Cla022074 (gene) Watermelon (97103) v1

Overview
NameCla022074
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionProtein grpE (AHRD V1 ***- B8HLD4_CYAP4); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor
LocationChr8 : 20128708 .. 20129597 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGATGGATATCAGTTTGATGGATCTAGCTTGCAGACCCTCATCGAGGTATACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAGTCGAGGAAAGACTAAAAATAATTGGGAGGGAGAAAGATGGGTTGTCCCAGAAAGTGTCAAATATATCGGCGGAGATAACGTCTGGAAAAGAGAAATATATACGCTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACATACTGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTGCCAATGATTGACAGTTTTGAGAAAGCCAGGCAAAAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACGTAAGCTACCAGGGTATATACAAGCAATTTGTCGAGACGTTGAGGAGCTGGCGTGTCTCAGCCGTTGCCACAGTAGGAAGGCCATTTGATCCCTCAGTAAGTTAAATCTTTTGAATAAAATGAGATACCTTCATTTCAATGTACAAACTTGTCTGTTTGATGCATAGTCTTCATGCTTGCTAATTTTTCTTACTATTACTAGAGGGTTTAGAACAGAATGAATGTTTGTTCTTATTGAGTCATTGTACTTACTTGAAGTTCTTTGCAAGTGATTCATGTTAAGTGTATCTTTGTAATATTTGAAGTTCTTTCTTTGGTTGCAGTTACATGAAGCTGTAGCACGAGAGGAGTCACCGGAGATCAAGGAAGGGATCGTTATTCAAGAATTACGACGGGGGTTTATGCTTGGTGAACGGGTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCAGGTAGGAAGAATTCCCCGACAATCGATGCAGGGCAACAACCAGCAGCTGCTGTGGAGTAG

mRNA sequence

ATGGAAAAGGATGGATATCAGTTTGATGGATCTAGCTTGCAGACCCTCATCGAGGTATACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAGTCGAGGAAAGACTAAAAATAATTGGGAGGGAGAAAGATGGGTTGTCCCAGAAAGTGTCAAATATATCGGCGGAGATAACGTCTGGAAAAGAGAAATATATACGCTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACATACTGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTGCCAATGATTGACAGTTTTGAGAAAGCCAGGCAAAAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACGTAAGCTACCAGGGTATATACAAGCAATTTGTCGAGACGTTGAGGAGCTGGCGTGTCTCAGCCGTTGCCACAGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCACGAGAGGAGTCACCGGAGATCAAGGAAGGGATCGTTATTCAAGAATTACGACGGGGGTTTATGCTTGGTGAACGGGTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCAGGTAGGAAGAATTCCCCGACAATCGATGCAGGGCAACAACCAGCAGCTGCTGTGGAGTAG

Coding sequence (CDS)

ATGGAAAAGGATGGATATCAGTTTGATGGATCTAGCTTGCAGACCCTCATCGAGGTATACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAGTCGAGGAAAGACTAAAAATAATTGGGAGGGAGAAAGATGGGTTGTCCCAGAAAGTGTCAAATATATCGGCGGAGATAACGTCTGGAAAAGAGAAATATATACGCTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACATACTGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTGCCAATGATTGACAGTTTTGAGAAAGCCAGGCAAAAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACGTAAGCTACCAGGGTATATACAAGCAATTTGTCGAGACGTTGAGGAGCTGGCGTGTCTCAGCCGTTGCCACAGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCACGAGAGGAGTCACCGGAGATCAAGGAAGGGATCGTTATTCAAGAATTACGACGGGGGTTTATGCTTGGTGAACGGGTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCAGGTAGGAAGAATTCCCCGACAATCGATGCAGGGCAACAACCAGCAGCTGCTGTGGAGTAG

Protein sequence

MEKDGYQFDGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLRPARVKVSKGPGRKNSPTIDAGQQPAAAVE
Homology
[Close]
BLAST of Cla022074 vs. Swiss-Prot
Match: GRPE_THEEB (Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35
Identity = 79/161 (49.07%), Postives = 108/161 (67.08%), Query Frame = 1 

Query: 54  SNISAEITSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQK 113
           +++S  +     +YIRL ADF+NFRKR+++E+  ++   +  VI  LLP++DSFE AR  
Sbjct: 88  ASLSQVVEERNSQYIRLAADFENFRKRTQREKEELELQIKCSVIADLLPVVDSFELARTH 147

Query: 114 IVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEG 173
           I  +T+ E+KI  SYQG+YKQ VE L+   VSA+   G+PFDP+LHEAV RE + E  EG
Sbjct: 148 IQTETEAEEKIHRSYQGVYKQLVECLKRIGVSAMQAKGKPFDPNLHEAVLREATNEHPEG 207

Query: 174 IVIQELRRGFMLGERVLRPARVKVS----KGPGRKNSPTID 211
            VI+EL+RG+MLG+RVLR A VKV+    +G     +PT D
Sbjct: 208 TVIEELKRGYMLGDRVLRHAMVKVAAPPEEGSASNTNPTND 248

[Close]
BLAST of Cla022074 vs. Swiss-Prot
Match: GRPE_PROM4 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9211) GN=grpE PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-35
Identity = 80/206 (38.83%), Postives = 126/206 (61.17%), Query Frame = 1 

Query: 14  QTLIEVYREAFLDGDQKTVSEVEERLKIIGRE--------KDGLSQKVSN------ISAE 73
           ++ +++ +EA    D+ ++S V E  +  G E        KD  SQ + N      +  E
Sbjct: 16  ESAVDLAQEAKPTSDEPSLSNVAEGSQEAGAETDVTSSDAKDSSSQALDNEARLEQLERE 75

Query: 74  ITSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTD 133
             +   +Y+R+ ADFDNFRKR  +++  ++   Q   + S+LP++D+F++ARQ++ P+ +
Sbjct: 76  HETLNSQYMRIAADFDNFRKRQSRDQDDLRLQLQCNTLSSILPVVDNFDRARQQLNPEGE 135

Query: 134 KEKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQEL 193
           + + +  SYQG+YKQ V+ L+   V+ +  VG+ FDPSLHEAV RE S E+ E I+++EL
Sbjct: 136 EAQALHKSYQGLYKQLVDVLKQLGVAPMRVVGQTFDPSLHEAVLREPSDELAEDIIVEEL 195

Query: 194 RRGFMLGERVLRPARVKVSKGPGRKN 206
           +RG+ L  RVLR A VKVS GPG K+
Sbjct: 196 QRGYHLNGRVLRHALVKVSMGPGPKD 221

[Close]
BLAST of Cla022074 vs. Swiss-Prot
Match: GRPE_PROMS (Protein GrpE OS=Prochlorococcus marinus (strain AS9601) GN=grpE PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34
Identity = 76/178 (42.70%), Postives = 114/178 (64.04%), Query Frame = 1 

Query: 29  QKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQADFDNFRKRSEKERHTV 88
           QKT     E LK      D    ++  +  E  + K +Y+R+ ADFDNFRKR  +++  +
Sbjct: 42  QKTEEINTEELKNSISNNDA---RLEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDL 101

Query: 89  KNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVA 148
           K     + + ++LP++D+FE+ARQ++ P++++ + +  SYQG+YKQ VE L+   VS + 
Sbjct: 102 KIQLVSKTLTAILPIVDNFERARQQLKPESEEAQSLHRSYQGLYKQLVEVLKQQGVSPMR 161

Query: 149 TVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLRPARVKVSKGPGRKNS 207
            VG+ FDPSLHEAV RE S + +E  +I+EL+RG+ L  +VLR A VKVS GPG++NS
Sbjct: 162 VVGQQFDPSLHEAVLREPSEKFEEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNS 216

[Close]
BLAST of Cla022074 vs. Swiss-Prot
Match: GRPE_PROM2 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9215) GN=grpE PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-34
Identity = 75/178 (42.13%), Postives = 114/178 (64.04%), Query Frame = 1 

Query: 29  QKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQADFDNFRKRSEKERHTV 88
           + T+S  + RLK + +E + L              K +Y+R+ ADFDNFRKR  +++  +
Sbjct: 53  KNTISNNDARLKQLEKEHETL--------------KNQYVRISADFDNFRKRQSRDQDDL 112

Query: 89  KNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVA 148
           K     + + ++LP++D+FE+ARQ++ P++++ + +  SYQG+YKQ VE L+   VS + 
Sbjct: 113 KIQIVSKTLTAILPIVDNFERARQQLQPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMR 172

Query: 149 TVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLRPARVKVSKGPGRKNS 207
            VG+ FDP+LHEAV RE S E  E  +I+EL+RG+ L  +VLR A VKVS GPG++NS
Sbjct: 173 VVGQQFDPNLHEAVLREPSEESDEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNS 216

[Close]
BLAST of Cla022074 vs. Swiss-Prot
Match: GRPE_PROM9 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9312) GN=grpE PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-34
Identity = 75/178 (42.13%), Postives = 114/178 (64.04%), Query Frame = 1 

Query: 29  QKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQADFDNFRKRSEKERHTV 88
           QKT     E LK      D    ++  +  E  + K +Y+R+ ADFDNFRKR  +++  +
Sbjct: 42  QKTEEINTEELKNTISNNDA---RLEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDL 101

Query: 89  KNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVA 148
           K     + + ++LP++D+FE+ARQ++ P++++ + +  SYQG+YKQ VE L+   VS + 
Sbjct: 102 KVQLVSKTLTAILPIVDNFERARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMR 161

Query: 149 TVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLRPARVKVSKGPGRKNS 207
            VG+ FDP+LHEAV RE S E KE ++++EL+RG+ L  +VLR A VKVS G G++NS
Sbjct: 162 VVGQQFDPNLHEAVLREPSEEFKEDLIVEELQRGYHLEGKVLRHALVKVSMGHGQQNS 216

[Close]
BLAST of Cla022074 vs. TrEMBL
Match: A0A0A0LQA8_CUCSA (GrpE protein homolog OS=Cucumis sativus GN=Csa_2G315400 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.1e-104
Identity = 193/218 (88.53%), Postives = 208/218 (95.41%), Query Frame = 1 

Query: 1   MEKDGYQFDGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEI 60
           MEKDGY+FDGS LQTLIEVYREAFLDGDQKTVSEVE R+KIIGREKD LS+K+ NIS E+
Sbjct: 93  MEKDGYKFDGSGLQTLIEVYREAFLDGDQKTVSEVEARIKIIGREKDELSRKLMNISTEM 152

Query: 61  TSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDK 120
           TSGKEKYIRLQADFDNFRKRSEKE+HTVKNNAQKEV+ESLLPMID F+KARQ+IVPQTDK
Sbjct: 153 TSGKEKYIRLQADFDNFRKRSEKEQHTVKNNAQKEVLESLLPMIDHFDKARQQIVPQTDK 212

Query: 121 EKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELR 180
           EKKID+SYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREES EIKEGI+IQELR
Sbjct: 213 EKKIDISYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIIIQELR 272

Query: 181 RGFMLGERVLRPARVKVSKGPGRKNSPTIDAGQQPAAA 219
           RGF+LGER+LRPARVKVSKGPGRK+S T+D  QQPAAA
Sbjct: 273 RGFLLGERLLRPARVKVSKGPGRKSSRTVDGEQQPAAA 310

[Close]
BLAST of Cla022074 vs. TrEMBL
Match: B9RJC6_RICCO (GrpE protein homolog OS=Ricinus communis GN=RCOM_1033170 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.6e-74
Identity = 143/207 (69.08%), Postives = 173/207 (83.57%), Query Frame = 1 

Query: 12  SLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQ 71
           SL  LI +Y+EA L GD++TV+++E R+KII      L QKVS++S EITSGKEKYIRLQ
Sbjct: 105 SLTKLINIYKEAILLGDERTVTDIEARIKIIENTNYELVQKVSDLSTEITSGKEKYIRLQ 164

Query: 72  ADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGI 131
           ADFDNFRKRSEKERHT++++AQ EVIESLLPM+DSFE+A+Q+I P+T+ EKKID SYQGI
Sbjct: 165 ADFDNFRKRSEKERHTIRSDAQGEVIESLLPMVDSFERAKQQIKPETEMEKKIDTSYQGI 224

Query: 132 YKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLR 191
           YKQFVE +RS +V+ VATVG+PFDPSLHEA+AREES E KEGI+IQE RRGF+LG R+LR
Sbjct: 225 YKQFVEIMRSLQVAVVATVGKPFDPSLHEAIAREESQEYKEGIIIQEFRRGFLLGGRLLR 284

Query: 192 PARVKVSKGPGRKNSPTIDAGQQPAAA 219
           PA VKVS GPGRK +P     +QPA A
Sbjct: 285 PAMVKVSAGPGRKKAPV--GAEQPATA 309

[Close]
BLAST of Cla022074 vs. TrEMBL
Match: A0A0D2S7D1_GOSRA (GrpE protein homolog OS=Gossypium raimondii GN=B456_009G241800 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.2e-72
Identity = 136/201 (67.66%), Postives = 168/201 (83.58%), Query Frame = 1 

Query: 9   DGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYI 68
           D  SL+ +I VYREA L+GD + VSE+E R+ I+  EKDGL ++V  +SAEITSGKEKYI
Sbjct: 90  DFPSLKAMIRVYREALLNGDDRIVSEIESRISILENEKDGLEKQVLELSAEITSGKEKYI 149

Query: 69  RLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSY 128
           RLQADFDN+RKRSEKER T +++A+ EV+ESLLPM+DSFE+A+Q+I P+T+KEKKID SY
Sbjct: 150 RLQADFDNYRKRSEKERLTARSDAKGEVMESLLPMVDSFERAKQQIKPETEKEKKIDTSY 209

Query: 129 QGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGER 188
           QGIYKQFVE +RS +V+ V TVG+PFDPSLHEA+AREES E KEGI+IQE RRGF+LG+R
Sbjct: 210 QGIYKQFVEIMRSLQVAVVPTVGKPFDPSLHEAIAREESQEFKEGIIIQEFRRGFLLGDR 269

Query: 189 VLRPARVKVSKGPGRKNSPTI 210
           +LRPA VKVS GPG     T+
Sbjct: 270 LLRPAMVKVSSGPGSSKKATV 290

[Close]
BLAST of Cla022074 vs. TrEMBL
Match: W9R7B8_9ROSA (GrpE protein homolog OS=Morus notabilis GN=L484_014934 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.7e-71
Identity = 135/216 (62.50%), Postives = 174/216 (80.56%), Query Frame = 1 

Query: 4   DGYQFDGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSG 63
           D  +  G SL+ L  +Y+EA LDGD++TV ++E R+ +IG ++D L +KVS ++ EI SG
Sbjct: 111 DTLESSGLSLKNLFNLYKEAILDGDEQTVFDIEARIDVIGNDQDKLVEKVSTLTEEIKSG 170

Query: 64  KEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKK 123
           KEKY+RLQADFDNFRKRSEKER +V+++AQ EVIESLLPM+D+FE+A+Q+I P+T+KEK+
Sbjct: 171 KEKYVRLQADFDNFRKRSEKERLSVRSDAQGEVIESLLPMVDNFERAKQQIKPETEKEKQ 230

Query: 124 IDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGF 183
           ID SYQGIYKQFVE LRS RV+ V TVG+PFDPSLHEA+AREES E +EGI+I+E RRGF
Sbjct: 231 IDASYQGIYKQFVEILRSLRVAVVPTVGKPFDPSLHEAIAREESQEFEEGIIIEEFRRGF 290

Query: 184 MLGERVLRPARVKVSKGPGRKNSPTIDAGQQPAAAV 220
           +LG+R++RP+ VKVS GPGR  S    A     AAV
Sbjct: 291 ILGDRLIRPSMVKVSSGPGRNASSVAPASSGTTAAV 326

[Close]
BLAST of Cla022074 vs. TrEMBL
Match: A0A0B0NCP0_GOSAR (GrpE protein homolog OS=Gossypium arboreum GN=F383_03151 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 6.0e-71
Identity = 134/201 (66.67%), Postives = 168/201 (83.58%), Query Frame = 1 

Query: 9   DGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYI 68
           D   L+ +I VYREA L+GD + VSE+E R+ I+  EK+GL ++V  +SAEITSGKEKYI
Sbjct: 91  DFPGLKAMIGVYREALLNGDDRIVSEIESRISILENEKNGLEKQVLELSAEITSGKEKYI 150

Query: 69  RLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSY 128
           RLQADFDN+RKRSEKER T +++A+ EV+ESLLPM+DSFE+A+Q+I P+T+KEKKID+SY
Sbjct: 151 RLQADFDNYRKRSEKERLTARSDAKGEVMESLLPMVDSFERAKQQIKPETEKEKKIDMSY 210

Query: 129 QGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGER 188
           QGIYKQFVE +RS +V+ V TVG+PFDPSLHEA+AREES E KEGI+IQE RRGF+LG+R
Sbjct: 211 QGIYKQFVEIMRSLQVAVVPTVGKPFDPSLHEAIAREESQEFKEGIIIQEFRRGFLLGDR 270

Query: 189 VLRPARVKVSKGPGRKNSPTI 210
           +LRPA VKVS GPG     T+
Sbjct: 271 LLRPAMVKVSSGPGSSKKATV 291

[Close]
BLAST of Cla022074 vs. NCBI nr
Match: gi|659089167|ref|XP_008445362.1| (PREDICTED: grpE protein homolog, mitochondrial [Cucumis melo])

HSP 1 Score: 386.0 bits (990), Expect = 4.5e-104
Identity = 196/218 (89.91%), Postives = 208/218 (95.41%), Query Frame = 1 

Query: 1   MEKDGYQFDGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEI 60
           +EKDGY+FDGSSLQTLIEVYREAFLDGDQKTVSEVE R+KIIGREKD LS+K+SNI  E+
Sbjct: 93  VEKDGYKFDGSSLQTLIEVYREAFLDGDQKTVSEVEARIKIIGREKDELSRKLSNILTEM 152

Query: 61  TSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDK 120
           TSGKEKYIRLQADFDNFRKRSEKE+H VKNNAQKEVIESLLPMID FEKARQ+IVPQTDK
Sbjct: 153 TSGKEKYIRLQADFDNFRKRSEKEQHNVKNNAQKEVIESLLPMIDHFEKARQQIVPQTDK 212

Query: 121 EKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELR 180
           EKKID+SYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREES EIKEGIVIQELR
Sbjct: 213 EKKIDISYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIVIQELR 272

Query: 181 RGFMLGERVLRPARVKVSKGPGRKNSPTIDAGQQPAAA 219
           RGF+LGER+LRPARVKVSKGPGRK+S TID  QQPAAA
Sbjct: 273 RGFLLGERLLRPARVKVSKGPGRKSSRTIDGKQQPAAA 310

[Close]
BLAST of Cla022074 vs. NCBI nr
Match: gi|449466450|ref|XP_004150939.1| (PREDICTED: grpE protein homolog, mitochondrial [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 5.9e-104
Identity = 193/218 (88.53%), Postives = 208/218 (95.41%), Query Frame = 1 

Query: 1   MEKDGYQFDGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEI 60
           MEKDGY+FDGS LQTLIEVYREAFLDGDQKTVSEVE R+KIIGREKD LS+K+ NIS E+
Sbjct: 93  MEKDGYKFDGSGLQTLIEVYREAFLDGDQKTVSEVEARIKIIGREKDELSRKLMNISTEM 152

Query: 61  TSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDK 120
           TSGKEKYIRLQADFDNFRKRSEKE+HTVKNNAQKEV+ESLLPMID F+KARQ+IVPQTDK
Sbjct: 153 TSGKEKYIRLQADFDNFRKRSEKEQHTVKNNAQKEVLESLLPMIDHFDKARQQIVPQTDK 212

Query: 121 EKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELR 180
           EKKID+SYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREES EIKEGI+IQELR
Sbjct: 213 EKKIDISYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIIIQELR 272

Query: 181 RGFMLGERVLRPARVKVSKGPGRKNSPTIDAGQQPAAA 219
           RGF+LGER+LRPARVKVSKGPGRK+S T+D  QQPAAA
Sbjct: 273 RGFLLGERLLRPARVKVSKGPGRKSSRTVDGEQQPAAA 310

[Close]
BLAST of Cla022074 vs. NCBI nr
Match: gi|255545570|ref|XP_002513845.1| (PREDICTED: protein GrpE [Ricinus communis])

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 143/207 (69.08%), Postives = 173/207 (83.57%), Query Frame = 1 

Query: 12  SLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQ 71
           SL  LI +Y+EA L GD++TV+++E R+KII      L QKVS++S EITSGKEKYIRLQ
Sbjct: 105 SLTKLINIYKEAILLGDERTVTDIEARIKIIENTNYELVQKVSDLSTEITSGKEKYIRLQ 164

Query: 72  ADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGI 131
           ADFDNFRKRSEKERHT++++AQ EVIESLLPM+DSFE+A+Q+I P+T+ EKKID SYQGI
Sbjct: 165 ADFDNFRKRSEKERHTIRSDAQGEVIESLLPMVDSFERAKQQIKPETEMEKKIDTSYQGI 224

Query: 132 YKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLR 191
           YKQFVE +RS +V+ VATVG+PFDPSLHEA+AREES E KEGI+IQE RRGF+LG R+LR
Sbjct: 225 YKQFVEIMRSLQVAVVATVGKPFDPSLHEAIAREESQEYKEGIIIQEFRRGFLLGGRLLR 284

Query: 192 PARVKVSKGPGRKNSPTIDAGQQPAAA 219
           PA VKVS GPGRK +P     +QPA A
Sbjct: 285 PAMVKVSAGPGRKKAPV--GAEQPATA 309

[Close]
BLAST of Cla022074 vs. NCBI nr
Match: gi|225459431|ref|XP_002285824.1| (PREDICTED: grpE protein homolog, mitochondrial [Vitis vinifera])

HSP 1 Score: 283.5 bits (724), Expect = 3.2e-73
Identity = 144/210 (68.57%), Postives = 176/210 (83.81%), Query Frame = 1 

Query: 11  SSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRL 70
           S L++LI+ Y++A LDGD+K VSE+E  +  I  EK  L+QKVS +SAEITSGKEKYIRL
Sbjct: 83  SVLKSLIKAYKDAVLDGDEKAVSEIEAMIDTIESEKAELAQKVSALSAEITSGKEKYIRL 142

Query: 71  QADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQG 130
           QADFDNFRKRSEKER TV+ +AQ EV+ESLLPMID+FE+A+Q+I P+T+KEKKID SYQG
Sbjct: 143 QADFDNFRKRSEKERLTVRTDAQGEVVESLLPMIDNFERAKQQIKPETEKEKKIDTSYQG 202

Query: 131 IYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVL 190
           IYKQFVE +RS  V+AVATVG+PFDP+LHEA+AREES E KEGI+IQE+RRGF+LG+R+L
Sbjct: 203 IYKQFVEIMRSCHVAAVATVGKPFDPALHEAIAREESQEFKEGIIIQEIRRGFLLGDRLL 262

Query: 191 RPARVKVSKGPGRKNSPTI--DAGQQPAAA 219
           RPA VKVS GPGRK +  +   +  QPA A
Sbjct: 263 RPAMVKVSTGPGRKKTSAVADKSTGQPATA 292

[Close]
BLAST of Cla022074 vs. NCBI nr
Match: gi|1009136535|ref|XP_015885577.1| (PREDICTED: protein GrpE [Ziziphus jujuba])

HSP 1 Score: 280.0 bits (715), Expect = 3.5e-72
Identity = 143/208 (68.75%), Postives = 172/208 (82.69%), Query Frame = 1 

Query: 12  SLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQ 71
           SL+TLI+ Y+EA LDGD+KTV +VE R+  I +E   L QK+S ++A+ITSGKEKYIRLQ
Sbjct: 104 SLKTLIKEYKEAILDGDEKTVLDVEARIDRIEKEMHELDQKLSTLTADITSGKEKYIRLQ 163

Query: 72  ADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGI 131
           ADFDNFRKRSEKER TV+ NAQ EVIESLLPM+D+FE+A+Q+I P+T+KE KID SYQGI
Sbjct: 164 ADFDNFRKRSEKERLTVRTNAQGEVIESLLPMVDNFERAKQQIKPETEKEIKIDASYQGI 223

Query: 132 YKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLR 191
           YKQFVE +RS  V+ VATVG+PFDP LHEA+AREES E KEGI+IQE RRGF+LG+R+LR
Sbjct: 224 YKQFVEIMRSLHVAVVATVGKPFDPLLHEAIAREESHEFKEGIIIQEFRRGFLLGDRLLR 283

Query: 192 PARVKVSKGPGRKNSP-TIDAGQQPAAA 219
           PA VKVS GPGRK +P T +    P AA
Sbjct: 284 PATVKVSSGPGRKKAPLTHENSSGPPAA 311

The following BLAST results are available for this feature:
BLAST of Cla022074 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GRPE_THEEB2.6e-3549.07Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1[more]
GRPE_PROM45.8e-3538.83Protein GrpE OS=Prochlorococcus marinus (strain MIT 9211) GN=grpE PE=3 SV=1[more]
GRPE_PROMS1.0e-3442.70Protein GrpE OS=Prochlorococcus marinus (strain AS9601) GN=grpE PE=3 SV=1[more]
GRPE_PROM21.3e-3442.13Protein GrpE OS=Prochlorococcus marinus (strain MIT 9215) GN=grpE PE=3 SV=1[more]
GRPE_PROM92.9e-3442.13Protein GrpE OS=Prochlorococcus marinus (strain MIT 9312) GN=grpE PE=3 SV=1[more]
BLAST of Cla022074 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQA8_CUCSA4.1e-10488.53GrpE protein homolog OS=Cucumis sativus GN=Csa_2G315400 PE=3 SV=1[more]
B9RJC6_RICCO7.6e-7469.08GrpE protein homolog OS=Ricinus communis GN=RCOM_1033170 PE=3 SV=1[more]
A0A0D2S7D1_GOSRA4.2e-7267.66GrpE protein homolog OS=Gossypium raimondii GN=B456_009G241800 PE=3 SV=1[more]
W9R7B8_9ROSA2.7e-7162.50GrpE protein homolog OS=Morus notabilis GN=L484_014934 PE=3 SV=1[more]
A0A0B0NCP0_GOSAR6.0e-7166.67GrpE protein homolog OS=Gossypium arboreum GN=F383_03151 PE=3 SV=1[more]
BLAST of Cla022074 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089167|ref|XP_008445362.1|4.5e-10489.91PREDICTED: grpE protein homolog, mitochondrial [Cucumis melo][more]
gi|449466450|ref|XP_004150939.1|5.9e-10488.53PREDICTED: grpE protein homolog, mitochondrial [Cucumis sativus][more]
gi|255545570|ref|XP_002513845.1|1.1e-7369.08PREDICTED: protein GrpE [Ricinus communis][more]
gi|225459431|ref|XP_002285824.1|3.2e-7368.57PREDICTED: grpE protein homolog, mitochondrial [Vitis vinifera][more]
gi|1009136535|ref|XP_015885577.1|3.5e-7268.75PREDICTED: protein GrpE [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000740GrpE
IPR009012GrpE_head
IPR013805GrpE_coiled_coil
Vocabulary: Molecular Function
TermDefinition
GO:0000774adenyl-nucleotide exchange factor activity
GO:0042803protein homodimerization activity
GO:0051087chaperone binding
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016043 cellular component organization
biological_process GO:0009408 response to heat
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0007275 multicellular organism development
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0048856 anatomical structure development
biological_process GO:0044702 single organism reproductive process
biological_process GO:0048608 reproductive structure development
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009791 post-embryonic development
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0048481 plant ovule development
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0006457 protein folding
cellular_component GO:0005634 nucleus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005575 cellular_component
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009507 chloroplast
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0000774 adenyl-nucleotide exchange factor activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022074Cla022074.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000740GrpE nucleotide exchange factorPRINTSPR00773GRPEPROTEINcoord: 68..84
score: 1.8E-25coord: 151..166
score: 1.8E-25coord: 178..197
score: 1.8E-25coord: 96..111
score: 1.8
IPR000740GrpE nucleotide exchange factorHAMAPMF_01151GrpEcoord: 2..199
score: 17
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 11..202
score: 4.7E
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 44..199
score: 7.1
IPR000740GrpE nucleotide exchange factorPROSITEPS01071GRPEcoord: 154..197
scor
IPR009012GrpE nucleotide exchange factor, headGENE3DG3DSA:2.30.22.10coord: 144..201
score: 1.1
IPR009012GrpE nucleotide exchange factor, headunknownSSF51064Head domain of nucleotide exchange factor GrpEcoord: 146..201
score: 6.8
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3DG3DSA:3.90.20.20coord: 45..140
score: 4.4
NoneNo IPR availablePANTHERPTHR21237:SF4GRPE PROTEIN HOMOLOGcoord: 11..202
score: 4.7E
NoneNo IPR availableunknownSSF58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 48..141
score: 3.01