGCTACTGCTAGAGTAGACGAACACTAA

Protein sequence

MAALALSNYTLFSPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPVRRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEKPTDQPATATARVDEH

Homology

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BLAST of CmaCh12G001390 vs. Swiss-Prot
Match: GRPE_PROMP (Protein GrpE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=grpE PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-34
Identity = 88/237 (37.13%), Postives = 138/237 (58.23%), Query Frame = 1


Query: 78  VNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNFEREKDGLF 137
           VN  ED    EN+  ++   L +    N+Y E      + TI+  +A+L+  E+E + L 
Sbjct: 20  VNKNEDSSVIENQTSEDKQTLEVDDE-NIYAEDL----KNTITNNDARLEQLEKEHETL- 79

Query: 138 QKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLPMIDSFEKA 197
                        K  Y+R+ ADFDNFRKR  +++  +K     + + ++LP++D+FE+A
Sbjct: 80  -------------KSQYVRIAADFDNFRKRQSRDQDDLKVQLVSKALTAILPIVDNFERA 139

Query: 198 RQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEI 257
           RQQ+ P++++ + +  SYQG+YKQ VEVL+   +S +  V + FDP LHEAV RE SQE 
Sbjct: 140 RQQLKPESEEAQTLHRSYQGLYKQLVEVLKQQGVSPMRVVAQQFDPKLHEAVLREPSQEF 199

Query: 258 KEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEKPTDQPATATARVDE 315
            E III+EL+RG+ L  ++LR A VKVS GPG++NS     +   ++   +   + E
Sbjct: 200 NEDIIIEELQRGYHLEGKVLRHALVKVSMGPGQQNSQEPEEKDKVEEDIDSENPISE 237

[Close]

BLAST of CmaCh12G001390 vs. Swiss-Prot
Match: GRPE_PROM2 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9215) GN=grpE PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-34
Identity = 91/245 (37.14%), Postives = 140/245 (57.14%), Query Frame = 1


Query: 70  SAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNF 129
           S QD+ P   + E +   EN   DEL     +A+         +  + TIS  +A+LK  
Sbjct: 17  SNQDNAPEDISSEQNSTNEN---DELTSQKKEAINT-------EELKNTISNNDARLKQL 76

Query: 130 EREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLP 189
           E+E + L              K  Y+R+ ADFDNFRKR  +++  +K     + + ++LP
Sbjct: 77  EKEHETL--------------KNQYVRISADFDNFRKRQSRDQDDLKIQIVSKTLTAILP 136

Query: 190 MIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAV 249
           ++D+FE+ARQQ+ P++++ + +  SYQG+YKQ VEVL+   +S +  VG+ FDP+LHEAV
Sbjct: 137 IVDNFERARQQLQPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAV 196

Query: 250 AREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEKPTDQPATAT 309
            RE S+E  E  II+EL+RG+ L  ++LR A VKVS GPGK+NS     +   ++   + 
Sbjct: 197 LREPSEESDEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNSQQEVEKDTVEEDVNSE 237

Query: 310 ARVDE 315
               E
Sbjct: 257 VNTSE 237

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BLAST of CmaCh12G001390 vs. Swiss-Prot
Match: GRPE_PROM9 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9312) GN=grpE PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-34
Identity = 88/222 (39.64%), Postives = 135/222 (60.81%), Query Frame = 1


Query: 72  QDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNFER 131
           QD+ P  N+   +   EN   DEL   S Q    +  E      + TIS  +A+L+  E+
Sbjct: 19  QDNAPEDNSSAAEKTIEN---DEL---SPQKTEEINTEEL----KNTISNNDARLEQLEK 78

Query: 132 EKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLPMI 191
           E + L              K  Y+R+ ADFDNFRKR  +++  +K     + + ++LP++
Sbjct: 79  EHETL--------------KNQYVRISADFDNFRKRQSRDQDDLKVQLVSKTLTAILPIV 138

Query: 192 DSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAR 251
           D+FE+ARQQ+ P++++ + +  SYQG+YKQ VEVL+   +S +  VG+ FDP+LHEAV R
Sbjct: 139 DNFERARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAVLR 198

Query: 252 EESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNS 294
           E S+E KE +I++EL+RG+ L  ++LR A VKVS G G++NS
Sbjct: 199 EPSEEFKEDLIVEELQRGYHLEGKVLRHALVKVSMGHGQQNS 216

[Close]

BLAST of CmaCh12G001390 vs. Swiss-Prot
Match: GRPE_PROMS (Protein GrpE OS=Prochlorococcus marinus (strain AS9601) GN=grpE PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.4e-34
Identity = 77/178 (43.26%), Postives = 119/178 (66.85%), Query Frame = 1


Query: 116 QKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTV 175
           + +IS  +A+L+  E+E + L              K  Y+R+ ADFDNFRKR  +++  +
Sbjct: 53  KNSISNNDARLEQLEKEHETL--------------KNQYVRISADFDNFRKRQSRDQDDL 112

Query: 176 KNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 235
           K     + + ++LP++D+FE+ARQQ+ P++++ + +  SYQG+YKQ VEVL+   +S + 
Sbjct: 113 KIQLVSKTLTAILPIVDNFERARQQLKPESEEAQSLHRSYQGLYKQLVEVLKQQGVSPMR 172

Query: 236 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNS 294
            VG+ FDPSLHEAV RE S++ +E  II+EL+RG+ L  ++LR A VKVS GPGK+NS
Sbjct: 173 VVGQQFDPSLHEAVLREPSEKFEEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNS 216

[Close]

BLAST of CmaCh12G001390 vs. Swiss-Prot
Match: GRPE_PROM0 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9301) GN=grpE PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-33
Identity = 86/224 (38.39%), Postives = 132/224 (58.93%), Query Frame = 1


Query: 70  SAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNF 129
           S QD+ P   +   +   EN   DEL     +       E   +  + TIS  +A+L+  
Sbjct: 17  SIQDNAPEDKSSMQNSTTEN---DELSSQKTE-------EINTEELKNTISNNDARLEQL 76

Query: 130 EREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLP 189
           E+E + L              K  Y+R+ ADFDNFRKR  +++  +K     + + ++LP
Sbjct: 77  EKEHETL--------------KNQYVRISADFDNFRKRQSRDQDDLKIQLVSKTLTAILP 136

Query: 190 MIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAV 249
           ++D+FE+ARQQ+ P++++ + +  SYQG+YKQ VEVL+   +S +  VG+ FDP+LHEAV
Sbjct: 137 IVDNFERARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAV 196

Query: 250 AREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNS 294
            RE S+E +E  II+EL+RG+ L  ++LR A  KVS GPGK+ S
Sbjct: 197 LREPSEEFEEDFIIEELQRGYHLEGKVLRHALAKVSMGPGKQKS 216

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BLAST of CmaCh12G001390 vs. TrEMBL
Match: A0A0A0LQA8_CUCSA (GrpE protein homolog OS=Cucumis sativus GN=Csa_2G315400 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 6.3e-114
Identity = 232/320 (72.50%), Postives = 258/320 (80.62%), Query Frame = 1


Query: 1   MAALALSNYTLFSPRA-----STSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPA 60
           MAA ALSNYTLFSPR      S+SS+ ++S+S     L  LHNPRHRSRL  PL SFSP 
Sbjct: 1   MAAFALSNYTLFSPRPSSPFLSSSSKTLDSSSSFHQPLPLLHNPRHRSRLYDPLFSFSPT 60

Query: 61  SHSFPVRRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGN 120
           S S P+ R F  C SA +SV NVN EEDDGK   K G +  G  LQ LI VYREAFLDG+
Sbjct: 61  SSSSPLTRPFASCLSAHNSVANVNNEEDDGKAMEKDGYKFDGSGLQTLIEVYREAFLDGD 120

Query: 121 QKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTV 180
           QKT+S+VEA++K   REKD L +K+ + S E+TSGKE YIRLQADFDNFRKRSEKE+ TV
Sbjct: 121 QKTVSEVEARIKIIGREKDELSRKLMNISTEMTSGKEKYIRLQADFDNFRKRSEKEQHTV 180

Query: 181 KNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 240
           KNNAQKEV+ESLLPMID F+KARQQIVPQTDKEKKID+SYQGIYKQFVE LRSWR+SAVA
Sbjct: 181 KNNAQKEVLESLLPMIDHFDKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVA 240

Query: 241 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPT 300
            VGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPG+K+S T
Sbjct: 241 TVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGRKSSRT 300

Query: 301 TNSEKPTDQPATATARVDEH 316
            + E+   QPA A A VDEH
Sbjct: 301 VDGEQ---QPA-AAAVVDEH 316

[Close]

BLAST of CmaCh12G001390 vs. TrEMBL
Match: E0CRD7_VITVI (GrpE protein homolog OS=Vitis vinifera GN=VIT_18s0001g04190 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.3e-82
Identity = 180/316 (56.96%), Postives = 227/316 (71.84%), Query Frame = 1


Query: 3   ALALSNYTLFSPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPVR 62
           A +LSN+ LF+P+               PS     +P H S+   P+L F  ++ S  +R
Sbjct: 2   AFSLSNHLLFTPK---------------PSKTLALHPPHPSK---PILGFRLSTSSPILR 61

Query: 63  RSFLPCFSAQDSVPNVNTEEDDGKYENKAG----DELHGLSLQALINVYREAFLDGNQKT 122
           RSF P  + QDS P  N EE+  +Y+ K      D+     L++LI  Y++A LDG++K 
Sbjct: 62  RSFKPFLALQDSTPYTNNEEEGSRYDVKTSKSEADQKPLSVLKSLIKAYKDAVLDGDEKA 121

Query: 123 ISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNN 182
           +S++EA +   E EK  L QKVS  SAEITSGKE YIRLQADFDNFRKRSEKE+LTV+ +
Sbjct: 122 VSEIEAMIDTIESEKAELAQKVSALSAEITSGKEKYIRLQADFDNFRKRSEKERLTVRTD 181

Query: 183 AQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVG 242
           AQ EV+ESLLPMID+FE+A+QQI P+T+KEKKID SYQGIYKQFVE++RS  ++AVA VG
Sbjct: 182 AQGEVVESLLPMIDNFERAKQQIKPETEKEKKIDTSYQGIYKQFVEIMRSCHVAAVATVG 241

Query: 243 RPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNS 302
           +PFDP+LHEA+AREESQE KEGIIIQE+RRGFLLG+RLLRPA VKVS GPG+K +    +
Sbjct: 242 KPFDPALHEAIAREESQEFKEGIIIQEIRRGFLLGDRLLRPAMVKVSTGPGRKKTSAV-A 297

Query: 303 EKPTDQPATATARVDE 315
           +K T QPATA A VDE
Sbjct: 302 DKSTGQPATA-AGVDE 297

[Close]

BLAST of CmaCh12G001390 vs. TrEMBL
Match: B9RJC6_RICCO (GrpE protein homolog OS=Ricinus communis GN=RCOM_1033170 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.3e-78
Identity = 176/322 (54.66%), Postives = 228/322 (70.81%), Query Frame = 1


Query: 3   ALALSNYTLFSPRASTSS------RAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPAS 62
           A++ SN++L +P   + S      + +E+ S++ P L F H+  H S  +  + + SP +
Sbjct: 2   AVSFSNHSLLAPPRLSPSFSAKPPKTLETKSILLP-LQFHHSKLHLSNST--ISNSSPVT 61

Query: 63  HSFPVRRSFLPCFSAQDSVPNVNTEE----DDGKYENKAGDELHGLSLQALINVYREAFL 122
           ++   RRSF    +  DS P+ N EE    +D K   K  D  H  SL  LIN+Y+EA L
Sbjct: 62  NNHIERRSFKAYLATDDSSPDTNNEEGSDQNDKKALQKQTDAKHLPSLTKLINIYKEAIL 121

Query: 123 DGNQKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEK 182
            G+++T++ +EA++K  E     L QKVSD S EITSGKE YIRLQADFDNFRKRSEKE+
Sbjct: 122 LGDERTVTDIEARIKIIENTNYELVQKVSDLSTEITSGKEKYIRLQADFDNFRKRSEKER 181

Query: 183 LTVKNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRIS 242
            T++++AQ EVIESLLPM+DSFE+A+QQI P+T+ EKKID SYQGIYKQFVE++RS +++
Sbjct: 182 HTIRSDAQGEVIESLLPMVDSFERAKQQIKPETEMEKKIDTSYQGIYKQFVEIMRSLQVA 241

Query: 243 AVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKN 302
            VA VG+PFDPSLHEA+AREESQE KEGIIIQE RRGFLLG RLLRPA VKVS GPG+K 
Sbjct: 242 VVATVGKPFDPSLHEAIAREESQEYKEGIIIQEFRRGFLLGGRLLRPAMVKVSAGPGRKK 301

Query: 303 SPTTNSEKPTDQPATATARVDE 315
           +P        +QPATA A VD+
Sbjct: 302 APV-----GAEQPATA-AGVDD 314

[Close]

BLAST of CmaCh12G001390 vs. TrEMBL
Match: A0A0D2S7D1_GOSRA (GrpE protein homolog OS=Gossypium raimondii GN=B456_009G241800 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 6.8e-76
Identity = 167/311 (53.70%), Postives = 220/311 (70.74%), Query Frame = 1


Query: 3   ALALSNYTLFSPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPV- 62
           A + SN++L  P  S S +  + T + +  + FL+    R R S P   FSP++ SFP+ 
Sbjct: 2   AASFSNHSLLPPHFSASLKPSKHTHIASSPVQFLYQ---RPRFSKPFSGFSPSNLSFPLN 61

Query: 63  ------RRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGN 122
                 R +F    SAQ+S    N +         AG++    SL+A+I VYREA L+G+
Sbjct: 62  IKNCPQRWTFKASLSAQESARTENVKAS-------AGEDFP--SLKAMIRVYREALLNGD 121

Query: 123 QKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTV 182
            + +S++E+++   E EKDGL ++V + SAEITSGKE YIRLQADFDN+RKRSEKE+LT 
Sbjct: 122 DRIVSEIESRISILENEKDGLEKQVLELSAEITSGKEKYIRLQADFDNYRKRSEKERLTA 181

Query: 183 KNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 242
           +++A+ EV+ESLLPM+DSFE+A+QQI P+T+KEKKID SYQGIYKQFVE++RS +++ V 
Sbjct: 182 RSDAKGEVMESLLPMVDSFERAKQQIKPETEKEKKIDTSYQGIYKQFVEIMRSLQVAVVP 241

Query: 243 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPG--KKNS 302
            VG+PFDPSLHEA+AREESQE KEGIIIQE RRGFLLG+RLLRPA VKVS GPG  KK +
Sbjct: 242 TVGKPFDPSLHEAIAREESQEFKEGIIIQEFRRGFLLGDRLLRPAMVKVSSGPGSSKKAT 300

Query: 303 PTTNSEKPTDQ 305
             T+     DQ
Sbjct: 302 VVTHESLGDDQ 300

[Close]

BLAST of CmaCh12G001390 vs. TrEMBL
Match: A0A0B0NCP0_GOSAR (GrpE protein homolog OS=Gossypium arboreum GN=F383_03151 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.3e-74
Identity = 166/312 (53.21%), Postives = 221/312 (70.83%), Query Frame = 1


Query: 3   ALALSNYTLFSPRASTSS-RAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPV 62
           A + SN++LF    S SS +  + T + +  + FL+    R   S P   FSP++ SFP+
Sbjct: 2   AASFSNHSLFPSHFSASSLKPSKHTHIASSPVQFLYQ---RPSFSKPFSGFSPSNLSFPL 61

Query: 63  RR-------SFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDG 122
            R       +F    SAQ+S    N +         AG++  GL  +A+I VYREA L+G
Sbjct: 62  NRKNYPQRGTFKASLSAQESARTENVKAS-------AGEDFPGL--KAMIGVYREALLNG 121

Query: 123 NQKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLT 182
           + + +S++E+++   E EK+GL ++V + SAEITSGKE YIRLQADFDN+RKRSEKE+LT
Sbjct: 122 DDRIVSEIESRISILENEKNGLEKQVLELSAEITSGKEKYIRLQADFDNYRKRSEKERLT 181

Query: 183 VKNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAV 242
            +++A+ EV+ESLLPM+DSFE+A+QQI P+T+KEKKID+SYQGIYKQFVE++RS +++ V
Sbjct: 182 ARSDAKGEVMESLLPMVDSFERAKQQIKPETEKEKKIDMSYQGIYKQFVEIMRSLQVAVV 241

Query: 243 AAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPG--KKN 302
             VG+PFDPSLHEA+AREESQE KEGIIIQE RRGFLLG+RLLRPA VKVS GPG  KK 
Sbjct: 242 PTVGKPFDPSLHEAIAREESQEFKEGIIIQEFRRGFLLGDRLLRPAMVKVSSGPGSSKKA 301

Query: 303 SPTTNSEKPTDQ 305
           +  T+     DQ
Sbjct: 302 TVVTHESSGDDQ 301

[Close]

BLAST of CmaCh12G001390 vs. TAIR10
Match: AT1G36390.1 (AT1G36390.1 Co-chaperone GrpE family protein)

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-56
Identity = 132/287 (45.99%), Postives = 188/287 (65.51%), Query Frame = 1


Query: 13  SPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPVRRSFLPCFSAQ 72
           SP  S SS +  S +L  P    LH     S +S PL+S    S  FP+       FSA 
Sbjct: 12  SPCFSFSSPSSSSKTL--PLRNNLHFHGRPSPIS-PLIS--KPSRKFPI-------FSAH 71

Query: 73  DSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNFERE 132
            +    N+EE + K +           ++ LI  Y++A L+G++ +++++E      E+E
Sbjct: 72  QTN---NSEEANSKQQ---------ADVKTLIRSYKQALLNGDETSVTEIETMFCKIEKE 131

Query: 133 KDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLPMID 192
           K+ + QKV   S +I S KE  IRLQADFDN RK+ +K++L+ ++NA+ ++++SLLP+ID
Sbjct: 132 KNKMDQKVLSLSMKIASEKEMKIRLQADFDNTRKKLDKDRLSTESNAKVQILKSLLPIID 191

Query: 193 SFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVARE 252
           SFEKA+ Q+   TDKEKKID SYQGIY+QFVEVLR  R+S +A VG+PFDP LHEA++RE
Sbjct: 192 SFEKAKLQVRVDTDKEKKIDTSYQGIYRQFVEVLRYLRVSVIATVGKPFDPLLHEAISRE 251

Query: 253 ESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSE 300
           ES+ +K GII +EL +GF+LG+R+LRPA+VKVS GP  K +P+   E
Sbjct: 252 ESEAVKAGIITEELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274

[Close]

BLAST of CmaCh12G001390 vs. TAIR10
Match: AT5G17710.2 (AT5G17710.2 Co-chaperone GrpE family protein)

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-52
Identity = 108/233 (46.35%), Postives = 157/233 (67.38%), Query Frame = 1


Query: 72  QDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTISKVEAKLKNFER 131
           Q++   V+ E ++   E    +E     + AL+  Y+EA  D N+  I+++EA LK+ E 
Sbjct: 84  QETDGAVDVENENASAEEGEAEEEEAAVITALLKSYKEALADNNEGKIAEIEASLKSIED 143

Query: 132 EKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLPMI 191
           EK  L  KV+  S E++  ++  IR+ ADFDNFRKR+E+E+L + +NAQ EV+E+LL ++
Sbjct: 144 EKFLLADKVASLSNELSVERDRLIRISADFDNFRKRTERERLNLVSNAQGEVVENLLAVL 203

Query: 192 DSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAR 251
           D+FE+A+ QI  +T+ E+K+  SYQ IYKQFVE+L S  +  V  VG+ FDP LHEA+ R
Sbjct: 204 DNFERAKSQIKVETEGEEKVTNSYQSIYKQFVEILGSLGVIHVETVGKQFDPMLHEAIMR 263

Query: 252 EESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEKPTDQ 305
           E+S E +EGI+++E R+GFLLGERLLRP+ VKVS GPG +       E+ T Q
Sbjct: 264 EDSAEYEEGIVLEEYRKGFLLGERLLRPSMVKVSAGPGPEKPLEAEGEEATAQ 316

[Close]

BLAST of CmaCh12G001390 vs. TAIR10
Match: AT4G26780.1 (AT4G26780.1 Co-chaperone GrpE family protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 42/164 (25.61%), Postives = 75/164 (45.73%), Query Frame = 1


Query: 140 VSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQKEVIESLLPMIDSFEKARQ 199
           +S+   EI   K+  +R  A+ +N   R+ ++    K  A +   +SLL + D+  +A  
Sbjct: 155 LSEKEEEIKQLKDKVLRTYAEMENVMDRTRRDAENTKKYAVQNFAKSLLDVADNLGRASS 214

Query: 200 QIVPQTDKEKKIDVS-------------YQGIY---KQFVEVLRSWRISAVAAVGRPFDP 259
            +    +   K+D S              +G+    KQ  EV + + +     +  PFDP
Sbjct: 215 VV---KESFSKLDTSEDSAGAAPLLKTLLEGVEMTEKQLAEVFKKFGMEKYDPINEPFDP 274

Query: 260 SLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKG 288
           + H AV +       EG +   L+ G+ L +R++RPA V V++G
Sbjct: 275 NRHNAVFQVPDASKPEGTVAHVLKSGYTLYDRVIRPAEVGVTQG 315

[Close]

BLAST of CmaCh12G001390 vs. TAIR10
Match: AT5G55200.1 (AT5G55200.1 Co-chaperone GrpE family protein)

HSP 1 Score: 48.9 bits (115), Expect = 6.6e-06
Identity = 46/186 (24.73%), Postives = 81/186 (43.55%), Query Frame = 1


Query: 123 EAKLKNFEREKDGLFQKVSDTS-------AEITSGKENYIRLQADFDNFRKRSEKEKLTV 182
           +A++   +  +D L + VS+          +I   K+ ++R  A+  N   R+ +   + 
Sbjct: 106 DAEIDFDDLSRDDLVKLVSEKEDLLKVQQKDIMEMKDKFLRTYAEQQNLMDRTNRNAESA 165

Query: 183 KNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVS-------------YQGIY--- 242
           K  A +    SLL + D+ E+A   +    +   KID S              +G+    
Sbjct: 166 KKFAVQNFATSLLDVADNLERASSVV---KESFSKIDTSKDLAGATPLLKNLLEGVEMTE 225

Query: 243 KQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRP 286
           KQ  EV R   +     +  PF+P+ H AV +       +G I   L+ G+ L +R++RP
Sbjct: 226 KQLAEVFRKAGLVKEDPLNEPFNPNRHNAVFQVPDASKPKGTIAHVLKSGYSLYDRVIRP 285

[Close]

BLAST of CmaCh12G001390 vs. NCBI nr
Match: gi|659089167|ref|XP_008445362.1| (PREDICTED: grpE protein homolog, mitochondrial [Cucumis melo])

HSP 1 Score: 424.1 bits (1089), Expect = 2.2e-115
Identity = 235/320 (73.44%), Postives = 259/320 (80.94%), Query Frame = 1


Query: 1   MAALALSNYTLFSPRA-----STSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPA 60
           MAA ALSNYTLFSPR      S+SS+ ++STS     L  LHNPRHRSRL  PL SFSP 
Sbjct: 1   MAAFALSNYTLFSPRPSSPFLSSSSKTLDSTSPFHQPLPLLHNPRHRSRLCDPLFSFSPT 60

Query: 61  SHSFPVRRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGN 120
           S S P+ RSF PC SA  SV NVN EEDDGK   K G +  G SLQ LI VYREAFLDG+
Sbjct: 61  SSSSPLTRSFAPCLSAHSSVANVNNEEDDGKAVEKDGYKFDGSSLQTLIEVYREAFLDGD 120

Query: 121 QKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTV 180
           QKT+S+VEA++K   REKD L +K+S+   E+TSGKE YIRLQADFDNFRKRSEKE+  V
Sbjct: 121 QKTVSEVEARIKIIGREKDELSRKLSNILTEMTSGKEKYIRLQADFDNFRKRSEKEQHNV 180

Query: 181 KNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 240
           KNNAQKEVIESLLPMID FEKARQQIVPQTDKEKKID+SYQGIYKQFVE LRSWR+SAVA
Sbjct: 181 KNNAQKEVIESLLPMIDHFEKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVA 240

Query: 241 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPT 300
            VGRPFDPSLHEAVAREESQEIKEGI+IQELRRGFLLGERLLRPARVKVSKGPG+K+S T
Sbjct: 241 TVGRPFDPSLHEAVAREESQEIKEGIVIQELRRGFLLGERLLRPARVKVSKGPGRKSSRT 300

Query: 301 TNSEKPTDQPATATARVDEH 316
            + ++   QPA A A VDEH
Sbjct: 301 IDGKQ---QPA-AAAGVDEH 316

[Close]

BLAST of CmaCh12G001390 vs. NCBI nr
Match: gi|449466450|ref|XP_004150939.1| (PREDICTED: grpE protein homolog, mitochondrial [Cucumis sativus])

HSP 1 Score: 418.7 bits (1075), Expect = 9.0e-114
Identity = 232/320 (72.50%), Postives = 258/320 (80.62%), Query Frame = 1


Query: 1   MAALALSNYTLFSPRA-----STSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPA 60
           MAA ALSNYTLFSPR      S+SS+ ++S+S     L  LHNPRHRSRL  PL SFSP 
Sbjct: 1   MAAFALSNYTLFSPRPSSPFLSSSSKTLDSSSSFHQPLPLLHNPRHRSRLYDPLFSFSPT 60

Query: 61  SHSFPVRRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGN 120
           S S P+ R F  C SA +SV NVN EEDDGK   K G +  G  LQ LI VYREAFLDG+
Sbjct: 61  SSSSPLTRPFASCLSAHNSVANVNNEEDDGKAMEKDGYKFDGSGLQTLIEVYREAFLDGD 120

Query: 121 QKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTV 180
           QKT+S+VEA++K   REKD L +K+ + S E+TSGKE YIRLQADFDNFRKRSEKE+ TV
Sbjct: 121 QKTVSEVEARIKIIGREKDELSRKLMNISTEMTSGKEKYIRLQADFDNFRKRSEKEQHTV 180

Query: 181 KNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 240
           KNNAQKEV+ESLLPMID F+KARQQIVPQTDKEKKID+SYQGIYKQFVE LRSWR+SAVA
Sbjct: 181 KNNAQKEVLESLLPMIDHFDKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVA 240

Query: 241 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPT 300
            VGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPG+K+S T
Sbjct: 241 TVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGRKSSRT 300

Query: 301 TNSEKPTDQPATATARVDEH 316
            + E+   QPA A A VDEH
Sbjct: 301 VDGEQ---QPA-AAAVVDEH 316

[Close]

BLAST of CmaCh12G001390 vs. NCBI nr
Match: gi|225459431|ref|XP_002285824.1| (PREDICTED: grpE protein homolog, mitochondrial [Vitis vinifera])

HSP 1 Score: 314.7 bits (805), Expect = 1.8e-82
Identity = 180/316 (56.96%), Postives = 227/316 (71.84%), Query Frame = 1


Query: 3   ALALSNYTLFSPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPVR 62
           A +LSN+ LF+P+               PS     +P H S+   P+L F  ++ S  +R
Sbjct: 2   AFSLSNHLLFTPK---------------PSKTLALHPPHPSK---PILGFRLSTSSPILR 61

Query: 63  RSFLPCFSAQDSVPNVNTEEDDGKYENKAG----DELHGLSLQALINVYREAFLDGNQKT 122
           RSF P  + QDS P  N EE+  +Y+ K      D+     L++LI  Y++A LDG++K 
Sbjct: 62  RSFKPFLALQDSTPYTNNEEEGSRYDVKTSKSEADQKPLSVLKSLIKAYKDAVLDGDEKA 121

Query: 123 ISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNN 182
           +S++EA +   E EK  L QKVS  SAEITSGKE YIRLQADFDNFRKRSEKE+LTV+ +
Sbjct: 122 VSEIEAMIDTIESEKAELAQKVSALSAEITSGKEKYIRLQADFDNFRKRSEKERLTVRTD 181

Query: 183 AQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVG 242
           AQ EV+ESLLPMID+FE+A+QQI P+T+KEKKID SYQGIYKQFVE++RS  ++AVA VG
Sbjct: 182 AQGEVVESLLPMIDNFERAKQQIKPETEKEKKIDTSYQGIYKQFVEIMRSCHVAAVATVG 241

Query: 243 RPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNS 302
           +PFDP+LHEA+AREESQE KEGIIIQE+RRGFLLG+RLLRPA VKVS GPG+K +    +
Sbjct: 242 KPFDPALHEAIAREESQEFKEGIIIQEIRRGFLLGDRLLRPAMVKVSTGPGRKKTSAV-A 297

Query: 303 EKPTDQPATATARVDE 315
           +K T QPATA A VDE
Sbjct: 302 DKSTGQPATA-AGVDE 297

[Close]

BLAST of CmaCh12G001390 vs. NCBI nr
Match: gi|255545570|ref|XP_002513845.1| (PREDICTED: protein GrpE [Ricinus communis])

HSP 1 Score: 300.1 bits (767), Expect = 4.7e-78
Identity = 176/322 (54.66%), Postives = 228/322 (70.81%), Query Frame = 1


Query: 3   ALALSNYTLFSPRASTSS------RAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPAS 62
           A++ SN++L +P   + S      + +E+ S++ P L F H+  H S  +  + + SP +
Sbjct: 2   AVSFSNHSLLAPPRLSPSFSAKPPKTLETKSILLP-LQFHHSKLHLSNST--ISNSSPVT 61

Query: 63  HSFPVRRSFLPCFSAQDSVPNVNTEE----DDGKYENKAGDELHGLSLQALINVYREAFL 122
           ++   RRSF    +  DS P+ N EE    +D K   K  D  H  SL  LIN+Y+EA L
Sbjct: 62  NNHIERRSFKAYLATDDSSPDTNNEEGSDQNDKKALQKQTDAKHLPSLTKLINIYKEAIL 121

Query: 123 DGNQKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEK 182
            G+++T++ +EA++K  E     L QKVSD S EITSGKE YIRLQADFDNFRKRSEKE+
Sbjct: 122 LGDERTVTDIEARIKIIENTNYELVQKVSDLSTEITSGKEKYIRLQADFDNFRKRSEKER 181

Query: 183 LTVKNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRIS 242
            T++++AQ EVIESLLPM+DSFE+A+QQI P+T+ EKKID SYQGIYKQFVE++RS +++
Sbjct: 182 HTIRSDAQGEVIESLLPMVDSFERAKQQIKPETEMEKKIDTSYQGIYKQFVEIMRSLQVA 241

Query: 243 AVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKN 302
            VA VG+PFDPSLHEA+AREESQE KEGIIIQE RRGFLLG RLLRPA VKVS GPG+K 
Sbjct: 242 VVATVGKPFDPSLHEAIAREESQEYKEGIIIQEFRRGFLLGGRLLRPAMVKVSAGPGRKK 301

Query: 303 SPTTNSEKPTDQPATATARVDE 315
           +P        +QPATA A VD+
Sbjct: 302 APV-----GAEQPATA-AGVDD 314

[Close]

BLAST of CmaCh12G001390 vs. NCBI nr
Match: gi|823227882|ref|XP_012446714.1| (PREDICTED: grpE protein homolog, mitochondrial [Gossypium raimondii])

HSP 1 Score: 292.4 bits (747), Expect = 9.8e-76
Identity = 167/311 (53.70%), Postives = 220/311 (70.74%), Query Frame = 1


Query: 3   ALALSNYTLFSPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFPV- 62
           A + SN++L  P  S S +  + T + +  + FL+    R R S P   FSP++ SFP+ 
Sbjct: 2   AASFSNHSLLPPHFSASLKPSKHTHIASSPVQFLYQ---RPRFSKPFSGFSPSNLSFPLN 61

Query: 63  ------RRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGN 122
                 R +F    SAQ+S    N +         AG++    SL+A+I VYREA L+G+
Sbjct: 62  IKNCPQRWTFKASLSAQESARTENVKAS-------AGEDFP--SLKAMIRVYREALLNGD 121

Query: 123 QKTISKVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTV 182
            + +S++E+++   E EKDGL ++V + SAEITSGKE YIRLQADFDN+RKRSEKE+LT 
Sbjct: 122 DRIVSEIESRISILENEKDGLEKQVLELSAEITSGKEKYIRLQADFDNYRKRSEKERLTA 181

Query: 183 KNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 242
           +++A+ EV+ESLLPM+DSFE+A+QQI P+T+KEKKID SYQGIYKQFVE++RS +++ V 
Sbjct: 182 RSDAKGEVMESLLPMVDSFERAKQQIKPETEKEKKIDTSYQGIYKQFVEIMRSLQVAVVP 241

Query: 243 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPG--KKNS 302
            VG+PFDPSLHEA+AREESQE KEGIIIQE RRGFLLG+RLLRPA VKVS GPG  KK +
Sbjct: 242 TVGKPFDPSLHEAIAREESQEFKEGIIIQEFRRGFLLGDRLLRPAMVKVSSGPGSSKKAT 300

Query: 303 PTTNSEKPTDQ 305
             T+     DQ
Sbjct: 302 VVTHESLGDDQ 300

The following BLAST results are available for this feature:

BLAST of CmaCh12G001390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRPE_PROMP	1.1e-34	37.13	Protein GrpE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)...	[more]
GRPE_PROM2	1.9e-34	37.14	Protein GrpE OS=Prochlorococcus marinus (strain MIT 9215) GN=grpE PE=3 SV=1	[more]
GRPE_PROM9	4.1e-34	39.64	Protein GrpE OS=Prochlorococcus marinus (strain MIT 9312) GN=grpE PE=3 SV=1	[more]
GRPE_PROMS	5.4e-34	43.26	Protein GrpE OS=Prochlorococcus marinus (strain AS9601) GN=grpE PE=3 SV=1	[more]
GRPE_PROM0	1.2e-33	38.39	Protein GrpE OS=Prochlorococcus marinus (strain MIT 9301) GN=grpE PE=3 SV=1	[more]

BLAST of CmaCh12G001390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQA8_CUCSA	6.3e-114	72.50	GrpE protein homolog OS=Cucumis sativus GN=Csa_2G315400 PE=3 SV=1	[more]
E0CRD7_VITVI	1.3e-82	56.96	GrpE protein homolog OS=Vitis vinifera GN=VIT_18s0001g04190 PE=3 SV=1	[more]
B9RJC6_RICCO	3.3e-78	54.66	GrpE protein homolog OS=Ricinus communis GN=RCOM_1033170 PE=3 SV=1	[more]
A0A0D2S7D1_GOSRA	6.8e-76	53.70	GrpE protein homolog OS=Gossypium raimondii GN=B456_009G241800 PE=3 SV=1	[more]
A0A0B0NCP0_GOSAR	1.3e-74	53.21	GrpE protein homolog OS=Gossypium arboreum GN=F383_03151 PE=3 SV=1	[more]

BLAST of CmaCh12G001390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36390.1	4.1e-56	45.99	Co-chaperone GrpE family protein	[more]
AT5G17710.2	3.6e-52	46.35	Co-chaperone GrpE family protein	[more]
AT4G26780.1	1.1e-08	25.61	Co-chaperone GrpE family protein	[more]
AT5G55200.1	6.6e-06	24.73	Co-chaperone GrpE family protein	[more]

BLAST of CmaCh12G001390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089167\|ref\|XP_008445362.1\|	2.2e-115	73.44	PREDICTED: grpE protein homolog, mitochondrial [Cucumis melo]	[more]
gi\|449466450\|ref\|XP_004150939.1\|	9.0e-114	72.50	PREDICTED: grpE protein homolog, mitochondrial [Cucumis sativus]	[more]
gi\|225459431\|ref\|XP_002285824.1\|	1.8e-82	56.96	PREDICTED: grpE protein homolog, mitochondrial [Vitis vinifera]	[more]
gi\|255545570\|ref\|XP_002513845.1\|	4.7e-78	54.66	PREDICTED: protein GrpE [Ricinus communis]	[more]
gi\|823227882\|ref\|XP_012446714.1\|	9.8e-76	53.70	PREDICTED: grpE protein homolog, mitochondrial [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000740	GrpE
IPR009012	GrpE_head
IPR013805	GrpE_coiled_coil

Vocabulary: **Molecular Function**
Term	Definition
GO:0000774	adenyl-nucleotide exchange factor activity
GO:0042803	protein homodimerization activity
GO:0051087	chaperone binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006457	protein folding
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0044702	single organism reproductive process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000774	adenyl-nucleotide exchange factor activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G001390.1	CmaCh12G001390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000740	GrpE nucleotide exchange factor	PRINTS	PR00773	GRPEPROTEIN	coord: 183..198 score: 2.0E-24coord: 265..284 score: 2.0E-24coord: 155..171 score: 2.0E-24coord: 238..253 score: 2.0
IPR000740	GrpE nucleotide exchange factor	HAMAP	MF_01151	GrpE	coord: 72..286 score: 17
IPR000740	GrpE nucleotide exchange factor	PANTHER	PTHR21237	GRPE PROTEIN	coord: 3..92 score: 6.0E-119coord: 112..289 score: 6.0E
IPR000740	GrpE nucleotide exchange factor	PFAM	PF01025	GrpE	coord: 130..286 score: 7.6
IPR000740	GrpE nucleotide exchange factor	PROSITE	PS01071	GRPE	coord: 241..284 scor
IPR009012	GrpE nucleotide exchange factor, head	GENE3D	G3DSA:2.30.22.10		coord: 231..288 score: 5.5
IPR009012	GrpE nucleotide exchange factor, head	unknown	SSF51064	Head domain of nucleotide exchange factor GrpE	coord: 233..288 score: 1.16
IPR013805	GrpE nucleotide exchange factor, coiled-coil	GENE3D	G3DSA:3.90.20.20		coord: 131..227 score: 3.0
None	No IPR available	unknown	Coil	Coil	coord: 112..146 scor
None	No IPR available	PANTHER	PTHR21237:SF4	GRPE PROTEIN HOMOLOG	coord: 112..289 score: 6.0E-119coord: 3..92 score: 6.0E
None	No IPR available	unknown	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE	coord: 136..228 score: 2.35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G001390	Cla022074	Watermelon (97103) v1	cmawmB149
CmaCh12G001390	Csa2G315400	Cucumber (Chinese Long) v2	cmacuB179
CmaCh12G001390	MELO3C011373	Melon (DHL92) v3.5.1	cmameB157
CmaCh12G001390	ClCG08G010900	Watermelon (Charleston Gray)	cmawcgB170
CmaCh12G001390	CSPI02G15970	Wild cucumber (PI 183967)	cmacpiB180
CmaCh12G001390	CmoCh12G001120	Cucurbita moschata (Rifu)	cmacmoB176
CmaCh12G001390	Lsi08G009440	Bottle gourd (USVL1VR-Ls)	cmalsiB185
CmaCh12G001390	Cp4.1LG07g01180	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G001390	MELO3C011373.2	Melon (DHL92) v3.6.1	cmamedB171
CmaCh12G001390	CsaV3_1G023030	Cucumber (Chinese Long) v3	cmacucB0189
CmaCh12G001390	Cla97C08G153790	Watermelon (97103) v2	cmawmbB195
CmaCh12G001390	Bhi04G000593	Wax gourd	cmawgoB0215
CmaCh12G001390	CsGy2G016570	Cucumber (Gy14) v2	cgybcmaB184
CmaCh12G001390	Carg20555	Silver-seed gourd	carcmaB0920

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G001390	Silver-seed gourd	carcmaB0185
CmaCh12G001390	Wax gourd	cmawgoB0197
CmaCh12G001390	Cucurbita maxima (Rimu)	cmacmaB192
CmaCh12G001390	Cucurbita moschata (Rifu)	cmacmoB192
CmaCh12G001390	Cucurbita pepo (Zucchini)	cmacpeB172